SLC9B1
gene geneOn this page
Also known as NHA1
Summary
SLC9B1 (solute carrier family 9 member B1, HGNC:24244) is a protein-coding gene on chromosome 4q24, encoding Sodium/hydrogen exchanger 9B1 (Q4ZJI4). Sperm-specific Na(+)/H(+) exchanger involved in intracellular pH regulation of spermatozoa. It is a selective cancer dependency (DepMap: 15.5% of cell lines).
The protein encoded by this gene is a sodium/hydrogen exchanger and transmembrane protein. Highly conserved orthologs of this gene have been found in other mammalian species. The expression of this gene may be limited to testis. Multiple transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 150159 — RefSeq curated summary.
At a glance
- GWAS associations: 9
- Clinical variants (ClinVar): 77 total — 1 pathogenic, 1 likely-pathogenic
- Cancer dependency (DepMap): dependent in 15.5% of screened cell lines
- MANE Select transcript:
NM_139173
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24244 |
| Approved symbol | SLC9B1 |
| Name | solute carrier family 9 member B1 |
| Location | 4q24 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NHA1 |
| Ensembl gene | ENSG00000164037 |
| Ensembl biotype | protein_coding |
| OMIM | 611527 |
| Entrez | 150159 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 6 protein_coding, 4 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000296422, ENST00000394789, ENST00000503584, ENST00000504216, ENST00000509614, ENST00000510243, ENST00000510559, ENST00000511253, ENST00000512651, ENST00000514340, ENST00000514972, ENST00000916167
RefSeq mRNA: 2 — MANE Select: NM_139173
NM_001100874, NM_139173
CCDS: CCDS34041, CCDS47119
Canonical transcript exons
ENST00000296422 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001652192 | 102991643 | 102991712 |
| ENSE00001735298 | 102989800 | 102989941 |
| ENSE00001803968 | 102949257 | 102949427 |
| ENSE00002085617 | 103019599 | 103019705 |
| ENSE00002456940 | 102945193 | 102945320 |
| ENSE00002484120 | 102946647 | 102946789 |
| ENSE00002487384 | 102900928 | 102901332 |
| ENSE00003527699 | 102910439 | 102910588 |
| ENSE00003552563 | 102905514 | 102905650 |
| ENSE00003567788 | 102932124 | 102932299 |
| ENSE00003572492 | 102906536 | 102906644 |
| ENSE00003651197 | 102911431 | 102911537 |
Expression profiles
Bgee: expression breadth ubiquitous, 161 present calls, max score 92.46.
FANTOM5 (CAGE): breadth broad, TPM avg 2.3376 / max 159.6841, expressed in 802 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 53431 | 2.3376 | 802 |
Top tissues by expression
246 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| sperm | CL:0000019 | 92.46 | silver quality |
| left testis | UBERON:0004533 | 91.98 | gold quality |
| right testis | UBERON:0004534 | 91.28 | gold quality |
| testis | UBERON:0000473 | 89.66 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.02 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.46 | gold quality |
| calcaneal tendon | UBERON:0003701 | 72.83 | gold quality |
| islet of Langerhans | UBERON:0000006 | 69.08 | gold quality |
| stromal cell of endometrium | CL:0002255 | 68.44 | gold quality |
| adrenal tissue | UBERON:0018303 | 68.00 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 66.37 | gold quality |
| right adrenal gland | UBERON:0001233 | 65.44 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 65.03 | gold quality |
| ventricular zone | UBERON:0003053 | 65.01 | gold quality |
| lymph node | UBERON:0000029 | 64.95 | gold quality |
| right coronary artery | UBERON:0001625 | 64.88 | gold quality |
| left adrenal gland | UBERON:0001234 | 64.84 | gold quality |
| granulocyte | CL:0000094 | 64.82 | gold quality |
| embryo | UBERON:0000922 | 64.77 | gold quality |
| ganglionic eminence | UBERON:0004023 | 64.77 | gold quality |
| tibial nerve | UBERON:0001323 | 64.57 | gold quality |
| left ovary | UBERON:0002119 | 64.57 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 64.05 | gold quality |
| spinal cord | UBERON:0002240 | 64.00 | gold quality |
| adrenal gland | UBERON:0002369 | 63.82 | gold quality |
| corpus callosum | UBERON:0002336 | 63.79 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 63.74 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 63.62 | gold quality |
| cerebellar cortex | UBERON:0002129 | 63.52 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 63.15 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 6.96 |
| E-ANND-3 | yes | 5.79 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
13 targeting SLC9B1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4760-3P | 99.93 | 70.50 | 2385 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-4743-3P | 99.62 | 68.12 | 2095 |
| HSA-MIR-3182 | 99.40 | 68.15 | 2454 |
| HSA-MIR-6507-3P | 99.35 | 67.32 | 1059 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-3198 | 97.84 | 65.64 | 579 |
| HSA-MIR-4309 | 97.84 | 65.45 | 588 |
| HSA-MIR-215-3P | 97.02 | 68.01 | 1209 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 15.5% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 3)
- cloning and characterization of a novel NHEDC1 (Na+/H+ exchanger like domain containing 1) gene; it was mapped to chromosome 4p24; molecular weight of NHEDC1 is about 56 KDa; it is exclusively expressed in the testis (PMID:16850186)
- Results identified multiple cis-acting DNA regulatory elements in the 5 end of the SLC9B1 gene and shown that DNA methylation at these elements could provide mechanisms by which SLC9B1 expression is restricted to male germ cells. (PMID:25701605)
- DNA methylation patterns in maternal blood at four CpG sites in SLC9B1 are predictive of fetal intolerance of labor during the late second and early third trimester. (PMID:29235940)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | SLC9B2 | ENSDARG00000052700 |
| mus_musculus | Slc9b1 | ENSMUSG00000050150 |
| rattus_norvegicus | Slc9b1 | ENSRNOG00000069829 |
| drosophila_melanogaster | Nha1 | FBGN0031865 |
| drosophila_melanogaster | Nha2 | FBGN0263390 |
| caenorhabditis_elegans | WBGENE00009617 | |
| caenorhabditis_elegans | WBGENE00009618 | |
| caenorhabditis_elegans | WBGENE00010214 |
Paralogs (1): SLC9B2 (ENSG00000164038)
Protein
Protein identifiers
Sodium/hydrogen exchanger 9B1 — Q4ZJI4 (reviewed: Q4ZJI4)
Alternative names: Na(+)/H(+) exchanger-like domain-containing protein 1, Sodium/hydrogen exchanger-like domain-containing protein 1, Solute carrier family 9, subfamily B member 1
All UniProt accessions (6): D6RA80, D6RFK4, D6RGI9, D6RHJ0, H0Y9Z0, Q4ZJI4
UniProt curated annotations — full annotation on UniProt →
Function. Sperm-specific Na(+)/H(+) exchanger involved in intracellular pH regulation of spermatozoa. Involved in sperm motility and fertility.
Subcellular location. Cell projection. Cilium. Flagellum membrane.
Tissue specificity. Expressed only in the testis.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q4ZJI4-1 | 1 | yes |
| Q4ZJI4-2 | 2 | |
| Q4ZJI4-3 | 3 | |
| Q4ZJI4-5 | 4 |
RefSeq proteins (2): NP_001094344, NP_631912* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006153 | Cation/H_exchanger_TM | Domain |
| IPR038770 | Na+/solute_symporter_sf | Homologous_superfamily |
| IPR051843 | CPA1_transporter | Family |
Pfam: PF00999
UniProt features (23 total): transmembrane region 13, splice variant 4, compositionally biased region 2, chain 1, region of interest 1, sequence variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q4ZJI4-F1 | 79.20 | 0.39 |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-2672351 | Stimuli-sensing channels |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 75 (showing top):
GOBP_SINGLE_FERTILIZATION, chr4q24, GOBP_SODIUM_ION_TRANSMEMBRANE_TRANSPORT, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CILIUM_MOVEMENT, WTGAAAT_UNKNOWN, GOBP_CILIUM_OR_FLAGELLUM_DEPENDENT_CELL_MOTILITY, GOMF_PROTON_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, GOBP_REGULATION_OF_PH, GOBP_MONOATOMIC_ION_HOMEOSTASIS, GOBP_FERTILIZATION, GOBP_TRANSMEMBRANE_TRANSPORT
GO Biological Process (11): single fertilization (GO:0007338), flagellated sperm motility (GO:0030317), monoatomic ion transmembrane transport (GO:0034220), regulation of intracellular pH (GO:0051453), obsolete inorganic cation transmembrane transport (GO:0098662), monoatomic ion transport (GO:0006811), monoatomic cation transport (GO:0006812), sodium ion transport (GO:0006814), sodium ion transmembrane transport (GO:0035725), transmembrane transport (GO:0055085), proton transmembrane transport (GO:1902600)
GO Molecular Function (2): sodium:proton antiporter activity (GO:0015385), antiporter activity (GO:0015297)
GO Cellular Component (6): plasma membrane (GO:0005886), sperm principal piece (GO:0097228), cilium (GO:0005929), membrane (GO:0016020), motile cilium (GO:0031514), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Ion channel transport | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| monoatomic ion transport | 2 |
| transport | 2 |
| monoatomic cation transmembrane transport | 2 |
| fertilization | 1 |
| cilium-dependent cell motility | 1 |
| cilium movement involved in cell motility | 1 |
| sperm motility | 1 |
| transmembrane transport | 1 |
| regulation of pH | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| regulation of biological quality | 1 |
| metal ion transport | 1 |
| sodium ion transport | 1 |
| cellular process | 1 |
| sodium ion transmembrane transporter activity | 1 |
| metal cation:proton antiporter activity | 1 |
| secondary active transmembrane transporter activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| sperm flagellum | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
584 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC9B1 | SLC9C1 | Q4G0N8 | 707 |
| SLC9B1 | SLC9C2 | Q5TAH2 | 634 |
| SLC9B1 | SLC9A5 | Q14940 | 616 |
| SLC9B1 | SLC9A9 | Q8IVB4 | 603 |
| SLC9B1 | SLC9A6 | Q92581 | 599 |
| SLC9B1 | SLC9A8 | Q9Y2E8 | 597 |
| SLC9B1 | SLC9A1 | P19634 | 592 |
| SLC9B1 | CPA2 | P48052 | 585 |
| SLC9B1 | BCCIP | Q9P287 | 541 |
| SLC9B1 | GARIN2 | Q8N9W8 | 531 |
| SLC9B1 | SLC9A2 | Q9UBY0 | 522 |
| SLC9B1 | SLC9A4 | Q6AI14 | 496 |
| SLC9B1 | CPA1 | P15085 | 494 |
| SLC9B1 | CATSPER1 | Q8NEC5 | 474 |
| SLC9B1 | WBP2NL | Q6ICG8 | 461 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| AMFR | SLC9B1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC9B1 | CFTR | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (2): SLC9B1 (PCA), AMFR (Affinity Capture-MS)
ESM2 similar proteins: A0A2K2BF92, A0A6P3HVI0, A1L3P4, A2VDL4, A4IHB9, B9H7I1, D3ZJ25, D4A7H1, E7EXX2, F7B113, O00341, O35874, O54902, O57321, P24942, P31596, P31597, P43003, P43004, P43005, P43006, P46411, P48763, P49281, P49282, P50482, P51906, P51907, P51912, P56564, Q0D7E4, Q3ZAS0, Q4R7S2, Q4ZJI4, Q5BKR2, Q5M7K3, Q5R6B8, Q6DFC0, Q86UD5, Q8BLV3
Diamond homologs: A0A6P3HVI0, A4IHB9, A6NJY1, Q4R7S2, Q4ZJI4, Q5BKR2, Q5R6B8, Q86UD5, Q8C0X2
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
77 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 52 |
| Likely benign | 12 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2503084 | NM_139173.4(SLC9B1):c.1338_1339del (p.Leu447fs) | Pathogenic |
| 1703532 | GRCh37/hg19 4q24(chr4:102851823-104641864) | Likely pathogenic |
SpliceAI
2687 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:102887339:A:AG | acceptor_gain | 1.0000 |
| 4:102887340:G:GG | acceptor_gain | 1.0000 |
| 4:102906645:C:CC | acceptor_gain | 1.0000 |
| 4:102932119:TTTA:T | donor_loss | 1.0000 |
| 4:102932120:TTACC:T | donor_loss | 1.0000 |
| 4:102932121:TACCT:T | donor_loss | 1.0000 |
| 4:102932122:A:T | donor_loss | 1.0000 |
| 4:102932123:C:CC | donor_loss | 1.0000 |
| 4:102932185:A:AC | donor_gain | 1.0000 |
| 4:102932186:C:CC | donor_gain | 1.0000 |
| 4:102932219:T:TA | donor_gain | 1.0000 |
| 4:102932295:CAAAA:C | acceptor_gain | 1.0000 |
| 4:102932296:AAAA:A | acceptor_gain | 1.0000 |
| 4:102932297:AAA:A | acceptor_gain | 1.0000 |
| 4:102932298:AA:A | acceptor_gain | 1.0000 |
| 4:102932300:C:CC | acceptor_gain | 1.0000 |
| 4:102934919:C:CT | donor_gain | 1.0000 |
| 4:102934920:T:TT | donor_gain | 1.0000 |
| 4:102934932:C:CT | donor_gain | 1.0000 |
| 4:102934933:T:TT | donor_gain | 1.0000 |
| 4:102934937:T:TA | donor_gain | 1.0000 |
| 4:102991637:TTTTA:T | donor_loss | 1.0000 |
| 4:102991638:TTTA:T | donor_loss | 1.0000 |
| 4:102991639:TTACC:T | donor_loss | 1.0000 |
| 4:102991640:TA:T | donor_loss | 1.0000 |
| 4:102991642:C:CT | donor_loss | 1.0000 |
| 4:102991709:CATG:C | acceptor_gain | 1.0000 |
| 4:102991711:TG:T | acceptor_gain | 1.0000 |
| 4:102991713:C:CC | acceptor_gain | 1.0000 |
| 4:103019602:CAA:C | donor_gain | 1.0000 |
AlphaMissense
3338 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:102906588:A:C | F381L | 0.997 |
| 4:102906588:A:T | F381L | 0.997 |
| 4:102906590:A:G | F381L | 0.997 |
| 4:102905527:T:A | K440I | 0.995 |
| 4:102932155:G:C | F266L | 0.994 |
| 4:102932155:G:T | F266L | 0.994 |
| 4:102932157:A:G | F266L | 0.994 |
| 4:102945209:A:G | W213R | 0.994 |
| 4:102945209:A:T | W213R | 0.994 |
| 4:102905514:C:A | Q444H | 0.993 |
| 4:102905514:C:G | Q444H | 0.993 |
| 4:102905526:T:A | K440N | 0.993 |
| 4:102905526:T:G | K440N | 0.993 |
| 4:102932185:A:C | S256R | 0.993 |
| 4:102932185:A:T | S256R | 0.993 |
| 4:102932187:T:G | S256R | 0.993 |
| 4:102945194:C:G | G218R | 0.993 |
| 4:102945193:C:T | G218D | 0.991 |
| 4:102901223:G:T | A481D | 0.990 |
| 4:102901323:C:G | G448R | 0.990 |
| 4:102906614:A:G | W373R | 0.990 |
| 4:102906614:A:T | W373R | 0.990 |
| 4:102932188:G:C | S255R | 0.990 |
| 4:102932188:G:T | S255R | 0.990 |
| 4:102932190:T:G | S255R | 0.990 |
| 4:102905611:C:G | R412P | 0.989 |
| 4:102906612:C:A | W373C | 0.989 |
| 4:102906612:C:G | W373C | 0.989 |
| 4:102945247:G:T | A200D | 0.988 |
| 4:102901322:C:T | G448D | 0.987 |
dbSNP variants (sampled 300 via entrez): RS1000026364 (4:103007153 G>A), RS1000041969 (4:102903026 T>C), RS1000072864 (4:102903599 G>A), RS1000095625 (4:102994089 C>A,T), RS1000113193 (4:103000831 C>G), RS1000122566 (4:103019760 A>G), RS1000175984 (4:103013134 G>T), RS1000223629 (4:102894704 C>T), RS1000261050 (4:102993956 T>C), RS1000279528 (4:102912397 G>T), RS10003326 (4:102948193 C>G,T), RS1000355223 (4:102887951 A>C), RS1000392197 (4:103000790 C>A,T), RS1000403139 (4:102986771 A>G), RS1000409806 (4:102938789 A>G)
Disease associations
OMIM: gene MIM:611527 | disease phenotypes: MIM:604928, MIM:616576, MIM:276900
GenCC curated gene-disease
Mondo (3): Wolfram syndrome 2 (MONDO:0011502), immunodeficiency, common variable, 12 (MONDO:0014697), Usher syndrome (MONDO:0019501)
Orphanet (4): Wolfram syndrome (Orphanet:3463), OBSOLETE: Common variable immunodeficiency (Orphanet:1572), NFKB1-related immune dysregulation (Orphanet:696874), Usher syndrome (Orphanet:886)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004946_70 | Schizophrenia | 3.000000e-08 |
| GCST006061_22 | Atrial fibrillation | 2.000000e-12 |
| GCST006061_23 | Atrial fibrillation | 4.000000e-11 |
| GCST006414_85 | Atrial fibrillation | 4.000000e-08 |
| GCST007201_466 | Schizophrenia | 4.000000e-08 |
| GCST008919_4 | Asthma and attention deficit hyperactivity disorder | 3.000000e-08 |
| GCST009379_265 | Type 2 diabetes | 2.000000e-10 |
| GCST009597_14 | Multiple sclerosis | 7.000000e-16 |
| GCST90013406_237 | Liver enzyme levels (alkaline phosphatase) | 2.000000e-15 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D052245 | Usher Syndromes | C09.218.458.341.186.500.500; C09.218.458.341.887.886; C10.597.751.418.341.186.500.500; C10.597.751.418.341.887.886; C10.597.751.941.162.625.500; C11.768.585.658.500.813; C11.966.075.375.500; C16.131.077.299.500; C16.320.290.684.500; C23.888.592.763.393.341.887.886 |
| C565733 | Wolfram Syndrome 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC9 family of sodium/hydrogen exchangers
CTD chemical–gene interactions
14 total (human), top 14 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, decreases methylation | 2 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| bisphenol S | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Methapyrilene | increases methylation | 1 |
| Oxygen | increases expression | 1 |
| Polystyrenes | decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| 2,4-Dichlorophenoxyacetic Acid | decreases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Permethrin | increases expression | 1 |
Clinical trials (associated diseases)
18 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT02065011 | PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Determine the Long-Term Safety, Tolerability and Biological Activity of SAR421869 in Patients With Usher Syndrome Type 1B |
| NCT01505062 | PHASE1/PHASE2 | TERMINATED | Study of SAR421869 in Participants With Retinitis Pigmentosa Associated With Usher Syndrome Type 1B |
| NCT04355689 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Safety and Efficacy of NPI-001 Tablets for RP Associated With Usher Syndrome |
| NCT06789445 | PHASE1/PHASE2 | RECRUITING | A Study to Investigate the Safety of OpCT-001 in Adults Who Have Primary Photoreceptor Disease (CLARICO) |
| NCT00004345 | Not specified | TERMINATED | Study of Dietary N-3 Fatty Acids in Patients With Retinitis Pigmentosa and Usher Syndrome |
| NCT00016471 | Not specified | COMPLETED | A Genetic Analysis of Usher Syndrome in Ashkenazi Jews |
| NCT00106743 | Not specified | COMPLETED | Natural History and Genetic Studies of Usher Syndrome |
| NCT01954953 | Not specified | UNKNOWN | Clinical and Genetic Examination of Usher Syndrome Patients’ Cohort in Europe |
| NCT02435940 | Not specified | RECRUITING | Inherited Retinal Degenerative Disease Registry |
| NCT03319524 | Not specified | COMPLETED | Clinical and Genetic Testing of Patients With Usher Syndrome |
| NCT03901391 | Not specified | COMPLETED | Prospective Open Clinical and Genetic Study of Patients With Retinitis Pigmentosa |
| NCT03990727 | Not specified | UNKNOWN | Phenotype Correlates Genotype of Inherited Retina Dystrophies, Retinitis Pigmentosa, Con>Rod Dystrophies. |
| NCT04665726 | Not specified | RECRUITING | Natural History Study of Usher Syndrome ( Light4Deaf ) |
| NCT04906135 | Not specified | COMPLETED | Auditory Neural Function in Implanted Patients With Usher Syndrome |
| NCT05355415 | Not specified | RECRUITING | Adaptive Optics Imaging of Outer Retinal Diseases |
| NCT07278843 | Not specified | RECRUITING | Natural History of Photoreceptor Degeneration in USH1B: Clinical Parameters and Validation of Functional Vision Tests in MYO7A |
| NCT07548944 | Not specified | RECRUITING | Observational Study to Investigate the Short-term Effects of Transcorneal Electrical Stimulation on Visual Performance |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): immunodeficiency, common variable, 12, Usher syndrome, Wolfram syndrome 2