SLC9D1
geneOn this page
Also known as FLJ20623
Summary
SLC9D1 (solute carrier family 9 member D1, HGNC:20329) is a protein-coding gene on chromosome 13q34, encoding Solute carrier family 9 member D1 (Q6UWJ1). Probable Na(+):H(+) or K(+):H(+) antiporter.
This gene encodes a member of the monovalent cation:proton antiporter 2 (CPA2) family of transporter proteins. Members of this family typically couple the export of monovalent cations, such as potassium or sodium, to the import of protons across cellular membranes. Mutations in this gene have been identified in patients with a rare inherited vision defect, cornea guttata with anterior polar cataract.
Source: NCBI Gene 55002 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Fuchs’ endothelial dystrophy (Limited, GenCC)
- GWAS associations: 8
- Clinical variants (ClinVar): 135 total
- MANE Select transcript:
NM_017905
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20329 |
| Approved symbol | SLC9D1 |
| Name | solute carrier family 9 member D1 |
| Location | 13q34 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20623 |
| Ensembl gene | ENSG00000150403 |
| Ensembl biotype | protein_coding |
| OMIM | 617134 |
| Entrez | 55002 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 29 protein_coding, 3 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000375391, ENST00000434316, ENST00000460039, ENST00000462877, ENST00000465556, ENST00000473287, ENST00000474393, ENST00000491166, ENST00000619336, ENST00000620021, ENST00000622371, ENST00000909161, ENST00000909162, ENST00000909163, ENST00000909164, ENST00000909165, ENST00000909166, ENST00000909167, ENST00000909168, ENST00000909169, ENST00000909170, ENST00000909171, ENST00000909172, ENST00000909173, ENST00000909174, ENST00000909175, ENST00000928642, ENST00000928643, ENST00000955126, ENST00000955127, ENST00000955128, ENST00000955129, ENST00000955130
RefSeq mRNA: 7 — MANE Select: NM_017905
NM_001349741, NM_001349742, NM_001349743, NM_001349744, NM_001349745, NM_001349746, NM_017905
CCDS: CCDS86365, CCDS9537
Canonical transcript exons
ENST00000434316 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001191953 | 113539357 | 113539507 |
| ENSE00001191995 | 113549425 | 113550229 |
| ENSE00001311677 | 113534045 | 113534240 |
| ENSE00001878727 | 113491021 | 113491273 |
| ENSE00003581786 | 113548303 | 113548452 |
| ENSE00003595632 | 113503496 | 113503588 |
| ENSE00003633471 | 113547300 | 113547379 |
| ENSE00003634706 | 113499958 | 113500149 |
| ENSE00003724563 | 113498342 | 113498521 |
| ENSE00003729450 | 113510238 | 113510424 |
| ENSE00003729632 | 113520616 | 113520733 |
| ENSE00003732306 | 113495502 | 113496025 |
| ENSE00003751860 | 113501752 | 113501880 |
Expression profiles
Bgee: expression breadth ubiquitous, 269 present calls, max score 97.92.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 25.4476 / max 273.7724, expressed in 1805 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 136226 | 22.2228 | 1798 |
| 136225 | 1.4700 | 850 |
| 136227 | 1.2596 | 781 |
| 136234 | 0.2718 | 76 |
| 136228 | 0.0835 | 24 |
| 136233 | 0.0623 | 10 |
| 136232 | 0.0331 | 10 |
| 207120 | 0.0260 | 4 |
| 136231 | 0.0184 | 7 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 97.92 | gold quality |
| tibia | UBERON:0000979 | 95.75 | gold quality |
| decidua | UBERON:0002450 | 95.52 | gold quality |
| thoracic aorta | UBERON:0001515 | 95.47 | gold quality |
| ascending aorta | UBERON:0001496 | 95.45 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 95.39 | gold quality |
| aorta | UBERON:0000947 | 95.32 | gold quality |
| popliteal artery | UBERON:0002250 | 95.26 | gold quality |
| tibial artery | UBERON:0007610 | 95.25 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.03 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 94.98 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.95 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.94 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.90 | gold quality |
| right coronary artery | UBERON:0001625 | 94.81 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.75 | gold quality |
| cartilage tissue | UBERON:0002418 | 94.43 | gold quality |
| bronchial epithelial cell | CL:0002328 | 94.31 | gold quality |
| body of pancreas | UBERON:0001150 | 94.24 | gold quality |
| secondary oocyte | CL:0000655 | 94.15 | gold quality |
| cerebellar vermis | UBERON:0004720 | 93.90 | gold quality |
| cerebellum | UBERON:0002037 | 93.74 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.72 | gold quality |
| synovial joint | UBERON:0002217 | 93.69 | gold quality |
| left coronary artery | UBERON:0001626 | 93.64 | gold quality |
| body of uterus | UBERON:0009853 | 93.54 | gold quality |
| left uterine tube | UBERON:0001303 | 93.35 | gold quality |
| pancreas | UBERON:0001264 | 93.21 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 93.18 | gold quality |
| minor salivary gland | UBERON:0001830 | 93.16 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.78 |
| E-MTAB-7303 | no | 749.71 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
45 targeting SLC9D1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-4502 | 99.65 | 66.99 | 1021 |
| HSA-MIR-4761-5P | 99.51 | 66.69 | 804 |
| HSA-MIR-578 | 99.46 | 68.36 | 1787 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-6507-5P | 99.36 | 70.46 | 2524 |
Literature-anchored findings (GeneRIF, showing 3)
- This study reveals, for the first time, that mutations in TMCO3 are associated with cornea guttata and anterior polar cataract, warranting further investigation into the pathogenesis of this disorder. (PMID:27484837)
- TMCO3, a Putative K[+] :Proton Antiporter at the Golgi Apparatus, Is Important for Longitudinal Growth in Mice and Humans. (PMID:37554015)
- M2 macrophage-derived exosomal circTMCO3 acts through miR-515-5p and ITGA8 to enhance malignancy in ovarian cancer. (PMID:38755265)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tmco3 | ENSDARG00000075108 |
| mus_musculus | Tmco3 | ENSMUSG00000038497 |
| rattus_norvegicus | Tmco3 | ENSRNOG00000046973 |
Protein
Protein identifiers
Solute carrier family 9 member D1 — Q6UWJ1 (reviewed: Q6UWJ1)
Alternative names: Putative LAG1-interacting protein, Transmembrane and coiled-coil domain-containing protein 3
All UniProt accessions (7): Q6UWJ1, A0A024RE09, A0A087WUP6, A0A087WVR2, A0A087WXI4, A0A087WZ28, A0A087X2E0
UniProt curated annotations — full annotation on UniProt →
Function. Probable Na(+):H(+) or K(+):H(+) antiporter. Upon IGF1-dependent phosphorylation, facilitates the membrane translocation and activation of AKT1.
Subunit / interactions. Interacts (when phosphorylated at Ser-85) with AKT1; the interaction facilitates the membrane translocation and activation of AKT1.
Subcellular location. Golgi apparatus membrane. Cell membrane.
Tissue specificity. Expressed in the cornea, lens capsule and choroid-retinal pigment epithelium (at protein level).
Post-translational modifications. Phosphorylation at Ser-85 induced by IGF1 facilitates the membrane translocation and activation of AKT1.
Disease relevance. Defects in this gene seem to be linked to short stature and cornea guttata and anterior polar cataract.
Similarity. Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6UWJ1-1 | 1 | yes |
| Q6UWJ1-2 | 2 | |
| Q6UWJ1-3 | 3 |
RefSeq proteins (7): NP_001336670, NP_001336671, NP_001336672, NP_001336673, NP_001336674, NP_001336675, NP_060375* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006153 | Cation/H_exchanger_TM | Domain |
| IPR038770 | Na+/solute_symporter_sf | Homologous_superfamily |
| IPR045158 | KEA4/5/6-like | Family |
Pfam: PF00999
UniProt features (29 total): transmembrane region 10, splice variant 4, sequence variant 4, sequence conflict 4, glycosylation site 2, signal peptide 1, chain 1, region of interest 1, coiled-coil region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6UWJ1-F1 | 75.64 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 85
Glycosylation sites (2): 206, 230
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 144 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_UP, GOBP_POTASSIUM_ION_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GTGCCTT_MIR506, FOSTER_TOLERANT_MACROPHAGE_UP, chr13q34, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, GOMF_PROTON_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, GOBP_TRANSMEMBRANE_TRANSPORT, PODAR_RESPONSE_TO_ADAPHOSTIN_UP, NUYTTEN_EZH2_TARGETS_DN, TCCCRNNRTGC_UNKNOWN, MASSARWEH_TAMOXIFEN_RESISTANCE_UP, GOMF_METAL_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, NUYTTEN_NIPP1_TARGETS_DN
GO Biological Process (5): monoatomic ion transport (GO:0006811), monoatomic cation transport (GO:0006812), transmembrane transport (GO:0055085), potassium ion transmembrane transport (GO:0071805), proton transmembrane transport (GO:1902600)
GO Molecular Function (2): potassium:proton antiporter activity (GO:0015386), antiporter activity (GO:0015297)
GO Cellular Component (1): membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 2 |
| monoatomic cation transmembrane transport | 2 |
| monoatomic ion transport | 1 |
| cellular process | 1 |
| potassium ion transport | 1 |
| solute:potassium antiporter activity | 1 |
| metal cation:proton antiporter activity | 1 |
| secondary active transmembrane transporter activity | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1364 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC9D1 | GRTP1 | Q5TC63 | 616 |
| SLC9D1 | ADPRHL1 | Q8NDY3 | 532 |
| SLC9D1 | DCUN1D2 | Q6PH85 | 479 |
| SLC9D1 | PCID2 | Q5JVF3 | 472 |
| SLC9D1 | TYSND1 | Q2T9J0 | 437 |
| SLC9D1 | MRI1 | Q9BV20 | 430 |
| SLC9D1 | ZNF705A | Q6ZN79 | 417 |
| SLC9D1 | CACNG1 | Q06432 | 385 |
| SLC9D1 | TMCO6 | Q96DC7 | 380 |
| SLC9D1 | SPINDOC | Q9BUA3 | 370 |
| SLC9D1 | C20orf96 | Q9NUD7 | 368 |
| SLC9D1 | WDR89 | Q96FK6 | 365 |
| SLC9D1 | TREH | O43280 | 353 |
| SLC9D1 | C9K0I3 | C9K0I3 | 353 |
| SLC9D1 | YIPF6 | Q96EC8 | 352 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| EGFR | TMCO3 | psi-mi:“MI:0915”(physical association) | 0.550 |
| TMCO3 | EGFR | psi-mi:“MI:0915”(physical association) | 0.550 |
| CLCC1 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.530 |
| CTLA4 | B4GALT5 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC7A1 | STXBP3 | psi-mi:“MI:0914”(association) | 0.530 |
| TMCO3 | TSHR | psi-mi:“MI:0915”(physical association) | 0.370 |
| TMCO3 | HSPB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ESYT2 | psi-mi:“MI:0914”(association) | 0.350 | |
| E5 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMCO3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| FNDC5 | CAPN15 | psi-mi:“MI:0914”(association) | 0.350 |
| FFAR1 | SLC12A8 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPAN8 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| TPST2 | NDC80 | psi-mi:“MI:0914”(association) | 0.350 |
| FPR2 | SCAMP3 | psi-mi:“MI:0914”(association) | 0.350 |
| TMCO3 | CTSV | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL22 | TRAV18 | psi-mi:“MI:0914”(association) | 0.350 |
| CLGN | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| CXCR3 | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
| CXCR4 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| GPR17 | C1QTNF9B | psi-mi:“MI:0914”(association) | 0.350 |
| HTR1E | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| MIS18A | CCDC85C | psi-mi:“MI:0914”(association) | 0.350 |
| SAAL1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| SCN3B | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| SLC2A12 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| SLC15A3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC16A8 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (93): TMCO3 (Two-hybrid), TMCO3 (PCA), TAP2 (Affinity Capture-MS), TMCO3 (Affinity Capture-MS), COG4 (Affinity Capture-MS), IFT57 (Affinity Capture-MS), HEMK1 (Affinity Capture-MS), SLC25A17 (Affinity Capture-MS), TYK2 (Affinity Capture-MS), PSME2 (Affinity Capture-MS), ATG9A (Affinity Capture-MS), PXMP2 (Affinity Capture-MS), PIGQ (Affinity Capture-MS), SQLE (Affinity Capture-MS), GUF1 (Affinity Capture-MS)
ESM2 similar proteins: A2AWR3, A6QL92, A6QPI1, B9FMX4, D3ZWZ9, F4IKF6, O35458, O35633, P58355, Q12791, Q28CE7, Q4LE88, Q4V3B8, Q569T7, Q5M8T2, Q5R4D7, Q5R6J3, Q5R831, Q5R9A7, Q5RD30, Q5ZLF4, Q62976, Q6DCG9, Q6DG36, Q6DIV6, Q6P499, Q6PF45, Q6UWJ1, Q7Z3F1, Q8BGF8, Q8BGN5, Q8BH01, Q8BUV8, Q8CA03, Q8R314, Q8R4H9, Q8RWF4, Q8RWH8, Q8TAD4, Q8WV83
Diamond homologs: A1AGN6, A4TGX5, A4WFE4, A6TEY9, A7ME23, A7ZSM6, A8A5F8, A8AQP0, A9MN27, A9MT17, A9R473, B1IPB4, B1JIU4, B1LHF1, B1X6K0, B2U3F5, B2VK47, B4SUV7, B4TKN2, B4TXF9, B5BH03, B5F8G9, B5FJN1, B5R2A8, B5X0N6, B5XN76, B6I2Q9, B7L4M7, B7LS57, B7M1Q2, B7MCW6, B7N1D2, B7NDV9, B7UK61, C0Q0D3, C4ZUK6, C6DG97, O65272, P39830, P44933
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
135 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 96 |
| Likely benign | 10 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3629 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:113495500:A:AG | acceptor_gain | 1.0000 |
| 13:113495501:G:GC | acceptor_gain | 1.0000 |
| 13:113495501:GCT:G | acceptor_gain | 1.0000 |
| 13:113495501:GCTGA:G | acceptor_gain | 1.0000 |
| 13:113496022:AAAGG:A | donor_loss | 1.0000 |
| 13:113496023:AAGG:A | donor_loss | 1.0000 |
| 13:113496024:AGGT:A | donor_loss | 1.0000 |
| 13:113496026:G:A | donor_loss | 1.0000 |
| 13:113496027:T:A | donor_loss | 1.0000 |
| 13:113498330:A:AG | acceptor_gain | 1.0000 |
| 13:113498331:C:G | acceptor_gain | 1.0000 |
| 13:113498332:A:AG | acceptor_gain | 1.0000 |
| 13:113498332:AAAT:A | acceptor_gain | 1.0000 |
| 13:113498333:A:G | acceptor_gain | 1.0000 |
| 13:113498335:T:G | acceptor_gain | 1.0000 |
| 13:113498339:TA:T | acceptor_loss | 1.0000 |
| 13:113498341:GGAA:G | acceptor_gain | 1.0000 |
| 13:113498483:G:GT | donor_gain | 1.0000 |
| 13:113498495:G:GT | donor_gain | 1.0000 |
| 13:113498518:ATCA:A | donor_gain | 1.0000 |
| 13:113498519:TCA:T | donor_gain | 1.0000 |
| 13:113498522:G:GG | donor_gain | 1.0000 |
| 13:113500146:AAAG:A | donor_loss | 1.0000 |
| 13:113500147:AAG:A | donor_loss | 1.0000 |
| 13:113500148:AGGTA:A | donor_gain | 1.0000 |
| 13:113500149:GG:G | donor_loss | 1.0000 |
| 13:113500149:GGTAG:G | donor_gain | 1.0000 |
| 13:113500150:GTA:G | donor_gain | 1.0000 |
| 13:113503494:A:AG | acceptor_gain | 1.0000 |
| 13:113503495:G:GA | acceptor_gain | 1.0000 |
AlphaMissense
4407 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 13:113548393:A:C | S621R | 0.999 |
| 13:113548395:C:A | S621R | 0.999 |
| 13:113548395:C:G | S621R | 0.999 |
| 13:113549443:A:C | S647R | 0.999 |
| 13:113549445:T:A | S647R | 0.999 |
| 13:113549445:T:G | S647R | 0.999 |
| 13:113549458:A:C | S652R | 0.999 |
| 13:113549460:C:A | S652R | 0.999 |
| 13:113549460:C:G | S652R | 0.999 |
| 13:113495889:T:C | L103P | 0.998 |
| 13:113510370:A:C | S391R | 0.998 |
| 13:113510372:C:A | S391R | 0.998 |
| 13:113510372:C:G | S391R | 0.998 |
| 13:113548394:G:T | S621I | 0.998 |
| 13:113498468:G:C | A191P | 0.997 |
| 13:113501828:G:A | G298D | 0.997 |
| 13:113501843:G:A | G303D | 0.997 |
| 13:113510355:T:C | C386R | 0.997 |
| 13:113539507:G:A | G564R | 0.997 |
| 13:113539507:G:C | G564R | 0.997 |
| 13:113547300:G:A | G564E | 0.997 |
| 13:113496017:G:C | A146P | 0.996 |
| 13:113501855:G:A | G307E | 0.996 |
| 13:113539393:T:C | C526R | 0.996 |
| 13:113548382:T:C | L617P | 0.996 |
| 13:113548385:C:A | A618D | 0.996 |
| 13:113501797:T:C | C288R | 0.995 |
| 13:113501842:G:C | G303R | 0.995 |
| 13:113501854:G:A | G307R | 0.995 |
| 13:113501854:G:C | G307R | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000018980 (13:113539214 A>G), RS1000020608 (13:113511891 A>C), RS1000051499 (13:113538967 T>C), RS1000097046 (13:113501498 C>T), RS1000150993 (13:113501335 A>C), RS1000277828 (13:113534476 T>C), RS1000297709 (13:113520163 C>T), RS1000340230 (13:113522888 C>G), RS1000402464 (13:113490815 C>A,T), RS1000413911 (13:113490610 T>C), RS1000534909 (13:113543945 G>A), RS1000608133 (13:113518057 A>G), RS1000843184 (13:113533649 G>A), RS1000879719 (13:113533348 G>A), RS1000932988 (13:113528540 C>G,T)
Disease associations
OMIM: gene MIM:617134 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Fuchs’ endothelial dystrophy | Limited | Autosomal dominant |
Mondo (1): Fuchs’ endothelial dystrophy (MONDO:0005321)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003125_10 | Influenza A (H1N1) infection | 5.000000e-08 |
| GCST010796_5456 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_5457 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST012033_15 | Sleep (1/3-day periodicity) | 8.000000e-09 |
| GCST90002390_199 | Mean corpuscular hemoglobin | 2.000000e-11 |
| GCST90002396_557 | Mean reticulocyte volume | 6.000000e-09 |
| GCST90002399_349 | Neutrophil percentage of white cells | 4.000000e-13 |
| GCST90002407_615 | White blood cell count | 3.000000e-21 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001488 | influenza A (H1N1) |
| EFO:0004327 | electrocardiography |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007990 | neutrophil percentage of leukocytes |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D005642 | Fuchs’ Endothelial Dystrophy | C11.204.236.438; C11.270.162.438; C16.320.290.162.410 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | increases expression | 4 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tetrachlorodibenzodioxin | affects expression, increases expression | 2 |
| TAK-243 | increases sumoylation | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| ICG 001 | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Zoledronic Acid | increases expression | 1 |
| Fulvestrant | increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Cisplatin | decreases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
| Ozone | increases abundance, affects expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
46 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00781027 | PHASE4 | COMPLETED | Fuchs’ Torsional Phaco Study |
| NCT03249337 | PHASE4 | RECRUITING | Glanatec(R) for Descemet Stripping in Fuch’s Endothelial Dystrophy |
| NCT05716945 | PHASE4 | RECRUITING | The OPTIMISE Study |
| NCT03248037 | PHASE3 | COMPLETED | Trial of Netarsudil for Prevention of Corticosteroid-induced Intraocular Pressure Elevation |
| NCT05275972 | PHASE3 | RECRUITING | Descemet Endothelial Thickness Comparison Trial II |
| NCT06048380 | PHASE3 | RECRUITING | The Effects of Ripasudil in Patients With FED Undergoing Femtosecond Laser Assisted Cataract Surgery |
| NCT02834260 | PHASE2 | COMPLETED | Immunosuppression During Penetrating Keratoplasty, Using a Subconjunctival Implant Releasing Dexamethasone : Tolerance and Safety Pilot Study |
| NCT03575130 | PHASE2 | UNKNOWN | Ripasudil 0.4% Eye Drops in Fuchs Endothelial Corneal Dystrophy |
| NCT03813056 | PHASE2 | UNKNOWN | Ripasudil for Enhanced Corneal Clearing Following Descemet Membrane Endothelial Keratoplasty in Fuchs’ Dystrophy |
| NCT04676737 | PHASE2 | COMPLETED | TTHX1114(NM141) in Combination With DWEK/DSO |
| NCT04191629 | PHASE1 | UNKNOWN | Phase 1 Study to Evaluate the Safety and Tolerability of EO1404 in the Treatment of Corneal Edema |
| NCT04319848 | PHASE1 | RECRUITING | Safety and Efficacy of Tissue Engineered Endothelial Keratoplasty |
| NCT05636579 | PHASE1 | RECRUITING | Study to Assess Safety and Tolerability of Multiple Doses of EO2002 |
| NCT07325097 | PHASE1 | RECRUITING | PVEK Corneal Implant For Treatment of Corneal Edema |
| NCT03971357 | PHASE2/PHASE3 | TERMINATED | Trial of Netarsudil for Acceleration of Corneal Endothelial Restoration |
| NCT04018417 | PHASE2/PHASE3 | WITHDRAWN | Evaluation of Amphotericin B in Optisol-GS for Prevention of Post-Keratoplasty Fungal Infections. |
| NCT04051463 | PHASE2/PHASE3 | COMPLETED | Rhopressa for Corneal Edema Associated With Fuchs Dystrophy |
| NCT03275896 | EARLY_PHASE1 | UNKNOWN | Evaluation of the Efficacy of Descemet Membrane Transplantation for the Treatment of Fuchs’ Endothelial Dystrophy |
| NCT04057053 | EARLY_PHASE1 | COMPLETED | Netarsudil Use After Descemetorhexis Without Endothelial Keratoplasty |
| NCT04752020 | EARLY_PHASE1 | COMPLETED | Netarsudil Use After Descemtorhexis Without Endothelial Keratoplasty |
| NCT00624221 | Not specified | COMPLETED | Study of Eye Bank Pre-cut Donor Grafts for Endothelial Keratoplasty |
| NCT01206127 | Not specified | UNKNOWN | DSAEK- Postoperative Positioning and Transplant Dislocation |
| NCT01361282 | Not specified | TERMINATED | Using the Optovue OCT to Select IOL Power |
| NCT01586234 | Not specified | TERMINATED | OCT-guided DSAEK Graft Shaping and Smoothing |
| NCT01795001 | Not specified | COMPLETED | The Molecular Pathogenesis of Late-onset Fuchs’ Endothelial Corneal Dystrophy |
| NCT02118922 | Not specified | RECRUITING | A Study to Test the Diagnostic Potential of Brillouin Microscopy for Corneal Ectasia |
| NCT02332109 | Not specified | COMPLETED | ODM 5 in the Treatment of Corneal Edematous Fuchs’ Endothelial Dystrophy |
| NCT02423161 | Not specified | COMPLETED | PIONEER: Intraoperative and Perioperative OCT Study |
| NCT02423213 | Not specified | RECRUITING | DISCOVER Study: Microscope-integrated Intraoperative OCT Study |
| NCT02470793 | Not specified | COMPLETED | Technique And Results In Endothelial Keratoplasty |
| NCT02542644 | Not specified | COMPLETED | Assessment of Corneal Graft Attachment in Patients With Fuchs Endothelial Corneal Dystrophy Following DMEK Using Ultra-high Resolution OCT |
| NCT02793310 | Not specified | COMPLETED | DMEK Versus DSAEK Study |
| NCT02849808 | Not specified | COMPLETED | Long Term Cornea Graft Survival Study |
| NCT02875145 | Not specified | COMPLETED | Impact of Cataract Surgery on Keratoplasty Graft Survival |
| NCT03407755 | Not specified | UNKNOWN | Air Versus SF6 for Descemet’s Membrane Endothelial Keratoplasty (DMEK) |
| NCT04072029 | Not specified | COMPLETED | Risk Assessment for Progression to DMEK Following Cataract Surgery in Fuchs Endothelial Corneal Dystrophy |
| NCT04140422 | Not specified | COMPLETED | Eye Drops for Early Morning-Associated Corneal Swelling of the Cornea |
| NCT04417959 | Not specified | COMPLETED | A Comparison of Visual Functions and Side-effects After DSAEK or DMEK for Fuchs’ Endothelial Dystrophy |
| NCT04420429 | Not specified | COMPLETED | The Effect Of Preoperative Parameters On Success After DMEK Surgery |
| NCT05134480 | Not specified | COMPLETED | Impact of Donor Diabetes on DMEK Success and Endothelial Cell Loss |
Related Atlas pages
- Associated diseases: Fuchs’ endothelial dystrophy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Fuchs’ endothelial dystrophy