SLCO4A1-AS2

Summary

SLCO4A1-AS2 (SLCO4A1 antisense RNA 2, HGNC:56052) is a long non-coding RNA gene on chromosome 20q13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56052
Approved symbol	SLCO4A1-AS2
Name	SLCO4A1 antisense RNA 2
Location	20q13.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000277496
Ensembl biotype	lncRNA
Entrez	101928465
RNAcentral	URS00026A1C04 — lncRNA, 2943 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000617703

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000617703 — 1 exons

Exon	Start	End
ENSE00003711650	62648961	62650767

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 86.02.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lower esophagus mucosa	UBERON:0035834	86.02	gold quality
blood	UBERON:0000178	78.40	gold quality
granulocyte	CL:0000094	75.76	gold quality
lymph node	UBERON:0000029	74.80	gold quality
bone marrow cell	CL:0002092	74.49	gold quality
spleen	UBERON:0002106	73.83	gold quality
body of stomach	UBERON:0001161	73.36	gold quality
small intestine Peyer’s patch	UBERON:0003454	72.29	gold quality
small intestine	UBERON:0002108	72.21	gold quality
stomach	UBERON:0000945	72.07	gold quality
esophagus mucosa	UBERON:0002469	71.58	gold quality
fundus of stomach	UBERON:0001160	71.47	gold quality
leukocyte	CL:0000738	71.04	gold quality
vermiform appendix	UBERON:0001154	70.91	gold quality
skin of abdomen	UBERON:0001416	70.47	gold quality
monocyte	CL:0000576	70.36	gold quality
saliva-secreting gland	UBERON:0001044	70.36	gold quality
tonsil	UBERON:0002372	70.11	gold quality
colonic epithelium	UBERON:0000397	70.08	gold quality
minor salivary gland	UBERON:0001830	70.04	gold quality
duodenum	UBERON:0002114	70.04	gold quality
zone of skin	UBERON:0000014	69.99	gold quality
skin of leg	UBERON:0001511	69.56	gold quality
mucosa of transverse colon	UBERON:0004991	69.05	gold quality
skeletal muscle tissue	UBERON:0001134	69.02	gold quality
urinary bladder	UBERON:0001255	68.39	gold quality
rectum	UBERON:0001052	68.26	gold quality
muscle tissue	UBERON:0002385	67.91	gold quality
gastrocnemius	UBERON:0001388	67.50	gold quality
transverse colon	UBERON:0001157	67.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.01

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.