SLCO5A1-AS1

Summary

SLCO5A1-AS1 (SLCO5A1 antisense RNA 1, HGNC:55595) is a long non-coding RNA gene on chromosome 8q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55595
Approved symbol	SLCO5A1-AS1
Name	SLCO5A1 antisense RNA 1
Location	8q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246528
Ensembl biotype	lncRNA
Entrez	121233925
RNAcentral	URS00026A265A — lncRNA, 1286 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000501104, ENST00000528800, ENST00000530194, ENST00000533300, ENST00000752349, ENST00000752350, ENST00000752351, ENST00000752352, ENST00000752353

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501104 — 2 exons

Exon	Start	End
ENSE00002148522	69834087	69834206
ENSE00004098355	69836639	69837855

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 88.19.

Top tissues by expression

227 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.19	silver quality
cortical plate	UBERON:0005343	80.33	gold quality
ganglionic eminence	UBERON:0004023	78.21	gold quality
bone marrow cell	CL:0002092	76.04	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.83	gold quality
islet of Langerhans	UBERON:0000006	71.10	gold quality
ventricular zone	UBERON:0003053	70.01	gold quality
muscle of leg	UBERON:0001383	67.46	gold quality
apex of heart	UBERON:0002098	67.13	gold quality
heart left ventricle	UBERON:0002084	67.10	gold quality
gastrocnemius	UBERON:0001388	66.69	gold quality
sural nerve	UBERON:0015488	66.68	gold quality
cardiac ventricle	UBERON:0002082	66.43	gold quality
right atrium auricular region	UBERON:0006631	66.08	gold quality
tibial artery	UBERON:0007610	65.54	gold quality
popliteal artery	UBERON:0002250	65.47	gold quality
cardiac atrium	UBERON:0002081	65.42	gold quality
vermiform appendix	UBERON:0001154	64.78	gold quality
lymph node	UBERON:0000029	64.72	gold quality
heart	UBERON:0000948	64.72	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.13	gold quality
aorta	UBERON:0000947	63.07	gold quality
mucosa of stomach	UBERON:0001199	62.97	gold quality
right coronary artery	UBERON:0001625	62.74	gold quality
adenohypophysis	UBERON:0002196	62.03	gold quality
colonic epithelium	UBERON:0000397	61.66	silver quality
pituitary gland	UBERON:0000007	61.58	gold quality
descending thoracic aorta	UBERON:0002345	60.74	gold quality
thoracic aorta	UBERON:0001515	60.21	gold quality
ascending aorta	UBERON:0001496	60.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.71

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.