SLCO6A1-DT

Summary

SLCO6A1-DT (SLCO6A1 divergent transcript, HGNC:59103) is a long non-coding RNA gene on chromosome 5q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59103
Approved symbol	SLCO6A1-DT
Name	SLCO6A1 divergent transcript
Location	5q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249017
Ensembl biotype	lncRNA
Entrez	124901035

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000502494, ENST00000509656

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502494 — 2 exons

Exon	Start	End
ENSE00002064244	102505428	102505668
ENSE00002087493	102500541	102500826

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 82.28.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.28	silver quality
left testis	UBERON:0004533	65.72	gold quality
testis	UBERON:0000473	65.51	gold quality
right testis	UBERON:0004534	65.38	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.72	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.51	gold quality
multicellular organism	UBERON:0000468	60.05	gold quality
blood	UBERON:0000178	58.06	gold quality
gastrocnemius	UBERON:0001388	58.01	gold quality
placenta	UBERON:0001987	56.57	gold quality
monocyte	CL:0000576	54.26	gold quality
tibial artery	UBERON:0007610	51.85	gold quality
cerebellar hemisphere	UBERON:0002245	48.72	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.54	gold quality
adult mammalian kidney	UBERON:0000082	48.34	gold quality
body of stomach	UBERON:0001161	47.65	gold quality
thoracic mammary gland	UBERON:0005200	47.38	gold quality
esophagus mucosa	UBERON:0002469	44.71	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.48	gold quality
muscle layer of sigmoid colon	UBERON:0035805	44.34	gold quality
transverse colon	UBERON:0001157	43.15	silver quality
right atrium auricular region	UBERON:0006631	42.57	silver quality
ascending aorta	UBERON:0001496	41.90	gold quality
Ammon’s horn	UBERON:0001954	41.88	gold quality
skin of leg	UBERON:0001511	41.27	gold quality
hypothalamus	UBERON:0001898	41.07	silver quality
spleen	UBERON:0002106	40.31	silver quality
left lobe of thyroid gland	UBERON:0001120	40.17	silver quality
tibial nerve	UBERON:0001323	39.97	gold quality
skin of abdomen	UBERON:0001416	39.31	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.