SLIT1-AS1

Summary

SLIT1-AS1 (SLIT1 antisense RNA 1, HGNC:51198) is a long non-coding RNA gene on chromosome 10q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51198
Approved symbol	SLIT1-AS1
Name	SLIT1 antisense RNA 1
Location	10q24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234855
Ensembl biotype	lncRNA
Entrez	100505540
RNAcentral	URS00005517BB — lncRNA, 689 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000424428, ENST00000661744, ENST00000669265, ENST00000722161

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424428 — 3 exons

Exon	Start	End
ENSE00001650670	97102756	97103110
ENSE00001741849	97103320	97103491
ENSE00001788275	97103586	97103747

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 88.78.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0167 / max 12.6304, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
106423	0.0139	3
205958	0.0029	2

Top tissues by expression

166 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	88.78	gold quality
left testis	UBERON:0004533	87.32	gold quality
right testis	UBERON:0004534	86.88	gold quality
testis	UBERON:0000473	84.32	gold quality
pancreatic ductal cell	CL:0002079	79.50	silver quality
epithelial cell of pancreas	CL:0000083	73.19	gold quality
upper arm skin	UBERON:0004263	71.09	gold quality
cerebellar vermis	UBERON:0004720	70.82	silver quality
kidney epithelium	UBERON:0004819	68.52	gold quality
superficial temporal artery	UBERON:0001614	64.89	gold quality
trabecular bone tissue	UBERON:0002483	64.51	gold quality
vena cava	UBERON:0004087	63.67	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	63.45	gold quality
layer of synovial tissue	UBERON:0007616	63.25	gold quality
adult organism	UBERON:0007023	62.27	gold quality
pons	UBERON:0000988	62.24	silver quality
pharyngeal mucosa	UBERON:0000355	61.89	gold quality
body of tongue	UBERON:0011876	61.76	gold quality
thymus	UBERON:0002370	61.57	gold quality
saphenous vein	UBERON:0007318	61.55	gold quality
skeletal muscle tissue	UBERON:0001134	61.51	gold quality
substantia nigra pars reticulata	UBERON:0001966	61.42	gold quality
pericardium	UBERON:0002407	61.23	gold quality
nasal cavity epithelium	UBERON:0005384	61.23	gold quality
lateral globus pallidus	UBERON:0002476	61.17	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	61.12	gold quality
lymph node	UBERON:0000029	61.08	gold quality
tongue	UBERON:0001723	61.02	gold quality
nipple	UBERON:0002030	60.88	gold quality
cardia of stomach	UBERON:0001162	60.66	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.