SLIT3-AS2

Summary

SLIT3-AS2 (SLIT3 antisense RNA 2, HGNC:40551) is a long non-coding RNA gene on chromosome 5q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40551
Approved symbol	SLIT3-AS2
Name	SLIT3 antisense RNA 2
Location	5q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254042
Ensembl biotype	lncRNA
Entrez	101927969
RNAcentral	URS00008121E8 — lncRNA, 1949 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000521870, ENST00000522615, ENST00000663926

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000521870 — 3 exons

Exon	Start	End
ENSE00002094921	168708437	168708647
ENSE00002137918	168710055	168710081
ENSE00002139261	168706927	168707267

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 73.80.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	73.80	gold quality
colonic epithelium	UBERON:0000397	70.02	gold quality
duodenum	UBERON:0002114	68.09	gold quality
skeletal muscle tissue	UBERON:0001134	67.85	silver quality
mucosa of transverse colon	UBERON:0004991	67.04	gold quality
sural nerve	UBERON:0015488	66.30	gold quality
liver	UBERON:0002107	60.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.10	silver quality
rectum	UBERON:0001052	59.71	gold quality
transverse colon	UBERON:0001157	59.31	gold quality
right lobe of liver	UBERON:0001114	58.08	gold quality
adrenal tissue	UBERON:0018303	56.63	gold quality
islet of Langerhans	UBERON:0000006	55.82	gold quality
colon	UBERON:0001155	55.62	gold quality
intestine	UBERON:0000160	54.99	gold quality
thoracic mammary gland	UBERON:0005200	54.21	gold quality
corpus callosum	UBERON:0002336	53.37	silver quality
small intestine	UBERON:0002108	53.07	gold quality
calcaneal tendon	UBERON:0003701	52.52	silver quality
cerebellum	UBERON:0002037	52.14	gold quality
cerebellar cortex	UBERON:0002129	52.14	gold quality
cerebellar hemisphere	UBERON:0002245	52.08	gold quality
right hemisphere of cerebellum	UBERON:0014890	51.82	gold quality
prefrontal cortex	UBERON:0000451	51.78	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.10	gold quality
urinary bladder	UBERON:0001255	50.64	gold quality
kidney	UBERON:0002113	50.37	gold quality
blood	UBERON:0000178	49.62	silver quality
adrenal gland	UBERON:0002369	49.53	gold quality
left adrenal gland	UBERON:0001234	49.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.