SMAD7
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Summary
SMAD7 (SMAD family member 7, HGNC:6773) is a protein-coding gene on chromosome 18q21.1, encoding SMAD family member 7 (O15105). Antagonist of signaling by TGF-beta (transforming growth factor) type 1 receptor superfamily members; has been shown to inhibit TGF-beta (Transforming growth factor) and activin signaling by associating with their receptors thus preventing SMAD2 access.
The protein encoded by this gene is a nuclear protein that binds the E3 ubiquitin ligase SMURF2. Upon binding, this complex translocates to the cytoplasm, where it interacts with TGF-beta receptor type-1 (TGFBR1), leading to the degradation of both the encoded protein and TGFBR1. Expression of this gene is induced by TGFBR1. Variations in this gene are a cause of susceptibility to colorectal cancer type 3 (CRCS3). Several transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 4092 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital heart disease (Limited, ClinGen) — +1 more curated relationship
- GWAS associations: 50
- Clinical variants (ClinVar): 52 total
- Phenotypes (HPO): 1
- Transcription factor: yes — 71 downstream targets (CollecTRI)
- MANE Select transcript:
NM_005904
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6773 |
| Approved symbol | SMAD7 |
| Name | SMAD family member 7 |
| Location | 18q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000101665 |
| Ensembl biotype | protein_coding |
| OMIM | 602932 |
| Entrez | 4092 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 6 protein_coding, 3 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000262158, ENST00000545051, ENST00000585986, ENST00000586093, ENST00000587336, ENST00000588190, ENST00000589634, ENST00000591805, ENST00000911789, ENST00000951831
RefSeq mRNA: 4 — MANE Select: NM_005904
NM_001190821, NM_001190822, NM_001190823, NM_005904
CCDS: CCDS11936, CCDS54186, CCDS59317
Canonical transcript exons
ENST00000262158 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001243787 | 48919853 | 48921910 |
| ENSE00001243795 | 48949812 | 48950965 |
| ENSE00003472239 | 48942481 | 48942555 |
| ENSE00003518942 | 48948384 | 48948437 |
Expression profiles
Bgee: expression breadth ubiquitous, 265 present calls, max score 96.68.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.7864 / max 668.6443, expressed in 1767 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 171888 | 24.4398 | 1753 |
| 171887 | 2.8969 | 1221 |
| 171879 | 0.6025 | 203 |
| 171886 | 0.2534 | 88 |
| 171881 | 0.2001 | 78 |
| 171880 | 0.1834 | 87 |
| 171882 | 0.1268 | 29 |
| 171883 | 0.0835 | 28 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| popliteal artery | UBERON:0002250 | 96.68 | gold quality |
| tibial artery | UBERON:0007610 | 96.67 | gold quality |
| aorta | UBERON:0000947 | 95.77 | gold quality |
| saphenous vein | UBERON:0007318 | 95.71 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 95.56 | gold quality |
| right atrium auricular region | UBERON:0006631 | 95.55 | gold quality |
| cardiac atrium | UBERON:0002081 | 95.41 | gold quality |
| ascending aorta | UBERON:0001496 | 94.80 | gold quality |
| thoracic aorta | UBERON:0001515 | 94.64 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 94.15 | gold quality |
| right lung | UBERON:0002167 | 93.65 | gold quality |
| left coronary artery | UBERON:0001626 | 93.27 | gold quality |
| right coronary artery | UBERON:0001625 | 93.02 | gold quality |
| coronary artery | UBERON:0001621 | 92.87 | gold quality |
| vena cava | UBERON:0004087 | 92.37 | gold quality |
| cartilage tissue | UBERON:0002418 | 91.39 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 91.33 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 90.66 | gold quality |
| omental fat pad | UBERON:0010414 | 90.58 | gold quality |
| peritoneum | UBERON:0002358 | 90.53 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 90.45 | gold quality |
| upper lobe of lung | UBERON:0008948 | 89.89 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 89.83 | gold quality |
| metanephros cortex | UBERON:0010533 | 89.72 | gold quality |
| thyroid gland | UBERON:0002046 | 89.66 | gold quality |
| heart | UBERON:0000948 | 88.92 | gold quality |
| gall bladder | UBERON:0002110 | 88.77 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.34 | gold quality |
| endocervix | UBERON:0000458 | 88.27 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 87.98 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7052 | yes | 189.28 |
| E-GEOD-135922 | yes | 22.52 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
71 targets.
| Target | Regulation |
|---|---|
| ACTA2 | |
| ACTG2 | Unknown |
| ACVR1B | |
| ADAM2 | |
| APC | |
| BCL2L11 | Unknown |
| BMP4 | |
| CASP8 | Unknown |
| CAT | |
| CCN2 | Repression |
| CD79A | |
| CDH2 | Repression |
| CDK1 | Repression |
| CDKN1A | Repression |
| CDKN2B | Repression |
| CEL | |
| CHRD | Activation |
| COL1A1 | Repression |
| COL1A2 | Repression |
| COL3A1 | Repression |
| COL5A2 | Repression |
| COL6A2 | Repression |
| COL6A3 | Repression |
| CTNNB1 | Activation |
| CYP17A1 | |
| E2F1 | Repression |
| FN1 | Unknown |
| FSHB | Unknown |
| GAST | Unknown |
| HAMP | Unknown |
Upstream regulators (CollecTRI, top): AP1, BMP6, EP300, ETV1, FOS, GGCX, GRHL3, HAMP, HDAC1, HDAC3, JUN, KDM5B, KLF10, KLF11, KLF13, MECOM, MTA1, MYC, NFKB, NR0B2, NR2C2, OLIG1, OVOL2, PRMT5, RELA, SKI, SKIL, SMAD1, SMAD2, SMAD3, SMAD4, SMAD5, SMAD7, SP1, TBL1XR1, TFE3, YY1, ZNF165
miRNA regulators (miRDB)
118 targeting SMAD7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
Literature-anchored findings (GeneRIF, showing 40)
- plasma membrane localization of Smad7 by Smurf1 requires the C2 domain of Smurf1 and is essential for the inhibitory effect of Smad7 in the transforming growth factor-beta signaling pathway (PMID:12151385)
- Smad7 is activated in injured podocytes in vitro and in human glomerular disease and participates in negative control of TGF-beta/Smad signaling in addition to its pro-apoptotic activity. (PMID:12397035)
- Smad6 and Smad7 regulate thrombomodulin-dependent activation of protein C (PMID:12407115)
- CRM1-dependent nuclear export of Smurf1 is essential for the negative regulation of TGF-beta signaling by Smad7. (PMID:12519765)
- Smad7 may act as a scaffolding protein and facilitate TAK1- and MKK3-mediated activation of p38 (PMID:12589052)
- attenuation of transforming growth factor-beta signaling by activating Smad7 transcription may proceed not only through TGF-beta receptor-regulated Smad proteins but also an independent pathway involving transcription factor ER81 and TAK1 protein kinase (PMID:12947087)
- Smad7 was overexpressed in ARO anaplastic cell line, the most malignant follicular thyroid carcinoma. (PMID:12952364)
- GADD34-PP1c recruited by Smad7 inhibits TGFbeta-induced cell cycle arrest. (PMID:14718519)
- Smad7 and Smurf1 have roles in regulation of TGF-beta signaling in scleroderma fibroblasts (PMID:14722617)
- In Helicobacter pylori-infected gastric mucosa, interferon-gamma induces expression of Smad7, which then prevents endogenous TGF-beta 1 from down-regulating ongoing tissue-damaging Th1 response. (PMID:14988821)
- Jab1/CSN5 as an adapter that targets Smad7 for degradation, thus releasing Smad7-mediated suppression of TGF-beta1 signaling. (PMID:14993265)
- Overexpression of SMAD7 inhibited the activity of the proliferation-specific promoters for the keratin 14 and cdc2 genes and reduced the expression of the mRNA for the proliferation-specific genes cdc2 and E2F1. (PMID:15023526)
- tetradecanoylphorbol-13-acetate down-regulates Smad6 expression presumably via PKCmu-ERK-dependent pathway and up-regulates Smad7 expression via PKCmu-dependent mechanism(s) which need no MAPK and NF-kappaB activation (PMID:15033458)
- Enhanced expression of the TGF-beta signaling inhibitor Smad7 may present one of the novel mechanisms of TGF-beta resistance in human gastric carcinomas. (PMID:15033661)
- novel role for Smad7 in TGF-beta-dependent activation of Rho GTPases (PMID:15075243)
- Smad7 is repressed by ski (PMID:15128733)
- dual signaling pathways involving TGF-beta1, an antiapoptotic pathway mediated by the Smad pathway involving p21, and an apoptosis-permissive pathway mediated in part by p38 MAPK. (PMID:15132952)
- WWP1 negatively regulates TGF-beta signaling in cooperation with Smad7. (PMID:15221015)
- identified target genes regulated by Smad7 in primitive hematopoietic cells that may control process of modulating the cell fate decisions of primary multipotent human repopulating cells (PMID:15498852)
- The regulation in chondrocytes of Smad6 and Smad7 expression by IL-1beta suggests a potentially important role of IL-1beta signaling in chondrocytes, via indirect influencing of the bone morphogenetic protein/TGFbeta signaling cascade. (PMID:15529348)
- induction of Smad7 gene expression by UV irradiation is mediated via induction of the transcription factor AP-1 in human skin fibroblasts (PMID:15579469)
- Abeta1-42 may play an important role in the negative regulation of TGF-beta1-induced MMP-2 production via Smad7 expression (PMID:15632190)
- Smad7 appears to be upregulated in endometrial cancers compared to normal endometrium. (PMID:15661223)
- Physical association of Smad7 and beta-catenin was found to be important for TGF-beta-induced apoptosis. (PMID:15684397)
- expression of Smad7 is crucial for 2-ME-induced apoptosis in human prostate cancer cells (PMID:15708859)
- Smad6 and Smad7 expression affects the progression of early lesions of esophageal SCC and indicates a poor prognosis. (PMID:15736400)
- autocrine TGF-beta/Smad signaling is involved in contractility and matrix gene expression of fibroblasts from normal and hypertrophic scars; Smad7 inhibits these processes and may exert beneficial effects on excessive scar formation (PMID:15788410)
- UV-induced down-regulation of TbetaRII and the concerted over-expression of Smad7 may trigger the inhibition of the TGF-beta-induced phosphorylation of Smad2. (PMID:15811425)
- Smad7 acts to functionally inactivate RB and de-repress E2F without blocking the activation of TbetaRI and the nuclear translocation of Smad2/3, allowing TGF-beta1 to exert effects in a cancer cell that is resistant to TGF-beta1-mediated growth inhibition (PMID:15811853)
- the degradation of Smad7 is regulated by the balance between acetylation, deacetylation and ubiquitination (PMID:15831498)
- In mature human B cells, BMP-6 inhibited cell growth, and rapidly induced phosphorylation of Smad8. (PMID:15877825)
- SMAD7 induces tumorigenicity by blocking TGF-beta-induced growth inhibition and apoptosis. (PMID:15922743)
- Various cellular functions implicated in melanoma development may be under control of autocrine TGF-beta and may be inhibited by Smad7 expression (PMID:16007121)
- TGF-beta1 and bleomycin intracellular signaling through autocrine regulation of Smad 3 binding to the proximal promoter of the Smad 7 gene (PMID:16187293)
- TGF-beta is involved in the physiological loss of gastric epithelial cells by activating apoptosis mediated by Smad7, Bim, and caspase-9 (PMID:16260615)
- Smad7 is not transcriptionally regulated in gut but its increase in inflammatory bowel disease is due to posttranscriptional acetylation and stabilization by p300, which prevents Smad7 ubiquitination and degradation in the proteasome (PMID:16285943)
- TGFbeta-mediated phosphorylation of IkappaB-alpha and NF-kappaB nuclear translocation and DNA binding activity are inhibited by Smad7 (PMID:16288847)
- SnoN also seems to regulate negatively the TGF-beta-responsive smad7 gene by binding and repressing its promoter in a similar way to Ski (PMID:16442497)
- Axin and Arkadia cooperate with each other in promoting Smad7 ubiquitination. (PMID:16601693)
- analysis of the WW domain recognition motif for the interaction of Smad7 and the E3 ubiquitin ligase Smurf2 (PMID:16641086)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | smad7 | ENSDARG00000016858 |
| mus_musculus | Smad7 | ENSMUSG00000025880 |
| rattus_norvegicus | Smad7 | ENSRNOG00000018359 |
| drosophila_melanogaster | Dad | FBGN0020493 |
| caenorhabditis_elegans | WBGENE00000910 | |
| caenorhabditis_elegans | tag-68 | WBGENE00006445 |
Paralogs (7): SMAD5 (ENSG00000113658), SMAD9 (ENSG00000120693), SMAD6 (ENSG00000137834), SMAD4 (ENSG00000141646), SMAD3 (ENSG00000166949), SMAD1 (ENSG00000170365), SMAD2 (ENSG00000175387)
Protein
Protein identifiers
SMAD family member 7 — O15105 (reviewed: O15105)
Alternative names: Mothers against decapentaplegic homolog 7, Mothers against decapentaplegic homolog 8
All UniProt accessions (2): O15105, K7EKF0
UniProt curated annotations — full annotation on UniProt →
Function. Antagonist of signaling by TGF-beta (transforming growth factor) type 1 receptor superfamily members; has been shown to inhibit TGF-beta (Transforming growth factor) and activin signaling by associating with their receptors thus preventing SMAD2 access. Functions as an adapter to recruit SMURF2 to the TGF-beta receptor complex. Also acts by recruiting the PPP1R15A-PP1 complex to TGFBR1, which promotes its dephosphorylation. Positively regulates PDPK1 kinase activity by stimulating its dissociation from the 14-3-3 protein YWHAQ which acts as a negative regulator.
Subunit / interactions. Interacts with WWP1. Interacts with COPS5. Interacts with NEDD4L. Interacts with STAMBP. Interacts with RNF111, AXIN1 and AXIN2. Interacts with PPP1R15A. Interacts (via MH2 domain) with EP300. Interacts with ACVR1B, SMURF1, SMURF2 and TGFBR1; SMAD7 recruits SMURF1 and SMURF2 to the TGF-beta receptor and regulates its degradation. Interacts with PDPK1 (via PH domain). Interacts with TSC22D1/TSC-22; the interaction requires TGF-beta and the interaction is inhibited by TGFBR1.
Subcellular location. Nucleus. Cytoplasm.
Tissue specificity. Ubiquitous with higher expression in the lung and vascular endothelium.
Post-translational modifications. Phosphorylation on Ser-249 does not affect its stability, nuclear localization or inhibitory function in TGFB signaling; however it affects its ability to regulate transcription. Phosphorylated by PDPK1. Ubiquitinated by WWP1. Polyubiquitinated by RNF111, which is enhanced by AXIN1 and promotes proteasomal degradation. In response to TGF-beta, ubiquitinated by SMURF1; which promotes its degradation. Acetylation prevents ubiquitination and degradation mediated by SMURF1.
Disease relevance. Colorectal cancer 3 (CRCS3) [MIM:612229] A complex disease characterized by malignant lesions arising from the inner wall of the large intestine (the colon) and the rectum. Genetic alterations are often associated with progression from premalignant lesion (adenoma) to invasive adenocarcinoma. Risk factors for cancer of the colon and rectum include colon polyps, long-standing ulcerative colitis, and genetic family history. Disease susceptibility is associated with variants affecting the gene represented in this entry.
Induction. By TGFB1.
Similarity. Belongs to the dwarfin/SMAD family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15105-1 | 1 | yes |
| O15105-2 | 2 | |
| O15105-3 | 3 |
RefSeq proteins (3): NP_001177750, NP_001177751, NP_005895* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001132 | SMAD_dom | Domain |
| IPR003619 | MAD_homology1_Dwarfin-type | Domain |
| IPR008984 | SMAD_FHA_dom_sf | Homologous_superfamily |
| IPR013019 | MAD_homology_MH1 | Domain |
| IPR013790 | SMAD/Dwarfins | Family |
| IPR017855 | SMAD-like_dom_sf | Homologous_superfamily |
| IPR036578 | SMAD_MH1_sf | Homologous_superfamily |
Pfam: PF03165, PF03166
UniProt features (26 total): mutagenesis site 5, binding site 4, modified residue 3, domain 2, cross-link 2, splice variant 2, strand 2, region of interest 2, chain 1, sequence conflict 1, short sequence motif 1, compositionally biased region 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2DJY | SOLUTION NMR | |
| 2KXQ | SOLUTION NMR | |
| 2LTV | SOLUTION NMR | |
| 2LTW | SOLUTION NMR | |
| 2LTX | SOLUTION NMR | |
| 2LTY | SOLUTION NMR | |
| 2LTZ | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15105-F1 | 75.08 | 0.52 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 197; 125; 180; 192
Post-translational modifications (5): 64, 70, 249, 64, 70
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 64 | loss of acetylation, and of smurf1-dependent degradation; when associated with a-70. |
| 70 | loss of acetylation, and of smurf1-dependent degradation; when associated with a-64. |
| 207–211 | diminishes interaction with smurf2. |
| 211 | diminishes interaction with smurf2 and reduces inhibition of tgf-beta signaling. |
| 409–426 | 90% reduction in tgf-beta receptor binding. |
Function
Pathways and Gene Ontology
Reactome pathways
21 pathways
| ID | Pathway |
|---|---|
| R-HSA-201451 | Signaling by BMP |
| R-HSA-2173788 | Downregulation of TGF-beta receptor signaling |
| R-HSA-2173795 | Downregulation of SMAD2/3:SMAD4 transcriptional activity |
| R-HSA-2173796 | SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
| R-HSA-5689603 | UCH proteinases |
| R-HSA-5689880 | Ub-specific processing proteases |
| R-HSA-877300 | Interferon gamma signaling |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-162582 | Signal Transduction |
| R-HSA-168256 | Immune System |
| R-HSA-170834 | Signaling by TGF-beta Receptor Complex |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-2173789 | TGF-beta receptor signaling activates SMADs |
| R-HSA-2173793 | Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5688426 | Deubiquitination |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-9006936 | Signaling by TGFB family members |
| R-HSA-913531 | Interferon Signaling |
MSigDB gene sets: 645 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_SMAD_PROTEIN_SIGNAL_TRANSDUCTION, PID_HDAC_CLASSI_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_MEMBRANE_DEPOLARIZATION, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, GOBP_REGULATION_OF_PROTEASOMAL_UBIQUITIN_DEPENDENT_PROTEIN_CATABOLIC_PROCESS, GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_CARDIAC_SEPTUM_DEVELOPMENT, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GOBP_NEGATIVE_REGULATION_OF_ADAPTIVE_IMMUNE_RESPONSE, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION
GO Biological Process (41): negative regulation of transcription by RNA polymerase II (GO:0000122), ureteric bud development (GO:0001657), negative regulation of T cell cytokine production (GO:0002725), regulation of transcription by RNA polymerase II (GO:0006357), transforming growth factor beta receptor signaling pathway (GO:0007179), anatomical structure morphogenesis (GO:0009653), regulation of epithelial to mesenchymal transition (GO:0010717), negative regulation of epithelial to mesenchymal transition (GO:0010719), obsolete negative regulation of transcription by competitive promoter binding (GO:0010944), cell differentiation (GO:0030154), negative regulation of ossification (GO:0030279), negative regulation of cell migration (GO:0030336), negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512), negative regulation of BMP signaling pathway (GO:0030514), protein-containing complex localization (GO:0031503), positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436), negative regulation of activin receptor signaling pathway (GO:0032926), protein-containing complex disassembly (GO:0032984), adherens junction assembly (GO:0034333), response to laminar fluid shear stress (GO:0034616), artery morphogenesis (GO:0048844), protein stabilization (GO:0050821), ventricular cardiac muscle tissue morphogenesis (GO:0055010), regulation of cardiac muscle contraction (GO:0055117), regulation of ventricular cardiac muscle cell membrane depolarization (GO:0060373), negative regulation of SMAD protein signal transduction (GO:0060392), SMAD protein signal transduction (GO:0060395), ventricular septum morphogenesis (GO:0060412), negative regulation of chondrocyte proliferation (GO:1902731), positive regulation of chondrocyte hypertrophy (GO:1903043), beta-catenin destruction complex disassembly (GO:1904886), cellular response to leukemia inhibitory factor (GO:1990830), positive regulation of cell-cell adhesion mediated by cadherin (GO:2000049), negative regulation of T-helper 17 type immune response (GO:2000317), negative regulation of T-helper 17 cell differentiation (GO:2000320), regulation of DNA-templated transcription (GO:0006355), regulation of gene expression (GO:0010468), regulation of transforming growth factor beta receptor signaling pathway (GO:0017015), negative regulation of cell differentiation (GO:0045596), cellular response to growth factor stimulus (GO:0071363)
GO Molecular Function (11): transcription corepressor activity (GO:0003714), collagen binding (GO:0005518), beta-catenin binding (GO:0008013), ubiquitin protein ligase binding (GO:0031625), type I transforming growth factor beta receptor binding (GO:0034713), metal ion binding (GO:0046872), I-SMAD binding (GO:0070411), activin receptor binding (GO:0070697), transcription regulator inhibitor activity (GO:0140416), ubiquitin-like ligase-substrate adaptor activity (GO:1990756), protein binding (GO:0005515)
GO Cellular Component (13): chromatin (GO:0000785), fibrillar center (GO:0001650), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), centrosome (GO:0005813), cytosol (GO:0005829), plasma membrane (GO:0005886), protein-containing complex (GO:0032991), ciliary basal body (GO:0036064), heteromeric SMAD protein complex (GO:0071144), transcription regulator complex (GO:0005667), adherens junction (GO:0005912)
Reactome top-level categories
Rollup of top-13 pathways:
| Category | Pathways |
|---|---|
| Signaling by TGFB family members | 2 |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 2 |
| Deubiquitination | 2 |
| Signaling by TGF-beta Receptor Complex | 2 |
| TGF-beta receptor signaling activates SMADs | 1 |
| Interferon Signaling | 1 |
| Immune System | 1 |
| RNA Polymerase II Transcription | 1 |
| Generic Transcription Pathway | 1 |
| Post-translational protein modification | 1 |
| Metabolism of proteins | 1 |
| Gene expression (Transcription) | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 3 |
| transcription by RNA polymerase II | 2 |
| negative regulation of DNA-templated transcription | 2 |
| epithelial to mesenchymal transition | 2 |
| negative regulation of multicellular organismal process | 2 |
| microtubule organizing center | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| mesonephric tubule development | 1 |
| T cell cytokine production | 1 |
| negative regulation of T cell mediated immunity | 1 |
| negative regulation of cytokine production involved in immune response | 1 |
| regulation of T cell cytokine production | 1 |
| regulation of DNA-templated transcription | 1 |
| cellular response to transforming growth factor beta stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| developmental process | 1 |
| anatomical structure development | 1 |
| regulation of cell differentiation | 1 |
| regulation of epithelial to mesenchymal transition | 1 |
| negative regulation of cell differentiation | 1 |
| cellular developmental process | 1 |
| ossification | 1 |
| regulation of ossification | 1 |
| cell migration | 1 |
| regulation of cell migration | 1 |
| negative regulation of cell motility | 1 |
| transforming growth factor beta receptor signaling pathway | 1 |
| regulation of transforming growth factor beta receptor signaling pathway | 1 |
| BMP signaling pathway | 1 |
| regulation of BMP signaling pathway | 1 |
| negative regulation of cellular response to growth factor stimulus | 1 |
| macromolecule localization | 1 |
| regulation of proteasomal ubiquitin-dependent protein catabolic process | 1 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 1 |
| positive regulation of proteasomal protein catabolic process | 1 |
| positive regulation of ubiquitin-dependent protein catabolic process | 1 |
| activin receptor signaling pathway | 1 |
| regulation of activin receptor signaling pathway | 1 |
| cellular component disassembly | 1 |
Protein interactions and networks
STRING
2864 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SMAD7 | TGFBR1 | P36897 | 998 |
| SMAD7 | SMURF2 | Q9HAU4 | 998 |
| SMAD7 | SMURF1 | Q9HCE7 | 996 |
| SMAD7 | UCHL5 | Q9Y5K5 | 982 |
| SMAD7 | TGFB1 | P01137 | 978 |
| SMAD7 | RNF111 | Q6ZNA4 | 924 |
| SMAD7 | TAB2 | Q9NYJ8 | 916 |
| SMAD7 | WWP1 | Q9H0M0 | 895 |
| SMAD7 | CTNNB1 | P35222 | 887 |
| SMAD7 | TGFB2 | P08112 | 885 |
| SMAD7 | TAB3 | Q8N5C8 | 863 |
| SMAD7 | PPP1R15A | O75807 | 856 |
| SMAD7 | TGFBR2 | P37173 | 855 |
| SMAD7 | SKIL | P12756 | 850 |
| SMAD7 | AXIN1 | O15169 | 847 |
| SMAD7 | STRAP | Q9Y3F4 | 847 |
IntAct
80 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMURF2 | SMAD7 | psi-mi:“MI:0407”(direct interaction) | 0.800 |
| SMAD7 | SMURF2 | psi-mi:“MI:0407”(direct interaction) | 0.800 |
| SMAD7 | SMURF2 | psi-mi:“MI:0915”(physical association) | 0.800 |
| SMAD7 | SMURF1 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| SMAD7 | YAP1 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| SMAD7 | YAP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| YAP1 | SMAD7 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| COPS5 | SMAD7 | psi-mi:“MI:0915”(physical association) | 0.640 |
| SMAD7 | COPS5 | psi-mi:“MI:0915”(physical association) | 0.640 |
| COPS5 | SMAD7 | psi-mi:“MI:0403”(colocalization) | 0.640 |
| NEDD4L | SMAD7 | psi-mi:“MI:0407”(direct interaction) | 0.610 |
BioGRID (285): COPS5 (Affinity Capture-Western), LEF1 (Affinity Capture-Western), SMAD7 (Affinity Capture-Western), Wwp2 (Affinity Capture-Luminescence), CBL (Affinity Capture-Western), SMAD7 (Affinity Capture-Western), CBL (Reconstituted Complex), SMAD7 (Reconstituted Complex), TCF7L2 (Affinity Capture-Western), PARD3 (Reconstituted Complex), TGFBR1 (Affinity Capture-Western), NR4A1 (Affinity Capture-Western), SMAD7 (Affinity Capture-Western), SMAD7 (Affinity Capture-Western), SMURF2 (Affinity Capture-Western)
ESM2 similar proteins: A0A5F9C6I2, A2BDA5, A4IG66, A4IIM9, A9ZLX4, D3ZXK7, O00750, O14525, O15105, O15169, O15259, O15360, O35253, O54828, O70240, O88406, O88566, P49805, Q1JPG0, Q3B7M3, Q3SZD5, Q5JV73, Q5T011, Q5XJS0, Q5XPI3, Q61137, Q62925, Q66K64, Q6AYG1, Q6P1H6, Q6P2E9, Q6PFH3, Q7L4E1, Q7TP65, Q86UW9, Q86XL3, Q8BK03, Q8CDG3, Q8CF97, Q8N9B5
Diamond homologs: O15105, O35182, O35253, O43541, O88406, Q9W734, O15198, O54835, O70436, O70437, P84022, P84023, P84024, P84025, P97471, Q13485, Q15796, Q1HE26, Q1W668, Q21733, Q5R7C0, Q62432, Q8BUN5, Q9GKQ9, Q9I9P9, Q9JIW5, P42003
SIGNOR signaling
48 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SMAD7 | “up-regulates activity” | SMURF2 | relocalization |
| SMAD7 | down-regulates | TAB1 | binding |
| RNF111 | down-regulates | SMAD7 | binding |
| RNF111 | down-regulates | SMAD7 | ubiquitination |
| SMAD7 | up-regulates | PPP1R15A | binding |
| WWP1 | up-regulates | SMAD7 | binding |
| WWP1 | “up-regulates activity” | SMAD7 | relocalization |
| SMAD7 | up-regulates | CTNNB1 | |
| EP300 | up-regulates | SMAD7 | acetylation |
| ITCH | down-regulates | SMAD7 | ubiquitination |
| UCHL5 | up-regulates | SMAD7 | binding |
| SMAD7 | up-regulates | PPP1CA | binding |
| AXIN1 | down-regulates | SMAD7 | binding |
| SIRT1 | down-regulates | SMAD7 | deacetylation |
| SMAD7 | up-regulates | TAB2 | binding |
| SMAD7 | up-regulates | TAB3 | binding |
| SMAD7 | down-regulates | SMAD1 | |
| SMAD7 | “down-regulates activity” | TGFBR1 | binding |
| SMAD7 | “up-regulates activity” | SMURF1 | relocalization |
| SMURF2 | “down-regulates activity” | SMAD7 | ubiquitination |
| HDAC3 | up-regulates | SMAD7 | binding |
| SMAD7 | “form complex” | SMAD7/HDAC1/E2F-1 | binding |
| WWP1 | “up-regulates activity” | SMAD7 | ubiquitination |
| SMAD7 | “up-regulates activity” | SMURF | relocalization |
| SMURF | “down-regulates activity” | SMAD7 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 38 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by TGFB family members | 5 | 21.4× | 2e-04 |
| Signaling by WNT | 5 | 20.7× | 2e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| negative regulation of transforming growth factor beta receptor signaling pathway | 5 | 25.6× | 2e-04 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 7 | 10.7× | 3e-04 |
| negative regulation of gene expression | 5 | 10.2× | 5e-03 |
| DNA damage response | 5 | 7.9× | 9e-03 |
| protein ubiquitination | 6 | 7.3× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
52 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 37 |
| Likely benign | 9 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
886 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:48921907:GAAT:G | acceptor_gain | 1.0000 |
| 18:48921909:AT:A | acceptor_gain | 1.0000 |
| 18:48921909:ATCTA:A | acceptor_loss | 1.0000 |
| 18:48921910:TC:T | acceptor_loss | 1.0000 |
| 18:48921911:C:CC | acceptor_gain | 1.0000 |
| 18:48921911:C:CG | acceptor_loss | 1.0000 |
| 18:48921912:T:G | acceptor_loss | 1.0000 |
| 18:48942551:GTCTG:G | acceptor_gain | 1.0000 |
| 18:48942553:CTG:C | acceptor_gain | 1.0000 |
| 18:48942554:TG:T | acceptor_gain | 1.0000 |
| 18:48942563:T:TC | acceptor_gain | 1.0000 |
| 18:48942564:T:C | acceptor_gain | 1.0000 |
| 18:48942564:T:TC | acceptor_gain | 1.0000 |
| 18:48921906:GGAAT:G | acceptor_gain | 0.9900 |
| 18:48921908:AAT:A | acceptor_gain | 0.9900 |
| 18:48942475:TCTTA:T | donor_loss | 0.9900 |
| 18:48942476:CTTAC:C | donor_loss | 0.9900 |
| 18:48942477:TTAC:T | donor_loss | 0.9900 |
| 18:48942478:TAC:T | donor_loss | 0.9900 |
| 18:48942554:TGCTG:T | acceptor_loss | 0.9900 |
| 18:48942555:GCT:G | acceptor_loss | 0.9900 |
| 18:48942556:C:CC | acceptor_gain | 0.9900 |
| 18:48942557:T:C | acceptor_loss | 0.9900 |
| 18:48942558:G:C | acceptor_gain | 0.9900 |
| 18:48942558:G:GC | acceptor_gain | 0.9900 |
| 18:48942562:A:AC | acceptor_gain | 0.9900 |
| 18:48942562:A:C | acceptor_gain | 0.9900 |
| 18:48942563:T:C | acceptor_gain | 0.9900 |
| 18:48948539:G:C | donor_gain | 0.9800 |
| 18:48949806:TCTCA:T | donor_loss | 0.9800 |
AlphaMissense
2736 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:48921397:A:G | L419P | 1.000 |
| 18:48921401:A:G | W418R | 1.000 |
| 18:48921401:A:T | W418R | 1.000 |
| 18:48921402:G:C | C417W | 1.000 |
| 18:48921403:C:T | C417Y | 1.000 |
| 18:48921406:G:T | P416Q | 1.000 |
| 18:48921408:G:C | C415W | 1.000 |
| 18:48921409:C:T | C415Y | 1.000 |
| 18:48921410:A:G | C415R | 1.000 |
| 18:48921418:A:T | I412N | 1.000 |
| 18:48921428:G:C | R409G | 1.000 |
| 18:48921428:G:T | R409S | 1.000 |
| 18:48921433:T:C | Y407C | 1.000 |
| 18:48921434:A:G | Y407H | 1.000 |
| 18:48921442:C:A | G404V | 1.000 |
| 18:48921442:C:T | G404D | 1.000 |
| 18:48921443:C:A | G404C | 1.000 |
| 18:48921443:C:G | G404R | 1.000 |
| 18:48921444:C:A | W403C | 1.000 |
| 18:48921444:C:G | W403C | 1.000 |
| 18:48921445:C:A | W403L | 1.000 |
| 18:48921445:C:G | W403S | 1.000 |
| 18:48921446:A:G | W403R | 1.000 |
| 18:48921446:A:T | W403R | 1.000 |
| 18:48921448:C:A | G402V | 1.000 |
| 18:48921448:C:T | G402D | 1.000 |
| 18:48921449:C:A | G402C | 1.000 |
| 18:48921449:C:G | G402R | 1.000 |
| 18:48921449:C:T | G402S | 1.000 |
| 18:48921450:C:A | K401N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000004220 (18:48932006 C>G,T), RS1000058116 (18:48931846 T>C), RS1000116989 (18:48937150 G>A), RS1000137110 (18:48933711 G>A), RS1000147643 (18:48946662 C>T), RS1000153829 (18:48936023 C>T), RS1000180196 (18:48950789 A>G), RS1000184701 (18:48936030 A>C), RS1000200416 (18:48941499 G>A), RS1000241760 (18:48952679 T>A,C), RS1000366757 (18:48922116 C>T), RS1000373092 (18:48936262 T>C), RS1000476662 (18:48939383 A>C), RS1000517533 (18:48951873 G>A), RS1000651118 (18:48942632 A>G)
Disease associations
OMIM: gene MIM:602932 | disease phenotypes: MIM:612229
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Limited | Autosomal dominant |
| colorectal cancer, susceptibility to, 3 | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Limited | AD |
Mondo (2): colorectal cancer, susceptibility to, 3 (MONDO:0012820), congenital heart disease (MONDO:0005453)
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0003003 | Colon cancer |
GWAS associations
50 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000113_1 | Colorectal cancer | 1.000000e-12 |
| GCST000168_3 | Colorectal cancer | 8.000000e-28 |
| GCST000169_3 | Colorectal cancer | 2.000000e-06 |
| GCST001161_2 | Colorectal cancer | 1.000000e-07 |
| GCST001713_21 | Dental caries | 4.000000e-06 |
| GCST001725_58 | Inflammatory bowel disease | 1.000000e-09 |
| GCST001787_4 | Colorectal cancer | 2.000000e-10 |
| GCST002340_1 | Colorectal cancer | 3.000000e-11 |
| GCST002454_19 | Colorectal cancer | 2.000000e-08 |
| GCST002919_16 | Colorectal cancer | 4.000000e-23 |
| GCST003017_21 | Colorectal cancer | 2.000000e-15 |
| GCST003882_1 | Parental longevity (at least one long-lived parent) | 2.000000e-07 |
| GCST004601_181 | Red blood cell count | 4.000000e-09 |
| GCST004604_36 | Hematocrit | 2.000000e-10 |
| GCST004615_117 | Hemoglobin concentration | 9.000000e-10 |
| GCST005149_13 | Colorectal cancer | 9.000000e-07 |
| GCST005150_34 | Colorectal cancer | 3.000000e-07 |
| GCST005591_9 | Colorectal cancer | 3.000000e-12 |
| GCST005984_67 | Glomerular filtration rate | 1.000000e-08 |
| GCST005985_18 | Creatinine levels | 5.000000e-09 |
| GCST006061_102 | Atrial fibrillation | 9.000000e-11 |
| GCST006061_103 | Atrial fibrillation | 2.000000e-10 |
| GCST006414_38 | Atrial fibrillation | 2.000000e-11 |
| GCST006979_274 | Heel bone mineral density | 3.000000e-26 |
| GCST006979_275 | Heel bone mineral density | 3.000000e-12 |
| GCST007344_42 | Estimated glomerular filtration rate | 6.000000e-09 |
| GCST007552_20 | Colorectal cancer | 5.000000e-15 |
| GCST007552_5 | Colorectal cancer | 2.000000e-27 |
| GCST007856_41 | Colorectal cancer or advanced adenoma | 4.000000e-74 |
| GCST007876_70 | Estimated glomerular filtration rate | 5.000000e-09 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007796 | parental longevity |
| EFO:0004305 | erythrocyte count |
| EFO:0004348 | hematocrit |
| EFO:0004509 | hemoglobin measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0004327 | electrocardiography |
| EFO:0004842 | eosinophil count |
| EFO:0007991 | eosinophil percentage of leukocytes |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0004533 | alkaline phosphatase measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs4939827 | SMAD7 | 0.00 | 0 |
CTD chemical–gene interactions
86 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, affects cotreatment, increases expression | 5 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 3 |
| Resveratrol | increases expression | 3 |
| Tretinoin | increases expression | 3 |
| bisphenol A | affects cotreatment, decreases methylation, increases expression | 2 |
| manganese chloride | increases methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Air Pollutants | increases abundance, increases expression, decreases expression | 2 |
| Arsenic | affects cotreatment, decreases expression, increases abundance, affects methylation | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Calcitriol | increases expression, decreases expression, decreases reaction | 2 |
| Cisplatin | increases expression, affects cotreatment, decreases expression | 2 |
| Endosulfan | decreases expression, decreases reaction | 2 |
| Formaldehyde | decreases expression, increases expression | 2 |
| Silver | increases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Cyclosporine | decreases expression, decreases reaction | 2 |
| Aflatoxin B1 | increases methylation | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| GSK-J4 | increases expression | 1 |
| vericiguat | decreases expression, decreases reaction | 1 |
| triphenyl phosphate | affects expression | 1 |
| geraniol | increases expression | 1 |
| methylselenic acid | increases expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| tanshinone | decreases expression, decreases reaction, increases reaction | 1 |
| 3,4,5,3’,4’-pentachlorobiphenyl | increases expression | 1 |
| tobacco tar | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
Cellosaurus cell lines
12 cell lines: 6 cancer cell line, 5 embryonic stem cell, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A6H5 | SEES3-1V human SMAD7, clone1 | Embryonic stem cell | Male |
| CVCL_A6H6 | SEES3-1V human SMAD7, clone2 | Embryonic stem cell | Male |
| CVCL_A6H7 | SEES3-1V human SMAD7, clone3 | Embryonic stem cell | Male |
| CVCL_B2GK | Abcam HeLa SMAD7 KO | Cancer cell line | Female |
| CVCL_B8PM | Abcam HCT 116 SMAD7 KO | Cancer cell line | Male |
| CVCL_B9S2 | Abcam A-549 SMAD7 KO | Cancer cell line | Male |
| CVCL_D8AU | Ubigene A-549 SMAD7 KO | Cancer cell line | Male |
| CVCL_D8VL | Ubigene HCT 116 SMAD7 KO | Cancer cell line | Male |
| CVCL_D9SB | Ubigene HEK293 SMAD7 KO | Transformed cell line | Female |
| CVCL_E0PD | Ubigene HeLa SMAD7 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00115375 | PHASE2 | COMPLETED | Platelet Aggregation Inhibition in Children on Clopidogrel (PICOLO) |
| NCT00350220 | PHASE2 | COMPLETED | Transfusion Strategies in Pediatric Cardiothoracic Surgery |
| NCT00374088 | PHASE2 | COMPLETED | N-Acetylcysteine in Neonatal Congenital Heart Surgery (INACT Study) |
| NCT00538785 | PHASE2 | COMPLETED | A Study to Evaluate MEDI-524 In Children With Hemodynamically Significant Congenital Heart Disease |
| NCT00770705 | PHASE2 | WITHDRAWN | Parenteral Phenoxybenzamine During Congenital Heart Disease Surgery |
| NCT00919945 | PHASE2 | TERMINATED | Impact of Early Enteral Feeding on Splanchnic Blood Flow After Surgery for Critical Heart Disease in the Newborn |
| NCT01063712 | PHASE2 | COMPLETED | Safety and Effectiveness of the Device Nit-Occlud® PDA-R |
| NCT01069510 | PHASE2 | COMPLETED | Spironolactone in Adult Congenital Heart Disease |
| NCT01189981 | PHASE2 | COMPLETED | Effect of eHealth Encouragements to Intensive Exercise in Adolescents With Congenital Heart Disease |
| NCT01330433 | PHASE2 | COMPLETED | Effects of CoSeal on Bleeding & Adhesions in Pediatric Heart Surgery |
| NCT01662037 | PHASE2 | COMPLETED | Bosentan Therapy in Children With Functional Single Ventricle |
| NCT01668264 | PHASE2 | UNKNOWN | Imaging Assessment of Diastolic Function |
| NCT01827059 | PHASE2 | UNKNOWN | Bosentan In Exercise Induced Pulmonary Arterial Hypertension in CongenitaL Heart diseasE |
Related Atlas pages
- Associated diseases: congenital heart disease, colorectal cancer, susceptibility to, 3
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colorectal cancer, susceptibility to, 3, congenital heart disease