SMARCA2-AS1

Summary

SMARCA2-AS1 (SMARCA2 antisense RNA 1, HGNC:56062) is a long non-coding RNA gene on chromosome 9p24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56062
Approved symbol	SMARCA2-AS1
Name	SMARCA2 antisense RNA 1
Location	9p24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236199
Ensembl biotype	lncRNA
Entrez	123706518
RNAcentral	URS000006CF92 — lncRNA, 420 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000426860

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426860 — 2 exons

Exon	Start	End
ENSE00001667185	2045835	2046023
ENSE00001750675	2041900	2042130

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 84.13.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.13	gold quality
sural nerve	UBERON:0015488	83.39	gold quality
cortical plate	UBERON:0005343	74.14	gold quality
skeletal muscle tissue	UBERON:0001134	71.64	gold quality
ventricular zone	UBERON:0003053	69.89	gold quality
leukocyte	CL:0000738	67.92	gold quality
placenta	UBERON:0001987	67.05	gold quality
liver	UBERON:0002107	66.69	gold quality
stromal cell of endometrium	CL:0002255	66.68	gold quality
vermiform appendix	UBERON:0001154	66.15	gold quality
adrenal tissue	UBERON:0018303	66.04	gold quality
muscle tissue	UBERON:0002385	65.92	gold quality
bone marrow	UBERON:0002371	65.62	gold quality
monocyte	CL:0000576	65.38	gold quality
uterine cervix	UBERON:0000002	64.79	gold quality
urinary bladder	UBERON:0001255	63.97	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.93	gold quality
ganglionic eminence	UBERON:0004023	62.65	gold quality
blood	UBERON:0000178	62.28	gold quality
islet of Langerhans	UBERON:0000006	61.15	gold quality
upper lobe of left lung	UBERON:0008952	60.97	gold quality
thoracic mammary gland	UBERON:0005200	60.43	gold quality
cortex of kidney	UBERON:0001225	60.27	gold quality
lung	UBERON:0002048	60.06	gold quality
calcaneal tendon	UBERON:0003701	58.98	gold quality
superior frontal gyrus	UBERON:0002661	58.72	gold quality
lymph node	UBERON:0000029	58.64	gold quality
right adrenal gland cortex	UBERON:0035827	58.59	gold quality
prefrontal cortex	UBERON:0000451	58.42	gold quality
right adrenal gland	UBERON:0001233	56.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.