SMARCA5-AS1

Summary

SMARCA5-AS1 (SMARCA5 antisense RNA 1, HGNC:39982) is a long non-coding RNA gene on chromosome 4q31.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39982
Approved symbol	SMARCA5-AS1
Name	SMARCA5 antisense RNA 1
Location	4q31.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000245112
Ensembl biotype	lncRNA
Entrez	100128055
RNAcentral	URS000075D091 — lncRNA, 1147 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000500800

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000500800 — 2 exons

Exon	Start	End
ENSE00004275310	143514445	143514635
ENSE00004275311	143513027	143514225

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 81.16.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.16	silver quality
sural nerve	UBERON:0015488	78.06	gold quality
stromal cell of endometrium	CL:0002255	77.36	gold quality
ventricular zone	UBERON:0003053	75.75	gold quality
ganglionic eminence	UBERON:0004023	74.92	gold quality
bone marrow cell	CL:0002092	73.13	silver quality
colonic epithelium	UBERON:0000397	71.66	gold quality
cortical plate	UBERON:0005343	71.57	gold quality
bone marrow	UBERON:0002371	70.06	gold quality
left adrenal gland	UBERON:0001234	69.18	gold quality
adrenal gland	UBERON:0002369	68.74	gold quality
right adrenal gland	UBERON:0001233	68.65	gold quality
islet of Langerhans	UBERON:0000006	68.29	gold quality
adrenal tissue	UBERON:0018303	68.20	gold quality
skeletal muscle tissue	UBERON:0001134	68.11	gold quality
left adrenal gland cortex	UBERON:0035825	67.87	gold quality
right adrenal gland cortex	UBERON:0035827	67.79	gold quality
prefrontal cortex	UBERON:0000451	67.70	gold quality
endometrium	UBERON:0001295	67.11	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.79	gold quality
popliteal artery	UBERON:0002250	66.73	gold quality
tibial artery	UBERON:0007610	66.70	gold quality
placenta	UBERON:0001987	66.65	gold quality
muscle of leg	UBERON:0001383	65.97	gold quality
gastrocnemius	UBERON:0001388	65.95	gold quality
urinary bladder	UBERON:0001255	65.92	gold quality
monocyte	CL:0000576	65.67	gold quality
leukocyte	CL:0000738	65.67	gold quality
mucosa of stomach	UBERON:0001199	65.50	gold quality
ovary	UBERON:0000992	65.43	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	5.05
E-ANND-3	no	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.