SMARCAD1-DT

Summary

SMARCAD1-DT (SMARCAD1 divergent transcript, HGNC:53364) is a long non-coding RNA gene on chromosome 4q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53364
Approved symbol	SMARCAD1-DT
Name	SMARCAD1 divergent transcript
Location	4q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246541
Ensembl biotype	lncRNA
Entrez	101929210
RNAcentral	URS00007E406E — lncRNA, 1042 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000501965

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000501965 — 9 exons

Exon	Start	End
ENSE00001960902	94162597	94162721
ENSE00001961178	94163898	94163929
ENSE00001969630	94124901	94125042
ENSE00001971559	94165848	94165925
ENSE00001974191	94117792	94118101
ENSE00001974936	94207530	94207556
ENSE00001981062	94165136	94165196
ENSE00001984321	94136024	94136159
ENSE00001987791	94118781	94118911

Expression profiles

Bgee: expression breadth broad, 17 present calls, max score 87.75.

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.75	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.70	silver quality
hindlimb stylopod muscle	UBERON:0004252	58.71	silver quality
monocyte	CL:0000576	57.67	gold quality
tibial artery	UBERON:0007610	56.60	gold quality
muscle of leg	UBERON:0001383	48.25	silver quality
tendon of biceps brachii	UBERON:0008188	48.09	gold quality
buccal mucosa cell	CL:0002336	46.99	silver quality
upper lobe of lung	UBERON:0008948	46.17	silver quality
lower lobe of lung	UBERON:0008949	45.89	silver quality
aorta	UBERON:0000947	45.48	silver quality
gastrocnemius	UBERON:0001388	45.48	silver quality
prefrontal cortex	UBERON:0000451	44.37	silver quality
skin of leg	UBERON:0001511	43.64	silver quality
islet of Langerhans	UBERON:0000006	43.49	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
oocyte	CL:0000023	43.17	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
lung	UBERON:0002048	41.97	gold quality
muscle tissue	UBERON:0002385	41.94	gold quality
heart left ventricle	UBERON:0002084	41.60	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
tendon	UBERON:0000043	41.40	gold quality
tonsil	UBERON:0002372	41.38	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
right atrium auricular region	UBERON:0006631	41.33	silver quality
oviduct epithelium	UBERON:0004804	41.25	gold quality
fallopian tube	UBERON:0003889	41.20	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.