SMARCAL1-AS1

Summary

SMARCAL1-AS1 (SMARCAL1 antisense RNA 1, HGNC:40555) is a long non-coding RNA gene on chromosome 2q35.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40555
Approved symbol	SMARCAL1-AS1
Name	SMARCAL1 antisense RNA 1
Location	2q35
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235042
Ensembl biotype	lncRNA
Entrez	107985985
RNAcentral	URS00004DFEEA — lncRNA, 666 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000457694, ENST00000804656, ENST00000804657

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000457694 — 5 exons

Exon	Start	End
ENSE00001674974	216396904	216397002
ENSE00001684956	216387503	216387623
ENSE00001760888	216386779	216386855
ENSE00001770384	216412425	216412696
ENSE00001782156	216385288	216385384

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 94.94.

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	94.94	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.84	gold quality
ventricular zone	UBERON:0003053	63.20	gold quality
ganglionic eminence	UBERON:0004023	60.61	gold quality
skeletal muscle tissue	UBERON:0001134	59.89	silver quality
leukocyte	CL:0000738	58.21	gold quality
monocyte	CL:0000576	57.62	gold quality
duodenum	UBERON:0002114	57.23	gold quality
islet of Langerhans	UBERON:0000006	56.92	gold quality
lymph node	UBERON:0000029	55.30	gold quality
prefrontal cortex	UBERON:0000451	53.68	gold quality
granulocyte	CL:0000094	53.56	gold quality
liver	UBERON:0002107	53.15	gold quality
right adrenal gland	UBERON:0001233	52.49	gold quality
cortex of kidney	UBERON:0001225	52.17	gold quality
adrenal gland	UBERON:0002369	52.14	gold quality
left adrenal gland	UBERON:0001234	51.86	gold quality
vermiform appendix	UBERON:0001154	51.66	gold quality
blood	UBERON:0000178	50.15	gold quality
frontal cortex	UBERON:0001870	50.13	gold quality
right adrenal gland cortex	UBERON:0035827	49.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.34	gold quality
placenta	UBERON:0001987	49.04	gold quality
primary visual cortex	UBERON:0002436	48.57	gold quality
superior frontal gyrus	UBERON:0002661	48.56	gold quality
muscle of leg	UBERON:0001383	48.25	gold quality
right lobe of liver	UBERON:0001114	48.21	silver quality
gastrocnemius	UBERON:0001388	47.42	silver quality
cerebellar cortex	UBERON:0002129	47.15	silver quality
cerebellum	UBERON:0002037	46.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.