SMIM29-AS1

Summary

SMIM29-AS1 (SMIM29 antisense RNA 1, HGNC:58176) is a long non-coding RNA gene on chromosome 6p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58176
Approved symbol	SMIM29-AS1
Name	SMIM29 antisense RNA 1
Location	6p21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225339
Ensembl biotype	lncRNA
Entrez	139281638
RNAcentral	URS0002A6E5CD — lncRNA, 3158 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 8 lncRNA, 1 retained_intron

ENST00000429998, ENST00000586413, ENST00000586726, ENST00000593917, ENST00000659015, ENST00000732777, ENST00000732778, ENST00000732779, ENST00000732780

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429998 — 1 exons

Exon	Start	End
ENSE00001748081	34279704	34286768

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 97.57.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
amygdala	UBERON:0001876	97.57	gold quality
temporal lobe	UBERON:0001871	97.48	gold quality
cortical plate	UBERON:0005343	97.45	gold quality
primary visual cortex	UBERON:0002436	97.35	gold quality
putamen	UBERON:0001874	97.32	gold quality
right frontal lobe	UBERON:0002810	97.12	gold quality
caudate nucleus	UBERON:0001873	97.10	gold quality
nucleus accumbens	UBERON:0001882	97.02	gold quality
superior frontal gyrus	UBERON:0002661	96.91	gold quality
anterior cingulate cortex	UBERON:0009835	96.88	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	96.86	gold quality
Brodmann (1909) area 9	UBERON:0013540	96.64	gold quality
hypothalamus	UBERON:0001898	96.55	gold quality
Ammon’s horn	UBERON:0001954	96.49	gold quality
cerebral cortex	UBERON:0000956	96.32	gold quality
substantia nigra	UBERON:0002038	96.13	gold quality
frontal cortex	UBERON:0001870	95.92	gold quality
cerebellar cortex	UBERON:0002129	95.79	gold quality
right hemisphere of cerebellum	UBERON:0014890	95.78	gold quality
cerebellar hemisphere	UBERON:0002245	95.77	gold quality
cerebellum	UBERON:0002037	95.73	gold quality
brain	UBERON:0000955	95.40	gold quality
prefrontal cortex	UBERON:0000451	95.14	gold quality
ganglionic eminence	UBERON:0004023	93.69	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	93.25	gold quality
tibial nerve	UBERON:0001323	92.95	gold quality
apex of heart	UBERON:0002098	92.74	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.32	gold quality
hindlimb stylopod muscle	UBERON:0004252	91.02	gold quality
left lobe of thyroid gland	UBERON:0001120	89.55	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	9754.29
E-ANND-3	yes	4.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.