SMIM41-AS1

Summary

SMIM41-AS1 (SMIM41 antisense RNA 1, HGNC:58285) is a long non-coding RNA gene on chromosome 12q13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58285
Approved symbol	SMIM41-AS1
Name	SMIM41 antisense RNA 1
Location	12q13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257989
Ensembl biotype	lncRNA
Entrez	112268096
RNAcentral	URS00007D960E — lncRNA, 512 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000547538

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547538 — 3 exons

Exon	Start	End
ENSE00002351133	52104159	52104297
ENSE00002375461	52092485	52092683
ENSE00002377728	52094679	52094852

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 93.09.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.09	gold quality
cerebellar vermis	UBERON:0004720	87.47	gold quality
prostate gland	UBERON:0002367	82.99	gold quality
thymus	UBERON:0002370	81.29	silver quality
bone marrow	UBERON:0002371	78.93	silver quality
cortex of kidney	UBERON:0001225	77.24	gold quality
endometrium	UBERON:0001295	75.11	gold quality
metanephros cortex	UBERON:0010533	74.47	gold quality
kidney	UBERON:0002113	73.05	gold quality
adult mammalian kidney	UBERON:0000082	72.44	gold quality
ventricular zone	UBERON:0003053	66.90	gold quality
skeletal muscle tissue	UBERON:0001134	64.30	gold quality
right lobe of thyroid gland	UBERON:0001119	63.20	gold quality
left lobe of thyroid gland	UBERON:0001120	62.69	gold quality
thyroid gland	UBERON:0002046	62.05	gold quality
liver	UBERON:0002107	61.33	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.86	gold quality
right lobe of liver	UBERON:0001114	59.63	gold quality
body of uterus	UBERON:0009853	59.30	gold quality
ganglionic eminence	UBERON:0004023	59.21	gold quality
monocyte	CL:0000576	58.51	gold quality
lower esophagus mucosa	UBERON:0035834	58.23	gold quality
skin of abdomen	UBERON:0001416	58.09	gold quality
zone of skin	UBERON:0000014	57.18	gold quality
skin of leg	UBERON:0001511	56.16	gold quality
frontal cortex	UBERON:0001870	55.81	gold quality
lymph node	UBERON:0000029	55.01	gold quality
islet of Langerhans	UBERON:0000006	54.59	gold quality
prefrontal cortex	UBERON:0000451	54.43	gold quality
placenta	UBERON:0001987	54.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.