SNAP25
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Also known as SNAP-25RIC-4RIC4SEC9bA416N4.2dJ1068F16.2
Summary
SNAP25 (synaptosome associated protein 25, HGNC:11132) is a protein-coding gene on chromosome 20p12.2, encoding Synaptosomal-associated protein 25 (P60880). t-SNARE involved in the molecular regulation of neurotransmitter release.
Synaptic vesicle membrane docking and fusion is mediated by SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptors) located on the vesicle membrane (v-SNAREs) and the target membrane (t-SNAREs). The assembled v-SNARE/t-SNARE complex consists of a bundle of four helices, one of which is supplied by v-SNARE and the other three by t-SNARE. For t-SNAREs on the plasma membrane, the protein syntaxin supplies one helix and the protein encoded by this gene contributes the other two. Therefore, this gene product is a presynaptic plasma membrane protein involved in the regulation of neurotransmitter release. Two alternative transcript variants encoding different protein isoforms have been described for this gene.
Source: NCBI Gene 6616 — RefSeq curated summary.
At a glance
- Gene–disease (curated): genetic developmental and epileptic encephalopathy (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 260 total — 3 pathogenic, 20 likely-pathogenic
- Phenotypes (HPO): 77
- Druggable target: yes
- MANE Select transcript:
NM_130811
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11132 |
| Approved symbol | SNAP25 |
| Name | synaptosome associated protein 25 |
| Location | 20p12.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SNAP-25, RIC-4, RIC4, SEC9, bA416N4.2, dJ1068F16.2 |
| Ensembl gene | ENSG00000132639 |
| Ensembl biotype | protein_coding |
| OMIM | 600322 |
| Entrez | 6616 |
Gene structure
Transcript identifiers
Ensembl transcripts: 52 — 43 protein_coding, 6 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000254976, ENST00000304886, ENST00000430336, ENST00000492814, ENST00000495883, ENST00000685131, ENST00000687785, ENST00000689077, ENST00000689248, ENST00000689723, ENST00000689757, ENST00000689858, ENST00000690099, ENST00000690766, ENST00000690812, ENST00000691161, ENST00000691353, ENST00000691665, ENST00000692411, ENST00000692697, ENST00000693325, ENST00000693732, ENST00000706269, ENST00000856447, ENST00000856448, ENST00000856449, ENST00000856450, ENST00000856451, ENST00000856452, ENST00000856453, ENST00000856454, ENST00000856455, ENST00000856456, ENST00000961769, ENST00000961770, ENST00000961771, ENST00000961772, ENST00000961773, ENST00000961774, ENST00000961775, ENST00000961776, ENST00000961777, ENST00000961778, ENST00000961779, ENST00000961780, ENST00000961781, ENST00000961782, ENST00000961783, ENST00000961784, ENST00000961785, ENST00000961786, ENST00000961787
RefSeq mRNA: 13 — MANE Select: NM_130811
NM_001322902, NM_001322903, NM_001322904, NM_001322905, NM_001322906, NM_001322907, NM_001322908, NM_001322909, NM_001322910, NM_001424415, NM_001424416, NM_003081, NM_130811
CCDS: CCDS13109, CCDS13110
Canonical transcript exons
ENST00000254976 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000906745 | 10284724 | 10284772 |
| ENSE00000906747 | 10296925 | 10297050 |
| ENSE00001017161 | 10277685 | 10277726 |
| ENSE00001206321 | 10218830 | 10218977 |
| ENSE00001229068 | 10275429 | 10275563 |
| ENSE00003460458 | 10299268 | 10299412 |
| ENSE00003785335 | 10293161 | 10293278 |
| ENSE00003903928 | 10306129 | 10307418 |
Expression profiles
Bgee: expression breadth ubiquitous, 220 present calls, max score 99.94.
FANTOM5 (CAGE): breadth broad, TPM avg 96.0964 / max 16377.4739, expressed in 730 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 183517 | 44.9392 | 640 |
| 183519 | 30.1521 | 382 |
| 183518 | 18.9099 | 438 |
| 183522 | 0.5377 | 118 |
| 183521 | 0.5335 | 123 |
| 183523 | 0.4924 | 95 |
| 208990 | 0.4192 | 120 |
| 183525 | 0.0737 | 30 |
| 183524 | 0.0387 | 23 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pons | UBERON:0000988 | 99.94 | gold quality |
| cerebellar cortex | UBERON:0002129 | 99.94 | gold quality |
| cerebellum | UBERON:0002037 | 99.93 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 99.93 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 99.92 | gold quality |
| cerebellar vermis | UBERON:0004720 | 99.92 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 99.92 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 99.90 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 99.90 | gold quality |
| primary visual cortex | UBERON:0002436 | 99.89 | gold quality |
| occipital lobe | UBERON:0002021 | 99.88 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 99.88 | gold quality |
| parietal lobe | UBERON:0001872 | 99.87 | gold quality |
| postcentral gyrus | UBERON:0002581 | 99.87 | gold quality |
| prefrontal cortex | UBERON:0000451 | 99.84 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.84 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 99.84 | gold quality |
| frontal cortex | UBERON:0001870 | 99.83 | gold quality |
| frontal lobe | UBERON:0016525 | 99.83 | gold quality |
| endothelial cell | CL:0000115 | 99.82 | gold quality |
| frontal pole | UBERON:0002795 | 99.81 | gold quality |
| paraflocculus | UBERON:0005351 | 99.81 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 99.81 | gold quality |
| right frontal lobe | UBERON:0002810 | 99.79 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 99.79 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 99.73 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 99.70 | gold quality |
| Ammon’s horn | UBERON:0001954 | 99.66 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 99.65 | gold quality |
| amygdala | UBERON:0001876 | 99.63 | gold quality |
Single-cell (SCXA)
Detected in 20 experiment(s), a significant marker in 16.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 6701.41 |
| E-MTAB-7316 | yes | 6467.70 |
| E-HCAD-30 | yes | 4809.83 |
| E-HCAD-35 | yes | 4232.46 |
| E-GEOD-180759 | yes | 3863.15 |
| E-GEOD-84465 | yes | 2087.62 |
| E-GEOD-93593 | yes | 1278.46 |
| E-HCAD-5 | yes | 759.77 |
| E-GEOD-111727 | yes | 351.26 |
| E-GEOD-130473 | yes | 272.23 |
| E-MTAB-7008 | yes | 34.07 |
| E-GEOD-81547 | yes | 24.19 |
| E-GEOD-137537 | yes | 20.73 |
| E-HCAD-10 | yes | 5.88 |
| E-GEOD-125970 | yes | 5.30 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, EWSR1, FLI1, HNF4A, JUN, LEF1, OPTN, PGR, POU2F2, POU4F1, POU4F2, REST, SP1, STAT6, TBP
miRNA regulators (miRDB)
133 targeting SNAP25, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-1-3P | 99.93 | 72.35 | 1914 |
| HSA-MIR-206 | 99.93 | 72.50 | 1893 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-613 | 99.91 | 71.50 | 1710 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
Literature-anchored findings (GeneRIF, showing 40)
- Identified a novel microsatellite repeat in SNAP-25 and case-control analyses suggest there may be a role of this polymorphism in ADHD. (PMID:11920846)
- SNAP-25 traffics to the plasma membrane by a syntaxin-independent mechanism. (PMID:12114505)
- This protein modulates Kv2.1 voltage-dependent K(+) channels in neuroendocrine islet beta-cells through an interaction with the channel N terminus. (PMID:12403834)
- Synaptosome-associated protein of 25 kDa (SNAP25) has been identified as a new kinesin heavy chain (uKHC)-interacting protein. (PMID:12475239)
- elevated mRNA levels of SNAP-25 in adult Down Syndrome brain. (PMID:12499044)
- trend consistent with biased transmission of the TC haplotype of SNAP-25 in all transmissions and detected a significant distortion (P=0.027) when paternal transmissions were evaluated for attention deficit disorder with hyperactivity (PMID:12660803)
- In the hippocampus, the level of SNAP-25 protein is significantly less in the schizophrenic group compared to control or bipolar groups. (PMID:12691775)
- SNAP-25 in cerebrospinal fluid is elevated in schizophrenia suggesting that synaptic pathology may be linked with the pathophysiology of schizophrenia. (PMID:12814864)
- the syntaxin/SNAP-25 dimer binding to synaptotagmins I and II is mediated by an evolutionarily conserved motif (PMID:14709554)
- Association of SNAP-25 with ADHD is largely due to transmission of alleles from paternal chromosomes. (PMID:15007392)
- SNAP-25 is required for the activation and maintenance of store-mediated calcium entry in platelets (PMID:15121806)
- first structure of a CNT endopeptidase in complex with its target SNARE at a resolution of 2.1 A: botulinum neurotoxin serotype A (BoNT/A) protease bound to human SNAP-25 (PMID:15592454)
- However, effects of diazoxide on SNAP-25 protein were nullified by proteasome inhibitors (ALLN, MG-132, and epoxomicin) but not by lysosomal inhibition (NH(4)Cl). (PMID:15752769)
- Quantitative analysis of the dimensions of hyperactivity/impulsivity and inattention in the Toronto sample found that both behavioral traits were associated with SNAP25. (PMID:16088329)
- Variation in single-nucleotide polymorphism is associated with cognitive ability in a Dutch twin study. (PMID:16801949)
- The fact that this protein undergoes Ca2+-induced conformational changes and interacts with SNAP-25 raise the possibility that secretagogin may link Ca2+ signalling to exocytotic processes. (PMID:16939418)
- This study provides significant evidence for assoiatetion single nucleude polymorphism in Korean Attention Deficit Hyperactivity Disorder. (PMID:17325713)
- evidence supporting the association of previously implicated SNPs (rs3746544, rs1051312) of SNAP-25 to ADHD. Co-morbidity with major depressive disorder may enhance detection of the association between SNAP-25 and ADHD. (PMID:17455213)
- We report a loss of the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) protein, synaptosome-associated protein 25 (SNAP 25) in HD brains of grades I-IV. (PMID:17877635)
- Two new variants in intron 1 show association with variation in IQ phenotypes in Dutch twins. (PMID:17908175)
- The heterogeneous distribution of SNAP-25 may have important implications not only in relation to the function of the protein as a SNARE (PMID:18041776)
- In this German ADHD sample no preferential transmission of either variant could be observed. (PMID:18250960)
- The expression of the SNARE protein SNAP-25 and its cellular homologue SNAP-23, as well as syntaxin1 and VAMP (vesicle-associated membrane protein) in samples of normal parathyroid tissue, chief cell adenoma, and parathyroid carcinoma, was examined. (PMID:18457912)
- SNARE complex-related genes STX1A, VAMP2 and SNAP25 do not play a major role in susceptibility to schizophrenia in the Japanese population (PMID:18512733)
- structural and functional implications of linked SNARE motifs in SNAP25 (PMID:18596234)
- Results suggest that SNAP-25 is up-regulated and implicated in neuritogenesis in human neuroblastoma SH-SY5Y cells treated with the neuropeptide VIP. (PMID:18617262)
- Expressed in prolactin-producing pituitary adenomas; may play an important role in prolactin release. (PMID:18633321)
- SNAP-25 substrate peptide (residues 180-183) binds to but bypasses cleavage by catalytically active Clostridium botulinum neurotoxin E (PMID:18658150)
- SNAP-25 genotype may modulate synaptic plasticity and neurogenesis in the left hippocampus (PMID:18726138)
- Direct interaction of otoferlin with syntaxin 1A, SNAP-25, and the L-type voltage-gated calcium channel Cav1.3. (PMID:19004828)
- No association was found between SNAP-25 polymorphisms and ADHD. (PMID:19099826)
- These results show that variations in SNAP25, associated with an increased gene expression level in prefrontal cortex, might predispose to early-onset BD. (PMID:19125158)
- Genetic variation at SNAP25 may be differentially associated with both schizophrenia and attention deficit hyperactivity disorder. (PMID:19132710)
- MnlI SNAP-25 polymorphism effect on the variability of neurocognitive traits in all groups suggests the relationship between this gene and general cognitive ability. (PMID:19156089)
- The T1065G polymorphism in the SNAP-25 may be associated with ADHD. (PMID:19695183)
- hypothesize that these differences are the result of a mechanism involving SNAP-25 polymorphisms and its differential expression in specific brain areas (PMID:19713048)
- Data identified three membrane-associated proteins, synaptosomal associated protein 25 (SNAP25), Thy-1 cell surface antigen and zonadhesin, interact with sex hormone binding globulin (SHBG)-ing proteins in the brain. (PMID:19724880)
- SNAP25 is associated with schizophrenia in Irish family and case-control samples (PMID:19806613)
- This article confirms and expands previous studies suggesting that genes moderate ADHD treatment response. The ADHD outcomes are not unitary but reflect both behavioral and learning domains that are likely influenced by different genes. (PMID:19858760)
- This indicates that kinesin-1 facilitates the transport of SNAP-25 containing vesicles as a prerequisite to SNAP-25 driven membrane fusion events. (PMID:19913510)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | snap25a | ENSDARG00000020609 |
| danio_rerio | snap25b | ENSDARG00000058117 |
| mus_musculus | Snap25 | ENSMUSG00000027273 |
| rattus_norvegicus | Snap25 | ENSRNOG00000006037 |
| drosophila_melanogaster | Snap25 | FBGN0011288 |
| drosophila_melanogaster | Snap24 | FBGN0266720 |
| caenorhabditis_elegans | WBGENE00004364 |
Paralogs (3): SNAP23 (ENSG00000092531), SNAP29 (ENSG00000099940), SNAP47 (ENSG00000143740)
Protein
Protein identifiers
Synaptosomal-associated protein 25 — P60880 (reviewed: P60880)
Alternative names: Super protein, Synaptosomal-associated 25 kDa protein
All UniProt accessions (2): P60880, A0A0A0MSS0
UniProt curated annotations — full annotation on UniProt →
Function. t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion. Regulates plasma membrane recycling through its interaction with CENPF. Modulates the gating characteristics of the delayed rectifier voltage-dependent potassium channel KCNB1 in pancreatic beta cells.
Subunit / interactions. Part of the SNARE core complex containing SNAP25, VAMP2 and STX1A; this complex constitutes the basic catalytic machinery of the complex neurotransmitter release apparatus. Recruited to the SNARE complex following binding of the SNARE complex component STX1A to STXBP1. This complex binds CPLX1. Found in a complex containing SYT1, SV2B and syntaxin-1. Found in a ternary complex with STX1A and VAMP8. Interacts with HSC70 and with SYT9, forming a complex with DNAJC5. The interaction with SYT9 is inhibited in presence of calcium. Isoform 1 and isoform 2 interact with BLOC1S6. Interacts with CENPF. Interacts with EQTN. Interacts with HGS. Interacts with KCNB1 (via N-terminus); reduces the voltage-dependent potassium channel KCNB1 activity in pancreatic beta cells. Interacts with OTOF. Interacts with RIMS1. Interacts with SNAPIN. Interacts with STXBP6. Interacts with TRIM9. Interacts with ZDHHC13 (via ANK repeats). Interacts with ZDHHC17 (via ANK repeats). Associates with the BLOC-1 complex. Interacts with PLCL1 (via C2 domain). Interacts with PRRT2; this interaction may impair the formation of the SNARE complex. Interacts with alpha-synuclein/SNCA. Interacts with PRPH2. Interacts with ROM1. Interacts with STX3.
Subcellular location. Cytoplasm. Perinuclear region. Cell membrane. Synapse. Synaptosome. Photoreceptor inner segment.
Tissue specificity. Neurons of the neocortex, hippocampus, piriform cortex, anterior thalamic nuclei, pontine nuclei, and granule cells of the cerebellum.
Post-translational modifications. Palmitoylated. Cys-85 appears to be the main site, and palmitoylation is required for membrane association. (Microbial infection) Targeted and hydrolyzed by C.botulinum neurotoxin type A (BoNT/A, botA) which hydrolyzes the 197-Gln-|-Arg-198 bond and inhibits neurotransmitter release. (Microbial infection) Targeted and hydrolyzed by C.botulinum neurotoxin type C (BoNT/C) which hydrolyzes the 198-Arg-|-Ala-199 bond and inhibits neurotransmitter release. C.botulinum type C only rarely infects humans. (Microbial infection) Targeted and hydrolyzed by C.botulinum neurotoxin type E (BoNT/E) which hydrolyzes the 180-Arg-|-Ile-181 bond and inhibits neurotransmitter release.
Disease relevance. Developmental and epileptic encephalopathy 117 (DEE117) [MIM:616330] A form of epileptic encephalopathy, a heterogeneous group of early-onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. DEE117 is an autosomal dominant form characterized by global developmental delay, delayed walking or inability to walk, intellectual disability, and early-onset seizures. Variable neurological symptoms are muscular hypotonia, movement disorders (ataxia, dystonia or tremor), cerebral visual impairment, and brain volume loss. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. When cloned and expressed in E.coli, where protein palmitoylation does not occur, Cys-85, Cys-88, Cys-90 and Cys-92 in the protein sequence readily form an iron-sulfur cluster.
Similarity. Belongs to the SNAP-25 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P60880-1 | 1, SNAP-25b | yes |
| P60880-2 | 2, SNAP-25a |
RefSeq proteins (13): NP_001309831, NP_001309832, NP_001309833, NP_001309834, NP_001309835, NP_001309836, NP_001309837, NP_001309838, NP_001309839, NP_001411344, NP_001411345, NP_003072, NP_570824* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000727 | T_SNARE_dom | Domain |
| IPR000928 | SNAP-25_dom | Domain |
| IPR039077 | SNAP-25_N_SNARE_chord | Domain |
Pfam: PF00835
UniProt features (35 total): mutagenesis site 12, lipid moiety-binding region 4, modified residue 3, region of interest 3, site 3, domain 2, helix 2, chain 1, splice variant 1, sequence variant 1, sequence conflict 1, strand 1, compositionally biased region 1
Structure
Experimental structures (PDB)
14 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3DDA | X-RAY DIFFRACTION | 1.5 |
| 3DDB | X-RAY DIFFRACTION | 1.6 |
| 1XTG | X-RAY DIFFRACTION | 2.1 |
| 5W7I | X-RAY DIFFRACTION | 2.1 |
| 3RK2 | X-RAY DIFFRACTION | 2.2 |
| 5W7J | X-RAY DIFFRACTION | 2.2 |
| 1KIL | X-RAY DIFFRACTION | 2.3 |
| 8BAV | X-RAY DIFFRACTION | 2.3 |
| 8BAN | X-RAY DIFFRACTION | 2.35 |
| 6JLH | X-RAY DIFFRACTION | 2.37 |
| 3ZUR | X-RAY DIFFRACTION | 2.71 |
| 3RK3 | X-RAY DIFFRACTION | 3.5 |
| 3RL0 | X-RAY DIFFRACTION | 3.8 |
| 2N1T | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P60880-F1 | 84.14 | 0.59 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 180–181 ((microbial infection) cleavage; by c.botulinum neurotoxin type e (bont/e)); 197–198 ((microbial infection) cleavage; by c.botulinum neurotoxin type a (bont/a, bota)); 198–199 ((microbial infection) cleavage; by c.botulinum neurotoxin type c (bont/c))
Post-translational modifications (7): 138, 154, 187, 85, 88, 90, 92
Mutagenesis-validated functional residues (12):
| Position | Phenotype |
|---|---|
| 112 | mildly decreased binding affinity for zdhhc17. |
| 113 | mildly decreased binding affinity for zdhhc17. |
| 115 | no effect on zdhhc17 binding. |
| 116 | decreased binding affinity for zdhhc17. |
| 117 | decreased binding affinity for zdhhc17. |
| 119 | no effect on zdhhc17 binding. |
| 152 | decreased cleavage by c.botulinum bont/c, no change in cleavage by c.botulinum bont/a (bota). |
| 156 | small decrease in affinity for c.botulinum bont/a, increased efficiency of bont/c cleavage. |
| 166 | decreased cleavage by bont/c, no change in cleavage by bont/a. |
| 167 | small decrease in affinity for c.botulinum bont/a. |
| 199 | not cleaved by bont/c. |
| 202 | slight decrease in affinity for bont/a, increases kcat for bont/a. |
Function
Pathways and Gene Ontology
Reactome pathways
29 pathways
| ID | Pathway |
|---|---|
| R-HSA-181429 | Serotonin Neurotransmitter Release Cycle |
| R-HSA-181430 | Norepinephrine Neurotransmitter Release Cycle |
| R-HSA-210500 | Glutamate Neurotransmitter Release Cycle |
| R-HSA-212676 | Dopamine Neurotransmitter Release Cycle |
| R-HSA-264642 | Acetylcholine Neurotransmitter Release Cycle |
| R-HSA-422356 | Regulation of insulin secretion |
| R-HSA-449836 | Other interleukin signaling |
| R-HSA-5250968 | Toxicity of botulinum toxin type A (botA) |
| R-HSA-5250971 | Toxicity of botulinum toxin type C (botC) |
| R-HSA-5250992 | Toxicity of botulinum toxin type E (botE) |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-888590 | GABA synthesis, release, reuptake and degradation |
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-112310 | Neurotransmitter release cycle |
| R-HSA-112315 | Transmission across Chemical Synapses |
| R-HSA-112316 | Neuronal System |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1430728 | Metabolism |
| R-HSA-163685 | Integration of energy metabolism |
| R-HSA-1643685 | Disease |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-168799 | Neurotoxicity of clostridium toxins |
| R-HSA-449147 | Signaling by Interleukins |
| R-HSA-5339562 | Uptake and actions of bacterial toxins |
| R-HSA-5663205 | Infectious disease |
| R-HSA-9659379 | Sensory processing of sound |
| R-HSA-9709957 | Sensory Perception |
| R-HSA-9824439 | Bacterial Infection Pathways |
MSigDB gene sets: 603 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_UP, GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_DN, ATF_B, GOBP_POTASSIUM_ION_TRANSPORT, MODULE_92, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_COGNITION, MODULE_274, GOBP_BEHAVIOR, GOBP_VESICLE_LOCALIZATION, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_NEUROTRANSMITTER_UPTAKE, GOCC_SECRETORY_GRANULE, GOBP_VESICLE_ORGANIZATION
GO Biological Process (16): neurotransmitter uptake (GO:0001504), exocytosis (GO:0006887), chemical synaptic transmission (GO:0007268), locomotory behavior (GO:0007626), associative learning (GO:0008306), regulation of neuron projection development (GO:0010975), synaptic vesicle exocytosis (GO:0016079), obsolete synaptic vesicle docking (GO:0016081), synaptic vesicle priming (GO:0016082), synaptic vesicle fusion to presynaptic active zone membrane (GO:0031629), regulation of insulin secretion (GO:0050796), long-term synaptic potentiation (GO:0060291), presynaptic dense core vesicle exocytosis (GO:0099525), neurotransmitter secretion (GO:0007269), regulation of establishment of protein localization (GO:0070201), potassium ion transmembrane transport (GO:0071805)
GO Molecular Function (7): voltage-gated potassium channel activity (GO:0005249), SNAP receptor activity (GO:0005484), lipid binding (GO:0008289), syntaxin-1 binding (GO:0017075), calcium-dependent protein binding (GO:0048306), SNARE binding (GO:0000149), protein binding (GO:0005515)
GO Cellular Component (25): photoreceptor inner segment (GO:0001917), cytoplasm (GO:0005737), trans-Golgi network (GO:0005802), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), cell cortex (GO:0005938), synaptic vesicle (GO:0008021), membrane (GO:0016020), growth cone (GO:0030426), SNARE complex (GO:0031201), specific granule membrane (GO:0035579), somatodendritic compartment (GO:0036477), presynaptic membrane (GO:0042734), neuron projection (GO:0043005), perinuclear region of cytoplasm (GO:0048471), synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex (GO:0070032), tertiary granule membrane (GO:0070821), ribbon synapse (GO:0097470), glutamatergic synapse (GO:0098978), voltage-gated potassium channel complex (GO:0008076), axon (GO:0030424), BLOC-1 complex (GO:0031083), vesicle (GO:0031982), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Neurotransmitter release cycle | 6 |
| Neurotoxicity of clostridium toxins | 3 |
| Integration of energy metabolism | 1 |
| Signaling by Interleukins | 1 |
| Innate Immune System | 1 |
| Sensory processing of sound | 1 |
| Transmission across Chemical Synapses | 1 |
| Neuronal System | 1 |
| Immune System | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| presynapse | 4 |
| cytoplasm | 4 |
| neurotransmitter transport | 2 |
| vesicle fusion to plasma membrane | 2 |
| establishment of localization in cell | 2 |
| signal release from synapse | 2 |
| synaptic vesicle exocytosis | 2 |
| binding | 2 |
| protein binding | 2 |
| cell periphery | 2 |
| secretory granule membrane | 2 |
| synapse | 2 |
| import into cell | 1 |
| vesicle-mediated transport | 1 |
| secretion by cell | 1 |
| anterograde trans-synaptic signaling | 1 |
| behavior | 1 |
| learning | 1 |
| neuron projection development | 1 |
| regulation of plasma membrane bounded cell projection organization | 1 |
| neurotransmitter secretion | 1 |
| regulated exocytosis | 1 |
| vesicle-mediated transport in synapse | 1 |
| synaptic vesicle cycle | 1 |
| protein-containing complex assembly | 1 |
| exocytic process | 1 |
| synaptic vesicle membrane organization | 1 |
| insulin secretion | 1 |
| regulation of protein secretion | 1 |
| regulation of peptide hormone secretion | 1 |
| regulation of synaptic plasticity | 1 |
| positive regulation of synaptic transmission | 1 |
| calcium ion-regulated exocytosis of neurotransmitter | 1 |
| neuronal dense core vesicle exocytosis | 1 |
| chemical synaptic transmission | 1 |
| regulation of protein localization | 1 |
| establishment of protein localization | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
61 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| STX11 | SNAP23 | psi-mi:“MI:0914”(association) | 0.900 |
| SNAP25 | STX11 | psi-mi:“MI:0915”(physical association) | 0.670 |
| STX12 | SNAP23 | psi-mi:“MI:0914”(association) | 0.640 |
| Cplx1 | Stx1a | psi-mi:“MI:0915”(physical association) | 0.560 |
| rep | SNAP25 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EGFR | SNAP25 | psi-mi:“MI:0915”(physical association) | 0.550 |
| SNAP25 | EGFR | psi-mi:“MI:0915”(physical association) | 0.550 |
| SNAP25 | STXBP1 | psi-mi:“MI:0914”(association) | 0.530 |
| NUFIP1 | PDE2A | psi-mi:“MI:0914”(association) | 0.530 |
| STX3 | NBAS | psi-mi:“MI:0914”(association) | 0.530 |
| SNAP25 | ARF1 | psi-mi:“MI:0914”(association) | 0.510 |
| ARF1 | SNAP25 | psi-mi:“MI:0914”(association) | 0.510 |
| SNAP25 | ARF1 | psi-mi:“MI:0403”(colocalization) | 0.510 |
| ITSN1 | SNAP25 | psi-mi:“MI:0403”(colocalization) | 0.500 |
| WASHC3 | SNAP25 | psi-mi:“MI:0915”(physical association) | 0.490 |
| ZDHHC17 | SNAP25 | psi-mi:“MI:0216”(palmitoylation reaction) | 0.490 |
| SNAP25 | ZDHHC17 | psi-mi:“MI:0403”(colocalization) | 0.490 |
| SNAP25 | botE | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SNAP25 | Stx1a | psi-mi:“MI:0915”(physical association) | 0.400 |
| SNAP25 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| SNAP25 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| SNAP25 | SNAPIN | psi-mi:“MI:0914”(association) | 0.350 |
| VAMP5 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (102): SNAP25 (Affinity Capture-MS), SNAP25 (Affinity Capture-MS), SNAP25 (Affinity Capture-MS), STX11 (Two-hybrid), SNAP25 (Co-fractionation), STXBP1 (Co-fractionation), SNAP25 (Proximity Label-MS), SNAP25 (Affinity Capture-MS), SNAP25 (Affinity Capture-MS), SNAP25 (Affinity Capture-MS), SNAP25 (Biochemical Activity), SNAP25 (Reconstituted Complex), SNAP25 (Affinity Capture-Western), SNAP25 (Affinity Capture-MS), PRRT2 (Two-hybrid)
ESM2 similar proteins: O00161, O09044, O15400, O60499, O64791, O70257, O70377, O70439, O88384, O95721, P31109, P33328, P36975, P36976, P36977, P36978, P58200, P60877, P60878, P60879, P60880, P60881, Q0E1I7, Q0II86, Q17QQ3, Q2KIU0, Q3ZBT5, Q5NVG5, Q5R1X1, Q5R5K4, Q5R602, Q5TZ66, Q6PC54, Q8VZU2, Q92356, Q944A9, Q946Y7, Q94KK7, Q9ERB0, Q9LMG8
Diamond homologs: O00161, O09044, O70377, P36975, P36976, P36977, P36978, P60877, P60878, P60879, P60880, P60881, Q17QQ3, Q5NVG5, Q5R1X1, Q5TZ66, Q6PC54, P55820, O74786, Q6CSD1, Q752V4, Q9SD96, P83351, Q9Z2P6, Q9S7P9, Q0E1I7, Q9LMG8
SIGNOR signaling
11 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PRKCA | up-regulates | SNAP25 | phosphorylation |
| PRKCA | unknown | SNAP25 | phosphorylation |
| SNAPIN | “up-regulates activity” | SNAP25 | binding |
| SNAP25 | “form complex” | SNARE_complex | binding |
| NSF | “down-regulates activity” | SNAP25 | binding |
| SYT1 | “up-regulates activity” | SNAP25 | binding |
| CADPS | “up-regulates activity” | SNAP25 | binding |
| CADPS2 | “up-regulates activity” | SNAP25 | binding |
| OPTN | “up-regulates quantity by expression” | SNAP25 | “transcriptional regulation” |
| PRKACA | unknown | SNAP25 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 47 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Membrane Trafficking | 7 | 8.7× | 3e-03 |
| Vesicle-mediated transport | 7 | 8.1× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| obsolete vesicle docking | 5 | 95.8× | 8e-07 |
| exocytosis | 5 | 19.0× | 7e-04 |
| neuron projection development | 5 | 15.3× | 2e-03 |
| intracellular protein transport | 9 | 14.6× | 1e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
260 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 20 |
| Uncertain significance | 82 |
| Likely benign | 110 |
| Benign | 23 |
Top pathogenic / likely-pathogenic (23)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1707536 | NM_130811.4(SNAP25):c.596C>A (p.Ala199Glu) | Pathogenic |
| 1712269 | NM_130811.4(SNAP25):c.529C>T (p.Gln177Ter) | Pathogenic |
| 3899925 | SNAP25, VAL48PHE | Pathogenic |
| 1066155 | NM_130811.4(SNAP25):c.593G>C (p.Arg198Pro) | Likely pathogenic |
| 1172639 | NM_130811.4(SNAP25):c.118A>G (p.Lys40Glu) | Likely pathogenic |
| 1285517 | NM_130811.4(SNAP25):c.149T>C (p.Leu50Ser) | Likely pathogenic |
| 1285518 | NM_130811.4(SNAP25):c.170T>G (p.Leu57Arg) | Likely pathogenic |
| 1285522 | NM_130811.4(SNAP25):c.496G>T (p.Asp166Tyr) | Likely pathogenic |
| 1285523 | NM_130811.4(SNAP25):c.497A>G (p.Asp166Gly) | Likely pathogenic |
| 1285524 | NM_130811.4(SNAP25):c.521A>C (p.Gln174Pro) | Likely pathogenic |
| 1285525 | NM_130811.4(SNAP25):c.575T>C (p.Ile192Thr) | Likely pathogenic |
| 1285527 | NM_130811.4(SNAP25):c.72+1G>A | Likely pathogenic |
| 1285528 | NM_130811.4(SNAP25):c.114+2T>G | Likely pathogenic |
| 1285529 | NM_130811.4(SNAP25):c.520C>T (p.Gln174Ter) | Likely pathogenic |
| 1685449 | NM_130811.4(SNAP25):c.170T>C (p.Leu57Pro) | Likely pathogenic |
| 1708244 | NM_130811.4(SNAP25):c.164-252del | Likely pathogenic |
| 208672 | NM_130811.4(SNAP25):c.142G>T (p.Val48Phe) | Likely pathogenic |
| 2107892 | NM_130811.4(SNAP25):c.74C>T (p.Ser25Leu) | Likely pathogenic |
| 2814496 | NM_130811.4(SNAP25):c.542T>A (p.Ile181Asn) | Likely pathogenic |
| 2834612 | NM_130811.4(SNAP25):c.508_528dup (p.Arg176_Gln177insGluIleAspThrGlnAsnArg) | Likely pathogenic |
| 3235704 | NM_130811.4(SNAP25):c.550_552del (p.Lys184del) | Likely pathogenic |
| 803598 | NM_130811.4(SNAP25):c.553G>C (p.Ala185Pro) | Likely pathogenic |
| 986340 | NM_130811.4(SNAP25):c.589C>T (p.Gln197Ter) | Likely pathogenic |
SpliceAI
1638 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 20:10218975:CAGGT:C | donor_loss | 1.0000 |
| 20:10218976:AGGTA:A | donor_loss | 1.0000 |
| 20:10218977:GGTAA:G | donor_loss | 1.0000 |
| 20:10218978:GTA:G | donor_loss | 1.0000 |
| 20:10218979:T:A | donor_loss | 1.0000 |
| 20:10275425:CCA:C | acceptor_loss | 1.0000 |
| 20:10275426:CA:C | acceptor_loss | 1.0000 |
| 20:10275427:A:AG | acceptor_gain | 1.0000 |
| 20:10275428:G:GG | acceptor_gain | 1.0000 |
| 20:10275428:G:GT | acceptor_loss | 1.0000 |
| 20:10275560:TGAGG:T | donor_loss | 1.0000 |
| 20:10275561:GAG:G | donor_gain | 1.0000 |
| 20:10275562:AGGTA:A | donor_loss | 1.0000 |
| 20:10275563:GGTAA:G | donor_loss | 1.0000 |
| 20:10275564:G:GC | donor_loss | 1.0000 |
| 20:10275565:T:A | donor_loss | 1.0000 |
| 20:10277676:A:AG | acceptor_gain | 1.0000 |
| 20:10277677:A:G | acceptor_gain | 1.0000 |
| 20:10284686:A:AG | acceptor_gain | 1.0000 |
| 20:10284687:A:G | acceptor_gain | 1.0000 |
| 20:10296921:ATAG:A | acceptor_gain | 1.0000 |
| 20:10299245:A:AG | acceptor_gain | 1.0000 |
| 20:10299246:A:G | acceptor_gain | 1.0000 |
| 20:10299258:T:TA | acceptor_gain | 1.0000 |
| 20:10299263:CCCAG:C | acceptor_loss | 1.0000 |
| 20:10299264:CCAG:C | acceptor_loss | 1.0000 |
| 20:10299265:CAGG:C | acceptor_loss | 1.0000 |
| 20:10299266:A:AC | acceptor_loss | 1.0000 |
| 20:10299266:A:AG | acceptor_gain | 1.0000 |
| 20:10299266:AG:A | acceptor_gain | 1.0000 |
AlphaMissense
1400 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 20:10284736:G:C | G43R | 1.000 |
| 20:10284737:G:A | G43D | 1.000 |
| 20:10284767:A:C | Q53P | 1.000 |
| 20:10293217:G:C | A74P | 1.000 |
| 20:10299309:T:C | L150P | 1.000 |
| 20:10299339:T:C | L160P | 1.000 |
| 20:10299350:G:C | A164P | 1.000 |
| 20:10299351:C:A | A164D | 1.000 |
| 20:10306159:G:C | A195P | 1.000 |
| 20:10306171:G:C | A199P | 1.000 |
| 20:10277685:T:C | S25P | 0.999 |
| 20:10277689:T:C | L26P | 0.999 |
| 20:10277698:C:T | T29I | 0.999 |
| 20:10277701:G:C | R30P | 0.999 |
| 20:10277704:G:C | R31P | 0.999 |
| 20:10277707:T:G | M32R | 0.999 |
| 20:10277716:T:C | L35P | 0.999 |
| 20:10284724:A:C | S39R | 0.999 |
| 20:10284726:T:A | S39R | 0.999 |
| 20:10284726:T:G | S39R | 0.999 |
| 20:10284733:G:C | A42P | 0.999 |
| 20:10284758:T:C | L50S | 0.999 |
| 20:10284758:T:G | L50W | 0.999 |
| 20:10284761:A:T | D51V | 0.999 |
| 20:10293167:T:C | L57P | 0.999 |
| 20:10293173:G:C | R59P | 0.999 |
| 20:10299307:C:A | N149K | 0.999 |
| 20:10299307:C:G | N149K | 0.999 |
| 20:10299337:C:A | N159K | 0.999 |
| 20:10299337:C:G | N159K | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000067906 (20:10273590 G>T), RS1000069708 (20:10288171 A>G,T), RS1000118820 (20:10281807 C>T), RS1000128029 (20:10238136 A>G), RS1000160366 (20:10307237 T>C), RS1000175754 (20:10251412 T>C), RS1000176708 (20:10287645 C>T), RS1000197582 (20:10239356 A>G), RS1000246623 (20:10231584 A>C,T), RS1000261113 (20:10306854 T>C,G), RS1000270019 (20:10287962 G>A), RS1000337847 (20:10292528 G>A), RS1000339541 (20:10217849 C>A), RS1000348392 (20:10268110 C>G), RS1000405586 (20:10281460 T>C)
Disease associations
OMIM: gene MIM:600322 | disease phenotypes: MIM:616330, MIM:300672
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital myasthenic syndrome 18 | Strong | Autosomal dominant |
| neurodevelopmental disorder | Strong | Autosomal dominant |
| genetic developmental and epileptic encephalopathy | Moderate | Autosomal dominant |
| presynaptic congenital myasthenic syndrome | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| genetic developmental and epileptic encephalopathy | Definitive | AD |
Mondo (13): congenital myasthenic syndrome 18 (MONDO:0014590), developmental and epileptic encephalopathy (MONDO:0100620), microcephaly (MONDO:0001149), stereotypic movement disorder (MONDO:0002265), optic atrophy (MONDO:0003608), developmental and epileptic encephalopathy, 2 (MONDO:0010396), presynaptic congenital myasthenic syndrome (MONDO:0700466), intellectual disability (MONDO:0001071), focal epilepsy (MONDO:0005384), epilepsy with generalized tonic-clonic seizures (MONDO:0005754), neurodevelopmental disorder (MONDO:0700092), genetic developmental and epileptic encephalopathy (MONDO:0100062), (MONDO:0020345)
Orphanet (7): Congenital myasthenic syndrome (Orphanet:590), Early infantile developmental and epileptic encephalopathy (Orphanet:1934), West syndrome (Orphanet:3451), CDKL5-deficiency disorder (Orphanet:505652), Presynaptic congenital myasthenic syndromes (Orphanet:98914), Epilepsy with generalized tonic-clonic seizures alone (Orphanet:698005), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
77 total (30 of 77 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000218 | High palate |
| HP:0000276 | Long face |
| HP:0000308 | Microretrognathia |
| HP:0000369 | Low-set ears |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000467 | Neck muscle weakness |
| HP:0000508 | Ptosis |
| HP:0000565 | Esotropia |
| HP:0000602 | Ophthalmoplegia |
| HP:0000639 | Nystagmus |
| HP:0000651 | Diplopia |
| HP:0000768 | Pectus carinatum |
| HP:0000961 | Cyanosis |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001265 | Hyporeflexia |
| HP:0001270 | Motor delay |
| HP:0001283 | Bulbar palsy |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001374 | Congenital hip dislocation |
| HP:0001382 | Joint hypermobility |
| HP:0001558 | Decreased fetal movement |
| HP:0001561 | Polyhydramnios |
| HP:0001611 | Hypernasal speech |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000960_19 | Cardiac hypertrophy | 9.000000e-06 |
| GCST004682_5 | Psychosis proneness (hypomanic personality scale and revised social anhedonia scale) | 3.000000e-06 |
| GCST010149_1 | Brain imaging measurements (variance) | 2.000000e-08 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0002503 | cardiac hypertrophy |
| EFO:0008337 | psychosis predisposition measurement |
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D004828 | Epilepsies, Partial | C10.228.140.490.360 |
| D004830 | Epilepsy, Tonic-Clonic | C10.228.140.490.375.290 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D019956 | Stereotypic Movement Disorder | F03.625.984 |
| C564064 | CDKL5 deficiency disorder (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2364159 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
4 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs363020 | SNAP25 | 0.00 | 0 | ||
| rs3746544 | SNAP25 | 0.00 | 0 | ||
| rs1051312 | SNAP25 | 0.00 | 0 | ||
| rs8636 | SNAP25 | 0.00 | 0 |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases expression | 10 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| bisphenol A | affects methylation, decreases methylation | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation, affects reaction, decreases expression, affects methylation | 2 |
| Lipopolysaccharides | affects expression, increases expression, affects reaction, affects response to substance | 2 |
| Tretinoin | affects binding, increases reaction, increases expression, affects reaction | 2 |
| Asbestos, Crocidolite | decreases expression | 2 |
| Botulinum Toxins, Type A | increases cleavage | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| methylselenic acid | increases expression | 1 |
| sulforaphane | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | increases expression, affects response to substance | 1 |
| beta-methylcholine | affects expression | 1 |
| bicalutamide | increases expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| deguelin | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| PCI 5002 | affects cotreatment, decreases expression | 1 |
| Olanzapine | affects response to substance | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B7VP | Abcam SH-SY5Y SNAP25 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
490 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
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Related Atlas pages
- Associated diseases: genetic developmental and epileptic encephalopathy, congenital myasthenic syndrome 18, presynaptic congenital myasthenic syndrome, neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital myasthenic syndrome 18, developmental and epileptic encephalopathy, developmental and epileptic encephalopathy, 2, epilepsy with generalized tonic-clonic seizures, focal epilepsy, genetic developmental and epileptic encephalopathy, microcephaly, neurodevelopmental disorder, optic atrophy, presynaptic congenital myasthenic syndrome, stereotypic movement disorder