SNAP47
gene geneOn this page
Also known as SVAP1SNAP-47
Summary
SNAP47 (synaptosome associated protein 47, HGNC:30669) is a protein-coding gene on chromosome 1q42.13, encoding Synaptosomal-associated protein 47 (Q5SQN1). Plays a role in intracellular membrane fusion.
Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to act upstream of or within long-term synaptic potentiation. Located in BLOC-1 complex.
Source: NCBI Gene 116841 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 94 total
- MANE Select transcript:
NM_053052
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30669 |
| Approved symbol | SNAP47 |
| Name | synaptosome associated protein 47 |
| Location | 1q42.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SVAP1, SNAP-47 |
| Ensembl gene | ENSG00000143740 |
| Ensembl biotype | protein_coding |
| OMIM | 619659 |
| Entrez | 116841 |
Gene structure
Transcript identifiers
Ensembl transcripts: 45 — 37 protein_coding, 7 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000315781, ENST00000366759, ENST00000366760, ENST00000418653, ENST00000426344, ENST00000470038, ENST00000475930, ENST00000478768, ENST00000480265, ENST00000480897, ENST00000491439, ENST00000606873, ENST00000617596, ENST00000679561, ENST00000679575, ENST00000680202, ENST00000680695, ENST00000680854, ENST00000680992, ENST00000681006, ENST00000681149, ENST00000681242, ENST00000681252, ENST00000681447, ENST00000681465, ENST00000681554, ENST00000681678, ENST00000681685, ENST00000681827, ENST00000681929, ENST00000857367, ENST00000857368, ENST00000857369, ENST00000857370, ENST00000857371, ENST00000857372, ENST00000857373, ENST00000857374, ENST00000928311, ENST00000928312, ENST00000972178, ENST00000972179, ENST00000972180, ENST00000972181, ENST00000972182
RefSeq mRNA: 7 — MANE Select: NM_053052
NM_001323930, NM_001323931, NM_001323932, NM_001323933, NM_001323934, NM_001323935, NM_053052
CCDS: CCDS81429
Canonical transcript exons
ENST00000617596 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001442552 | 227780527 | 227781226 |
| ENSE00003664029 | 227758995 | 227759485 |
| ENSE00003719098 | 227766959 | 227767083 |
| ENSE00003731794 | 227747692 | 227748233 |
| ENSE00003742491 | 227735435 | 227735499 |
Expression profiles
Bgee: expression breadth ubiquitous, 260 present calls, max score 96.23.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 15.0167 / max 86.1217, expressed in 1796 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8903 | 12.7251 | 1786 |
| 8901 | 1.5774 | 755 |
| 8902 | 0.3592 | 196 |
| 8904 | 0.3550 | 129 |
Top tissues by expression
261 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pancreatic ductal cell | CL:0002079 | 96.23 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.10 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 94.10 | gold quality |
| apex of heart | UBERON:0002098 | 93.87 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.74 | gold quality |
| nucleus accumbens | UBERON:0001882 | 93.68 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.57 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 93.50 | gold quality |
| left ovary | UBERON:0002119 | 93.48 | gold quality |
| adrenal cortex | UBERON:0001235 | 93.26 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 93.17 | gold quality |
| right ovary | UBERON:0002118 | 93.16 | gold quality |
| putamen | UBERON:0001874 | 93.11 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 93.11 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 92.96 | gold quality |
| right adrenal gland | UBERON:0001233 | 92.95 | gold quality |
| tibialis anterior | UBERON:0001385 | 92.88 | silver quality |
| caudate nucleus | UBERON:0001873 | 92.78 | gold quality |
| cortical plate | UBERON:0005343 | 92.74 | gold quality |
| neocortex | UBERON:0001950 | 92.58 | gold quality |
| frontal cortex | UBERON:0001870 | 92.54 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.54 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 92.41 | gold quality |
| primary visual cortex | UBERON:0002436 | 92.14 | gold quality |
| left testis | UBERON:0004533 | 92.08 | gold quality |
| adrenal gland | UBERON:0002369 | 92.06 | gold quality |
| right testis | UBERON:0004534 | 91.61 | gold quality |
| cerebral cortex | UBERON:0000956 | 91.55 | gold quality |
| amygdala | UBERON:0001876 | 91.50 | gold quality |
| ovary | UBERON:0000992 | 91.39 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 8.03 |
| E-ANND-3 | yes | 4.63 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
17 targeting SNAP47, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-609 | 99.82 | 64.26 | 505 |
| HSA-MIR-204-5P | 99.79 | 71.62 | 2439 |
| HSA-MIR-211-5P | 99.79 | 71.65 | 2440 |
| HSA-MIR-4719 | 99.73 | 72.10 | 3329 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-5580-5P | 99.38 | 66.96 | 1139 |
| HSA-MIR-16-2-3P | 99.29 | 70.60 | 1954 |
| HSA-MIR-195-3P | 99.29 | 70.61 | 1954 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-548AT-3P | 98.37 | 64.98 | 580 |
| HSA-MIR-548AY-3P | 98.37 | 65.14 | 562 |
| HSA-MIR-4773 | 98.35 | 67.30 | 1710 |
| HSA-MIR-4523 | 85.64 | 61.16 | 64 |
Literature-anchored findings (GeneRIF, showing 4)
- Three proteins are identified: PAI-RBP1, C1orf142, and COTL1, which are differentially expressed in non-small cell lung cancer cell lines with different metastatic potential. (PMID:22373659)
- SNAP47 Interacts with ATG14 to Promote VP1 Conjugation and CVB3 Propagation. (PMID:34440910)
- A novel identified circular RNA, circSnap47, promotes heart failure progression via regulation of miR-223-3p/MAPK axis. (PMID:35900666)
- The STX17-SNAP47-VAMP7/VAMP8 complex is the default SNARE complex mediating autophagosome-lysosome fusion. (PMID:38182888)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | snap47 | ENSDARG00000063445 |
| mus_musculus | Snap47 | ENSMUSG00000009894 |
| rattus_norvegicus | Snap47 | ENSRNOG00000022472 |
Paralogs (3): SNAP23 (ENSG00000092531), SNAP29 (ENSG00000099940), SNAP25 (ENSG00000132639)
Protein
Protein identifiers
Synaptosomal-associated protein 47 — Q5SQN1 (reviewed: Q5SQN1)
Alternative names: Epididymis luminal protein 170, Synaptosomal-associated 47 kDa protein
All UniProt accessions (11): Q5SQN1, A0A087X0B7, A0A087X2J6, A0A7P0T899, A0A7P0T8U4, A0A7P0T9T2, A0A7P0TBK4, A0A7P0Z4P6, H0Y627, H7C3C7, U3KPT7
UniProt curated annotations — full annotation on UniProt →
Function. Plays a role in intracellular membrane fusion.
Subunit / interactions. Forms a complex containing SNAP47, VAMP2 and STX1A. Associates with the BLOC-1 complex. Interacts with BLOC1S6.
Subcellular location. Endomembrane system. Cytoplasm. Perinuclear region.
Similarity. Belongs to the SVAP1 family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5SQN1-1 | 1 | yes |
| Q5SQN1-2 | 2 | |
| Q5SQN1-3 | 3 | |
| Q5SQN1-4 | 4 |
RefSeq proteins (7): NP_001310859, NP_001310860, NP_001310861, NP_001310862, NP_001310863, NP_001310864, NP_444280* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000727 | T_SNARE_dom | Domain |
| IPR004182 | GRAM | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
Pfam: PF02893
UniProt features (11 total): sequence variant 4, domain 2, splice variant 2, chain 1, sequence conflict 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5SQN1-F1 | 70.80 | 0.17 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 183 (showing top):
GOCC_VACUOLAR_MEMBRANE, GOBP_VESICLE_ORGANIZATION, GOBP_MEMBRANE_FUSION, GOBP_NEUROTRANSMITTER_TRANSPORT, GOBP_VESICLE_MEDIATED_TRANSPORT, GOBP_MACROAUTOPHAGY, GOBP_CELL_CELL_SIGNALING, GOBP_EXOCYTOSIS, GOBP_VESICLE_FUSION_TO_PLASMA_MEMBRANE, GOBP_ORGANELLE_MEMBRANE_FUSION, MODULE_206, GOBP_SECRETION, GOBP_SIGNAL_RELEASE, GOBP_ENDOMEMBRANE_SYSTEM_ORGANIZATION, ZHOU_INFLAMMATORY_RESPONSE_LIVE_DN
GO Biological Process (6): exocytosis (GO:0006887), synaptic vesicle priming (GO:0016082), synaptic vesicle fusion to presynaptic active zone membrane (GO:0031629), long-term synaptic potentiation (GO:0060291), exocytic insertion of neurotransmitter receptor to postsynaptic membrane (GO:0098967), vesicle-mediated transport in synapse (GO:0099003)
GO Molecular Function (3): SNAP receptor activity (GO:0005484), syntaxin binding (GO:0019905), protein binding (GO:0005515)
GO Cellular Component (16): plasma membrane (GO:0005886), endomembrane system (GO:0012505), SNARE complex (GO:0031201), perinuclear region of cytoplasm (GO:0048471), presynapse (GO:0098793), cytoplasm (GO:0005737), postsynaptic density (GO:0014069), membrane (GO:0016020), dendrite (GO:0030425), BLOC-1 complex (GO:0031083), asymmetric synapse (GO:0032279), neuronal cell body (GO:0043025), synapse (GO:0045202), presynaptic active zone (GO:0048786), hippocampal mossy fiber to CA3 synapse (GO:0098686), glutamatergic synapse (GO:0098978)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| synapse | 3 |
| vesicle-mediated transport | 2 |
| vesicle fusion to plasma membrane | 2 |
| synaptic vesicle exocytosis | 2 |
| cytoplasm | 2 |
| neuron to neuron synapse | 2 |
| secretion by cell | 1 |
| protein-containing complex assembly | 1 |
| exocytic process | 1 |
| synaptic vesicle membrane organization | 1 |
| regulation of synaptic plasticity | 1 |
| positive regulation of synaptic transmission | 1 |
| exocytosis | 1 |
| neurotransmitter receptor transport to postsynaptic membrane | 1 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 1 |
| protein-macromolecule adaptor activity | 1 |
| membrane fusion | 1 |
| fusogenic activity | 1 |
| SNARE binding | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
| membrane protein complex | 1 |
| intracellular anatomical structure | 1 |
| asymmetric synapse | 1 |
| postsynaptic specialization | 1 |
| neuron projection | 1 |
| dendritic tree | 1 |
| BLOC complex | 1 |
| postsynaptic density | 1 |
| somatodendritic compartment | 1 |
| cell body | 1 |
| cell junction | 1 |
| presynapse | 1 |
| thorny excrescence | 1 |
| hippocampal mossy fiber expansion | 1 |
Protein interactions and networks
STRING
1348 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SNAP47 | SNAP29 | O95721 | 818 |
| SNAP47 | VAMP2 | P19065 | 812 |
| SNAP47 | STX3 | Q13277 | 797 |
| SNAP47 | SNAP23 | O00161 | 717 |
| SNAP47 | STX1A | Q16623 | 713 |
| SNAP47 | YKT6 | O15498 | 676 |
| SNAP47 | STX4 | Q12846 | 661 |
| SNAP47 | SYT2 | Q8N9I0 | 617 |
| SNAP47 | VAMP7 | P51809 | 595 |
| SNAP47 | AOC3 | Q16853 | 591 |
| SNAP47 | SNAP25 | P13795 | 536 |
| SNAP47 | TRIM67 | Q6ZTA4 | 522 |
| SNAP47 | VAMP4 | O75379 | 518 |
| SNAP47 | STX16 | O14662 | 507 |
| SNAP47 | JMJD4 | Q9H9V9 | 501 |
IntAct
160 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| Stx1a | Stxbp1 | psi-mi:“MI:0914”(association) | 0.920 |
| STX18 | NBAS | psi-mi:“MI:0914”(association) | 0.810 |
| STX12 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.740 |
| FAM9C | SNAP29 | psi-mi:“MI:0914”(association) | 0.740 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| FAM9C | NDC80 | psi-mi:“MI:0914”(association) | 0.670 |
| USE1 | NBAS | psi-mi:“MI:0914”(association) | 0.640 |
| STX7 | SNAP23 | psi-mi:“MI:0914”(association) | 0.640 |
| STX12 | SNAP23 | psi-mi:“MI:0914”(association) | 0.640 |
| MAGEA6 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GOLGA2 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| STX4 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLC3 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP57L1 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP47 | FAM9B | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP47 | FATE1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPAG5 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP47 | MID2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP47 | GOLGA2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNAP47 | CEP57L1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FATE1 | SNAP47 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (213): SNAP47 (Two-hybrid), SNAP47 (Two-hybrid), SNAP47 (Two-hybrid), SNAP47 (Two-hybrid), SNAP47 (Two-hybrid), SNAP47 (Two-hybrid), KLC3 (Two-hybrid), FAM9B (Two-hybrid), CEP57L1 (Two-hybrid), SNAP47 (Affinity Capture-MS), SNAP47 (Affinity Capture-MS), SNAP47 (Affinity Capture-MS), SNAP47 (Affinity Capture-MS), SNAP47 (Affinity Capture-MS), SNAP47 (Affinity Capture-MS)
ESM2 similar proteins: A2BID5, A4D1P6, A5WW21, A6QP11, B2RYI0, E9PUQ8, E9PXF8, O14976, O15068, P0CI65, P32019, P57075, P70600, P97874, Q008S8, Q0P4A7, Q0V9N0, Q14289, Q16760, Q2HJE1, Q2I6J0, Q3U213, Q5FVC7, Q5R6T6, Q5SQN1, Q5SVR0, Q5ZK62, Q5ZLL7, Q5ZLR6, Q63406, Q64096, Q66K14, Q6IVG4, Q6NTN5, Q6P6S0, Q6TEN6, Q6ZQK5, Q7TMQ7, Q7TT49, Q7TT50
Diamond homologs: A6QP11, Q0P4A7, Q5SQN1, Q6P6S0, Q8R570
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 115 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Intra-Golgi traffic | 5 | 19.4× | 2e-04 |
| trans-Golgi Network Vesicle Budding | 5 | 18.9× | 2e-04 |
| Intra-Golgi and retrograde Golgi-to-ER traffic | 9 | 14.1× | 4e-06 |
| COPII-mediated vesicle transport | 5 | 12.2× | 6e-04 |
| Golgi-to-ER retrograde transport | 6 | 11.9× | 2e-04 |
| COPI-dependent Golgi-to-ER retrograde traffic | 7 | 11.6× | 8e-05 |
| ER-Phagosome pathway | 5 | 9.7× | 1e-03 |
| Cargo recognition for clathrin-mediated endocytosis | 5 | 7.8× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| vesicle fusion | 10 | 62.0× | 2e-13 |
| obsolete vesicle docking | 7 | 55.3× | 9e-09 |
| membrane fusion | 5 | 32.2× | 5e-05 |
| Golgi to plasma membrane protein transport | 5 | 27.1× | 9e-05 |
| retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | 5 | 17.4× | 6e-04 |
| exocytosis | 8 | 12.5× | 3e-05 |
| cellular response to type II interferon | 5 | 10.7× | 4e-03 |
| intracellular protein transport | 13 | 8.7× | 7e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
94 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 70 |
| Likely benign | 7 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2354 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:227732675:ACC:A | acceptor_loss | 1.0000 |
| 1:227732677:C:CC | acceptor_gain | 1.0000 |
| 1:227733023:TCATC:T | acceptor_gain | 1.0000 |
| 1:227733024:CATC:C | acceptor_gain | 1.0000 |
| 1:227733024:CATCC:C | acceptor_gain | 1.0000 |
| 1:227733025:ATCCT:A | acceptor_loss | 1.0000 |
| 1:227733026:TC:T | acceptor_gain | 1.0000 |
| 1:227733026:TCCTG:T | acceptor_loss | 1.0000 |
| 1:227733027:CC:C | acceptor_gain | 1.0000 |
| 1:227733028:C:A | acceptor_loss | 1.0000 |
| 1:227733028:C:CC | acceptor_gain | 1.0000 |
| 1:227733029:T:A | acceptor_loss | 1.0000 |
| 1:227733408:CATTA:C | donor_loss | 1.0000 |
| 1:227733409:ATTAC:A | donor_loss | 1.0000 |
| 1:227733410:TTAC:T | donor_loss | 1.0000 |
| 1:227733411:TACCA:T | donor_loss | 1.0000 |
| 1:227733412:A:C | donor_loss | 1.0000 |
| 1:227733469:T:TA | donor_gain | 1.0000 |
| 1:227733642:CCAG:C | acceptor_gain | 1.0000 |
| 1:227733643:CAGC:C | acceptor_gain | 1.0000 |
| 1:227733901:CCTCA:C | donor_loss | 1.0000 |
| 1:227733902:CTCA:C | donor_loss | 1.0000 |
| 1:227733905:A:AC | donor_gain | 1.0000 |
| 1:227733905:ACCAG:A | donor_loss | 1.0000 |
| 1:227733906:C:CC | donor_gain | 1.0000 |
| 1:227733906:CCAG:C | donor_gain | 1.0000 |
| 1:227734721:T:A | donor_gain | 1.0000 |
| 1:227734977:T:A | donor_gain | 1.0000 |
| 1:227735015:AGGT:A | donor_gain | 1.0000 |
| 1:227735024:G:C | donor_gain | 1.0000 |
AlphaMissense
2744 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:227747975:T:C | F125S | 0.992 |
| 1:227747800:T:A | W67R | 0.985 |
| 1:227747800:T:C | W67R | 0.985 |
| 1:227759213:T:A | I284K | 0.984 |
| 1:227759300:T:A | I313N | 0.984 |
| 1:227747842:T:C | F81L | 0.983 |
| 1:227747844:C:A | F81L | 0.983 |
| 1:227747844:C:G | F81L | 0.983 |
| 1:227747764:T:A | W55R | 0.981 |
| 1:227747764:T:C | W55R | 0.981 |
| 1:227747802:G:C | W67C | 0.980 |
| 1:227747802:G:T | W67C | 0.980 |
| 1:227747843:T:C | F81S | 0.980 |
| 1:227759357:T:G | M332R | 0.980 |
| 1:227747776:T:G | Y59D | 0.977 |
| 1:227759213:T:G | I284R | 0.975 |
| 1:227759357:T:A | M332K | 0.974 |
| 1:227748025:T:C | F142L | 0.973 |
| 1:227748027:C:A | F142L | 0.973 |
| 1:227748027:C:G | F142L | 0.973 |
| 1:227759186:T:C | L275P | 0.972 |
| 1:227759270:T:A | I303N | 0.970 |
| 1:227747929:T:C | F110L | 0.969 |
| 1:227747931:C:A | F110L | 0.969 |
| 1:227747931:C:G | F110L | 0.969 |
| 1:227747977:A:C | S126R | 0.969 |
| 1:227747979:C:A | S126R | 0.969 |
| 1:227747979:C:G | S126R | 0.969 |
| 1:227759192:T:A | V277D | 0.969 |
| 1:227747816:T:C | L72P | 0.968 |
dbSNP variants (sampled 300 via entrez): RS1000063862 (1:227779384 G>A), RS1000114768 (1:227765252 A>G), RS1000119087 (1:227765460 A>G), RS1000195863 (1:227765942 T>G), RS1000199559 (1:227767934 C>T), RS1000252452 (1:227765000 G>A), RS1000272274 (1:227736405 C>A), RS1000462676 (1:227763943 G>C), RS1000483316 (1:227768210 A>C,T), RS1000489218 (1:227749149 C>T), RS1000541743 (1:227758119 C>T), RS1000598162 (1:227763728 T>C), RS1000628627 (1:227746578 G>C), RS1000713555 (1:227752477 G>A), RS1000727486 (1:227773437 A>T)
Disease associations
OMIM: gene MIM:619659 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003542_210 | Night sleep phenotypes | 7.000000e-06 |
| GCST008163_362 | Height | 2.000000e-09 |
| GCST012227_1221 | Hip circumference adjusted for BMI | 2.000000e-09 |
| GCST90020025_1288 | Waist-to-hip ratio adjusted for BMI | 5.000000e-08 |
| GCST90020027_1588 | Waist-hip index | 4.000000e-09 |
| GCST90020028_419 | Hip circumference adjusted for BMI | 4.000000e-08 |
| GCST90020029_635 | Waist circumference adjusted for body mass index | 3.000000e-09 |
| GCST90020029_636 | Waist circumference adjusted for body mass index | 8.000000e-13 |
| GCST90020029_637 | Waist circumference adjusted for body mass index | 3.000000e-13 |
| GCST90020029_638 | Waist circumference adjusted for body mass index | 8.000000e-10 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008039 | BMI-adjusted hip circumference |
| EFO:0007788 | BMI-adjusted waist-hip ratio |
| EFO:0007789 | BMI-adjusted waist circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
17 total (human), top 17 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Cisplatin | affects cotreatment, increases expression, decreases expression, decreases response to substance | 2 |
| alpha-pinene | affects cotreatment, affects expression, increases abundance | 1 |
| pirinixic acid | increases activity, affects binding, decreases expression | 1 |
| aflatoxin B2 | increases methylation | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, affects expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Acrolein | affects cotreatment, affects expression, increases abundance | 1 |
| Air Pollutants | affects cotreatment, affects expression, increases abundance | 1 |
| Ozone | affects cotreatment, affects expression, increases abundance | 1 |
| Smoke | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, affects expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.