SNCAIP-AS1

Summary

SNCAIP-AS1 (SNCAIP antisense RNA 1, HGNC:40559) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40559
Approved symbol	SNCAIP-AS1
Name	SNCAIP antisense RNA 1
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249916
Ensembl biotype	lncRNA
Entrez	139281658
RNAcentral	URS00000246C9 — lncRNA, 563 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000507143

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507143 — 4 exons

Exon	Start	End
ENSE00002032173	122371706	122371777
ENSE00002040553	122371357	122371494
ENSE00002074077	122383470	122383568
ENSE00002081002	122369762	122370015

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 90.19.

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.19	gold quality
colonic epithelium	UBERON:0000397	73.59	gold quality
ganglionic eminence	UBERON:0004023	67.04	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	59.96	gold quality
bone marrow	UBERON:0002371	59.82	gold quality
right lung	UBERON:0002167	59.14	gold quality
mucosa of transverse colon	UBERON:0004991	57.70	gold quality
corpus callosum	UBERON:0002336	57.12	gold quality
liver	UBERON:0002107	57.03	gold quality
right lobe of liver	UBERON:0001114	56.88	gold quality
monocyte	CL:0000576	55.66	gold quality
calcaneal tendon	UBERON:0003701	54.75	gold quality
islet of Langerhans	UBERON:0000006	53.87	gold quality
uterine cervix	UBERON:0000002	53.17	silver quality
blood	UBERON:0000178	52.88	gold quality
myometrium	UBERON:0001296	52.81	gold quality
transverse colon	UBERON:0001157	51.57	gold quality
upper lobe of left lung	UBERON:0008952	51.47	gold quality
lung	UBERON:0002048	51.08	gold quality
colon	UBERON:0001155	50.73	gold quality
kidney	UBERON:0002113	50.44	gold quality
intestine	UBERON:0000160	50.30	gold quality
prostate gland	UBERON:0002367	50.26	gold quality
urinary bladder	UBERON:0001255	49.86	silver quality
gastrocnemius	UBERON:0001388	49.11	gold quality
adrenal tissue	UBERON:0018303	48.79	silver quality
smooth muscle tissue	UBERON:0001135	48.74	gold quality
primary visual cortex	UBERON:0002436	47.80	silver quality
cortex of kidney	UBERON:0001225	47.68	gold quality
small intestine	UBERON:0002108	47.65	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.