SNCAIP-AS3

Summary

SNCAIP-AS3 (SNCAIP antisense RNA 3, HGNC:28478) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28478
Approved symbol	SNCAIP-AS3
Name	SNCAIP antisense RNA 3
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	MGC32805
Ensembl gene	ENSG00000250328
Ensembl biotype	lncRNA
Entrez	153163

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000503529, ENST00000505546, ENST00000506053, ENST00000509993, ENST00000510972, ENST00000655818, ENST00000701367, ENST00000721142, ENST00000721143, ENST00000721144, ENST00000721145, ENST00000721146, ENST00000721147, ENST00000721148, ENST00000721149, ENST00000721150, ENST00000721151

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503529 — 2 exons

Exon	Start	End
ENSE00002049631	122437254	122437337
ENSE00002082041	122478586	122479080

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 85.82.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3461 / max 229.9493, expressed in 48 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
63141	0.2806	43
63139	0.0451	13
63138	0.0106	6
63140	0.0099	6

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.82	gold quality
right lobe of liver	UBERON:0001114	82.97	gold quality
mucosa of transverse colon	UBERON:0004991	78.95	gold quality
liver	UBERON:0002107	76.19	gold quality
colonic epithelium	UBERON:0000397	74.54	gold quality
epithelial cell of pancreas	CL:0000083	72.15	gold quality
tibialis anterior	UBERON:0001385	71.41	silver quality
upper arm skin	UBERON:0004263	70.38	gold quality
upper lobe of left lung	UBERON:0008952	69.62	gold quality
cortical plate	UBERON:0005343	69.59	gold quality
ileal mucosa	UBERON:0000331	69.42	silver quality
prostate gland	UBERON:0002367	69.12	gold quality
upper lobe of lung	UBERON:0008948	68.55	gold quality
sperm	CL:0000019	68.36	gold quality
deltoid	UBERON:0001476	67.68	gold quality
ganglionic eminence	UBERON:0004023	67.44	gold quality
calcaneal tendon	UBERON:0003701	67.27	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.87	silver quality
ventricular zone	UBERON:0003053	66.53	gold quality
transverse colon	UBERON:0001157	66.52	gold quality
myocardium	UBERON:0002349	65.88	gold quality
bone marrow cell	CL:0002092	65.45	silver quality
cardiac muscle of right atrium	UBERON:0003379	65.28	gold quality
smooth muscle tissue	UBERON:0001135	65.10	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	64.97	gold quality
left ventricle myocardium	UBERON:0006566	64.90	gold quality
vagina	UBERON:0000996	64.43	gold quality
lung	UBERON:0002048	64.38	gold quality
stromal cell of endometrium	CL:0002255	63.87	gold quality
right lung	UBERON:0002167	63.43	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	11.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.