SNCAIP-AS4

Summary

SNCAIP-AS4 (SNCAIP antisense RNA 4, HGNC:59121) is a long non-coding RNA gene on chromosome 5q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59121
Approved symbol	SNCAIP-AS4
Name	SNCAIP antisense RNA 4
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272139
Ensembl biotype	lncRNA
Entrez	144834427

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000607804

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000607804 — 1 exons

Exon	Start	End
ENSE00003698768	122311297	122311673

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 98.56.

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.56	gold quality
nucleus accumbens	UBERON:0001882	71.97	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	71.70	gold quality
ganglionic eminence	UBERON:0004023	71.16	gold quality
left testis	UBERON:0004533	69.75	gold quality
right testis	UBERON:0004534	68.71	gold quality
testis	UBERON:0000473	67.91	gold quality
putamen	UBERON:0001874	67.29	gold quality
caudate nucleus	UBERON:0001873	65.89	gold quality
myometrium	UBERON:0001296	64.79	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.23	gold quality
metanephros cortex	UBERON:0010533	62.76	gold quality
right ovary	UBERON:0002118	62.03	gold quality
cortex of kidney	UBERON:0001225	62.00	gold quality
ovary	UBERON:0000992	61.77	gold quality
left ovary	UBERON:0002119	61.62	gold quality
body of uterus	UBERON:0009853	61.58	gold quality
calcaneal tendon	UBERON:0003701	60.73	gold quality
prefrontal cortex	UBERON:0000451	60.49	gold quality
stromal cell of endometrium	CL:0002255	59.21	gold quality
endocervix	UBERON:0000458	59.20	gold quality
uterine cervix	UBERON:0000002	58.78	gold quality
right uterine tube	UBERON:0001302	58.35	gold quality
popliteal artery	UBERON:0002250	58.20	gold quality
tibial artery	UBERON:0007610	58.18	gold quality
vermiform appendix	UBERON:0001154	57.43	gold quality
brain	UBERON:0000955	57.03	gold quality
right lung	UBERON:0002167	56.55	gold quality
Ammon’s horn	UBERON:0001954	56.31	gold quality
ascending aorta	UBERON:0001496	55.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.