SNED1-AS1

Summary

SNED1-AS1 (SNED1 antisense RNA 1, HGNC:41060) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41060
Approved symbol	SNED1-AS1
Name	SNED1 antisense RNA 1
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225521
Ensembl biotype	lncRNA
Entrez	105373970
RNAcentral	URS00026A2598 — lncRNA, 9480 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000458377, ENST00000812987

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000458377 — 3 exons

Exon	Start	End
ENSE00001642471	241064080	241064116
ENSE00001731832	241015599	241016017
ENSE00001749207	241033501	241033603

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 85.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1238 / max 20.9167, expressed in 50 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34878	0.1238	50

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.00	silver quality
skeletal muscle tissue	UBERON:0001134	75.77	gold quality
sural nerve	UBERON:0015488	71.52	gold quality
corpus callosum	UBERON:0002336	70.52	gold quality
thyroid gland	UBERON:0002046	66.43	gold quality
left lobe of thyroid gland	UBERON:0001120	66.00	gold quality
colonic epithelium	UBERON:0000397	65.58	silver quality
bone marrow cell	CL:0002092	64.70	silver quality
hindlimb stylopod muscle	UBERON:0004252	63.65	gold quality
right lobe of thyroid gland	UBERON:0001119	61.91	gold quality
gastrocnemius	UBERON:0001388	61.07	gold quality
muscle of leg	UBERON:0001383	60.98	gold quality
esophagus mucosa	UBERON:0002469	59.31	gold quality
skin of leg	UBERON:0001511	59.03	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.97	gold quality
zone of skin	UBERON:0000014	58.04	gold quality
uterine cervix	UBERON:0000002	57.82	gold quality
tonsil	UBERON:0002372	57.55	gold quality
mucosa of stomach	UBERON:0001199	56.88	gold quality
liver	UBERON:0002107	56.79	gold quality
subcutaneous adipose tissue	UBERON:0002190	56.67	gold quality
skin of abdomen	UBERON:0001416	56.42	gold quality
ectocervix	UBERON:0012249	55.86	gold quality
myometrium	UBERON:0001296	55.75	gold quality
thoracic mammary gland	UBERON:0005200	55.74	gold quality
endocervix	UBERON:0000458	55.72	gold quality
prostate gland	UBERON:0002367	55.28	gold quality
monocyte	CL:0000576	55.21	gold quality
body of uterus	UBERON:0009853	55.11	gold quality
calcaneal tendon	UBERON:0003701	55.01	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.