SNHG31

Summary

SNHG31 (small nucleolar RNA host gene 31, HGNC:54196) is a long non-coding RNA gene on chromosome 2q35.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54196
Approved symbol	SNHG31
Name	small nucleolar RNA host gene 31
Location	2q35
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229267
Ensembl biotype	lncRNA
Entrez	101928103
RNAcentral	URS000075EC7A — lncRNA, 2240 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000420134, ENST00000607412, ENST00000655899, ENST00000664818, ENST00000670391, ENST00000797167, ENST00000797168, ENST00000797169, ENST00000797170, ENST00000797171, ENST00000797173, ENST00000797174, ENST00000797175, ENST00000797176, ENST00000797177, ENST00000797178, ENST00000797179, ENST00000797180, ENST00000797181, ENST00000797182, ENST00000797183, ENST00000797184, ENST00000797185, ENST00000797186

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420134 — 2 exons

Exon	Start	End
ENSE00001696995	214960392	214960590
ENSE00001733737	214961810	214962062

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 86.86.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.86	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.69	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.92	gold quality
testis	UBERON:0000473	64.74	gold quality
ventricular zone	UBERON:0003053	64.29	gold quality
left testis	UBERON:0004533	63.10	gold quality
skin of abdomen	UBERON:0001416	62.62	gold quality
sural nerve	UBERON:0015488	62.49	silver quality
right testis	UBERON:0004534	62.33	gold quality
zone of skin	UBERON:0000014	61.84	gold quality
skin of leg	UBERON:0001511	60.81	gold quality
endometrium	UBERON:0001295	60.54	gold quality
stromal cell of endometrium	CL:0002255	59.82	gold quality
ganglionic eminence	UBERON:0004023	59.33	gold quality
cortical plate	UBERON:0005343	59.02	silver quality
calcaneal tendon	UBERON:0003701	58.08	gold quality
bone marrow	UBERON:0002371	56.12	gold quality
adrenal tissue	UBERON:0018303	55.38	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.13	gold quality
tonsil	UBERON:0002372	54.75	gold quality
lymph node	UBERON:0000029	54.26	gold quality
gall bladder	UBERON:0002110	53.79	gold quality
monocyte	CL:0000576	53.75	gold quality
rectum	UBERON:0001052	53.37	gold quality
vagina	UBERON:0000996	52.96	gold quality
islet of Langerhans	UBERON:0000006	52.76	gold quality
prefrontal cortex	UBERON:0000451	52.37	gold quality
fallopian tube	UBERON:0003889	52.36	gold quality
uterine cervix	UBERON:0000002	52.31	gold quality
adenohypophysis	UBERON:0002196	52.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.