SNORD116-13

Summary

SNORD116-13 (small nucleolar RNA, C/D box 116-13, HGNC:33079) is a small nucleolar RNA gene on chromosome 15q11.2.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 100033425 — RefSeq curated summary.

At a glance

• Gene type: non-coding (snoRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33079
Approved symbol	SNORD116-13
Name	small nucleolar RNA, C/D box 116-13
Location	15q11.2
Locus type	RNA, small nucleolar
Status	Approved
Aliases	HBII-85-13
Ensembl gene	ENSG00000207137
Ensembl biotype	snoRNA
Entrez	100033425
RNAcentral	URS000075B2D2 — snoRNA, 94 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 snoRNA

ENST00000384408

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000384408 — 1 exons

Exon	Start	End
ENSE00001809292	25079058	25079149

Expression profiles

Bgee: expression breadth broad, 59 present calls, max score 85.16.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2026 / max 22.7727, expressed in 87 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
145537	0.2026	87

Top tissues by expression

59 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.16	gold quality
blood	UBERON:0000178	79.64	gold quality
adrenal tissue	UBERON:0018303	78.79	gold quality
kidney	UBERON:0002113	77.81	gold quality
heart	UBERON:0000948	75.15	gold quality
adult mammalian kidney	UBERON:0000082	74.42	gold quality
islet of Langerhans	UBERON:0000006	72.19	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.44	gold quality
stomach	UBERON:0000945	70.94	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	70.46	gold quality
liver	UBERON:0002107	70.10	gold quality
muscle of leg	UBERON:0001383	69.43	gold quality
gastrocnemius	UBERON:0001388	68.79	gold quality
substantia nigra	UBERON:0002038	68.38	gold quality
lung	UBERON:0002048	68.26	gold quality
body of stomach	UBERON:0001161	67.78	gold quality
muscle layer of sigmoid colon	UBERON:0035805	67.64	gold quality
esophagus mucosa	UBERON:0002469	66.63	gold quality
nucleus accumbens	UBERON:0001882	65.74	gold quality
heart left ventricle	UBERON:0002084	65.68	gold quality
calcaneal tendon	UBERON:0003701	65.64	gold quality
skin of leg	UBERON:0001511	65.39	gold quality
right atrium auricular region	UBERON:0006631	65.29	gold quality
left ovary	UBERON:0002119	63.38	gold quality
putamen	UBERON:0001874	63.21	gold quality
skin of abdomen	UBERON:0001416	63.16	gold quality
tibial artery	UBERON:0007610	62.74	gold quality
right hemisphere of cerebellum	UBERON:0014890	62.73	gold quality
intestine	UBERON:0000160	62.60	gold quality
omental fat pad	UBERON:0010414	62.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Paralogs (32): SNORD116-10 (ENSG00000200661), SNORD116 (ENSG00000202498), SNORD116-11 (ENSG00000206609), SNORD116-14 (ENSG00000206621), SNORD116-17 (ENSG00000206656), SNORD116-18 (ENSG00000206688), SNORD116-9 (ENSG00000206727), SNORD116-2 (ENSG00000207001), SNORD116-3 (ENSG00000207014), SNORD116-1 (ENSG00000207063), SNORD116-8 (ENSG00000207093), SNORD116-7 (ENSG00000207133), SNORD116-15 (ENSG00000207174), SNORD116-5 (ENSG00000207191), SNORD116-12 (ENSG00000207197), SNORD116-29 (ENSG00000207245), SNORD116-16 (ENSG00000207263), SNORD116-24 (ENSG00000207279), SNORD116-23 (ENSG00000207375), SNORD116-6 (ENSG00000207442), SNORD116-19 (ENSG00000207460), SNORD116 (ENSG00000212553), SNORD116-26 (ENSG00000251815), SNORD116-27 (ENSG00000251896), SNORD116-30 (ENSG00000252277), SNORD116-25 (ENSG00000252326), SNORD116 (ENSG00000252985), SNORD116-22 (ENSG00000275127), SNORD116-4 (ENSG00000275529), SNORD116-21 (ENSG00000277785), SNORD116-28 (ENSG00000278123), SNORD116-20 (ENSG00000278715)

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.