SNORD13J

Summary

SNORD13J (small nucleolar RNA, C/D box 13J, HGNC:52249) is a gene on chromosome 3p21.31.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 109617025 — RefSeq curated summary.

At a glance

• GWAS associations: 1

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52249
Approved symbol	SNORD13J
Name	small nucleolar RNA, C/D box 13J
Location	3p21.31
Locus type	RNA, small nucleolar
Status	Approved
Entrez	109617025
RNAcentral	URS0000ABD82C — snoRNA, 93 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1002780604 (3:47252050 G>A), RS1004357867 (3:47250996 C>T), RS1005866504 (3:47251566 AAAC>A), RS1006585085 (3:47251165 T>A,C), RS1007007587 (3:47252453 C>T), RS1007272748 (3:47250399 C>T), RS1008250132 (3:47250547 T>C), RS1008638767 (3:47250195 T>C), RS1010045534 (3:47252094 G>A), RS1010306077 (3:47251718 G>A,C), RS1012139227 (3:47250302 C>T), RS1013079933 (3:47251547 G>A,C), RS1013527568 (3:47251986 G>A,T), RS1018386524 (3:47250235 G>A), RS1018667599 (3:47250554 A>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

Study	Trait	p-value
GCST90013406_190	Liver enzyme levels (alkaline phosphatase)	2.000000e-17

EFO canonical traits (1, from GWAS)

EFO ID	Trait name
EFO:0004533	alkaline phosphatase measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.