SNORD48

Summary

SNORD48 (small nucleolar RNA, C/D box 48, HGNC:10188) is a small nucleolar RNA gene on chromosome 6p21.33.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 26801 — RefSeq curated summary.

At a glance

• Gene type: non-coding (snoRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:10188
Approved symbol	SNORD48
Name	small nucleolar RNA, C/D box 48
Location	6p21.33
Locus type	RNA, small nucleolar
Status	Approved
Aliases	U48
Ensembl gene	ENSG00000201823
Ensembl biotype	snoRNA
Entrez	26801
RNAcentral	URS00002E0EE8 — snoRNA, 63 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 snoRNA

ENST00000364953

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000364953 — 1 exons

Exon	Start	End
ENSE00001439716	31835263	31835326

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 99.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2218 / max 26.9472, expressed in 80 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
203948	0.2218	80

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	99.42	gold quality
vermiform appendix	UBERON:0001154	90.87	gold quality
liver	UBERON:0002107	82.76	gold quality
Brodmann (1909) area 9	UBERON:0013540	79.19	gold quality
endometrium	UBERON:0001295	77.17	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	77.16	gold quality
body of pancreas	UBERON:0001150	76.01	gold quality
monocyte	CL:0000576	75.47	gold quality
islet of Langerhans	UBERON:0000006	74.98	gold quality
placenta	UBERON:0001987	74.94	gold quality
right lobe of thyroid gland	UBERON:0001119	74.56	gold quality
lung	UBERON:0002048	73.80	gold quality
tibial nerve	UBERON:0001323	73.55	gold quality
left adrenal gland	UBERON:0001234	73.23	gold quality
left ovary	UBERON:0002119	73.21	gold quality
blood	UBERON:0000178	72.88	gold quality
body of stomach	UBERON:0001161	72.54	gold quality
duodenum	UBERON:0002114	72.40	gold quality
intestine	UBERON:0000160	72.23	gold quality
small intestine	UBERON:0002108	72.14	gold quality
stomach	UBERON:0000945	71.94	gold quality
right lobe of liver	UBERON:0001114	71.92	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.80	gold quality
colon	UBERON:0001155	71.75	gold quality
muscle of leg	UBERON:0001383	71.61	gold quality
left lobe of thyroid gland	UBERON:0001120	71.57	gold quality
body of uterus	UBERON:0009853	71.15	gold quality
vagina	UBERON:0000996	71.14	gold quality
transverse colon	UBERON:0001157	71.01	gold quality
tibial artery	UBERON:0007610	71.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.12

Regulation

Is transcription factor: no

Cross-species orthologs

2 orthologs

Organism	Symbol	Gene ID
mus_musculus	Gm25744	ENSMUSG00000092687
rattus_norvegicus	Snord48	ENSRNOG00000061471

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.