SNORD58C

Summary

SNORD58C (small nucleolar RNA, C/D box 58C, HGNC:33613) is a small nucleolar RNA gene on chromosome 18q21.1.

Predicted to be involved in RNA processing. Predicted to be located in nucleolus.

Source: NCBI Gene 100124516 — RefSeq curated summary.

At a glance

• Gene type: non-coding (snoRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33613
Approved symbol	SNORD58C
Name	small nucleolar RNA, C/D box 58C
Location	18q21.1
Locus type	RNA, small nucleolar
Status	Approved
Ensembl gene	ENSG00000202093
Ensembl biotype	snoRNA
Entrez	100124516
RNAcentral	URS000075DF00 — snoRNA, 90 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 snoRNA

ENST00000365223

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000365223 — 1 exons

Exon	Start	End
ENSE00001439986	49489245	49489308

Expression profiles

Bgee: expression breadth tissue_specific, 8 present calls, max score 97.15.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1967 / max 15.5399, expressed in 86 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
171911	0.1967	86

Top tissues by expression

8 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	97.15	gold quality
liver	UBERON:0002107	92.48	gold quality
Brodmann (1909) area 9	UBERON:0013540	88.85	gold quality
blood	UBERON:0000178	76.66	gold quality
islet of Langerhans	UBERON:0000006	68.79	gold quality
stomach	UBERON:0000945	61.95	gold quality
muscle of leg	UBERON:0001383	60.73	gold quality
gastrocnemius	UBERON:0001388	44.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

1 orthologs

Organism	Symbol	Gene ID
danio_rerio	SNORD58	ENSDARG00000082811

Paralogs (3): SNORD58A (ENSG00000206602), SNORD58 (ENSG00000212615), SNORD58B (ENSG00000271982)

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.