SNRPA1-DT

Summary

SNRPA1-DT (SNRPA1 divergent transcript, HGNC:55431) is a long non-coding RNA gene on chromosome 15q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55431
Approved symbol	SNRPA1-DT
Name	SNRPA1 divergent transcript
Location	15q26.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259172
Ensembl biotype	lncRNA
Entrez	120766138
RNAcentral	URS00026A2301 — lncRNA, 2661 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000558838, ENST00000840271, ENST00000840272, ENST00000840273, ENST00000840274

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558838 — 2 exons

Exon	Start	End
ENSE00002548361	101295419	101295729
ENSE00002569177	101303459	101305737

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 83.71.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	83.71	gold quality
liver	UBERON:0002107	76.66	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.32	gold quality
spleen	UBERON:0002106	72.74	gold quality
mucosa of transverse colon	UBERON:0004991	70.47	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	65.83	gold quality
apex of heart	UBERON:0002098	65.55	gold quality
ventricular zone	UBERON:0003053	64.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.50	gold quality
lower esophagus mucosa	UBERON:0035834	63.85	gold quality
cortical plate	UBERON:0005343	63.32	gold quality
endometrium	UBERON:0001295	63.20	gold quality
primary visual cortex	UBERON:0002436	63.13	gold quality
substantia nigra	UBERON:0002038	62.87	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.74	gold quality
Ammon’s horn	UBERON:0001954	62.05	gold quality
skeletal muscle tissue	UBERON:0001134	61.58	gold quality
ganglionic eminence	UBERON:0004023	61.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.21	gold quality
right uterine tube	UBERON:0001302	60.97	gold quality
pituitary gland	UBERON:0000007	60.59	gold quality
cerebellar hemisphere	UBERON:0002245	60.46	gold quality
cerebellar cortex	UBERON:0002129	60.45	gold quality
cerebellum	UBERON:0002037	60.33	gold quality
gastrocnemius	UBERON:0001388	60.17	gold quality
putamen	UBERON:0001874	60.04	gold quality
muscle of leg	UBERON:0001383	60.01	gold quality
brain	UBERON:0000955	59.85	gold quality
hypothalamus	UBERON:0001898	59.82	gold quality
heart left ventricle	UBERON:0002084	59.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.