SNRPF-DT

Summary

SNRPF-DT (SNRPF divergent transcript, HGNC:55452) is a long non-coding RNA gene on chromosome 12q22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55452
Approved symbol	SNRPF-DT
Name	SNRPF divergent transcript
Location	12q22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258343
Ensembl biotype	lncRNA
Entrez	105369921
RNAcentral	URS000039857B — lncRNA, 467 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 14 lncRNA, 1 retained_intron

ENST00000551893, ENST00000553163, ENST00000553194, ENST00000670743, ENST00000787979, ENST00000787980, ENST00000787981, ENST00000787982, ENST00000787983, ENST00000787984, ENST00000787985, ENST00000787986, ENST00000787987, ENST00000787988, ENST00000787989

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000551893 — 2 exons

Exon	Start	End
ENSE00004166087	95858754	95858850
ENSE00004166089	95858231	95858587

Expression profiles

Bgee: expression breadth ubiquitous, 138 present calls, max score 91.26.

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	91.26	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.35	gold quality
nasal cavity epithelium	UBERON:0005384	85.09	gold quality
tibialis anterior	UBERON:0001385	83.55	silver quality
left ventricle myocardium	UBERON:0006566	82.33	gold quality
myocardium	UBERON:0002349	81.66	gold quality
cardiac muscle of right atrium	UBERON:0003379	81.35	gold quality
quadriceps femoris	UBERON:0001377	80.98	gold quality
vastus lateralis	UBERON:0001379	80.36	gold quality
biceps brachii	UBERON:0001507	78.81	gold quality
deltoid	UBERON:0001476	78.66	silver quality
sperm	CL:0000019	78.00	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	77.93	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	76.11	gold quality
right uterine tube	UBERON:0001302	74.66	gold quality
parotid gland	UBERON:0001831	74.57	gold quality
ileal mucosa	UBERON:0000331	73.52	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.43	gold quality
kidney epithelium	UBERON:0004819	72.08	gold quality
cortical plate	UBERON:0005343	71.87	gold quality
left testis	UBERON:0004533	71.81	gold quality
right testis	UBERON:0004534	71.14	gold quality
secondary oocyte	CL:0000655	70.59	gold quality
endothelial cell	CL:0000115	69.96	gold quality
testis	UBERON:0000473	69.93	gold quality
cerebellar vermis	UBERON:0004720	69.76	gold quality
vena cava	UBERON:0004087	68.74	gold quality
lateral nuclear group of thalamus	UBERON:0002736	68.00	gold quality
mammalian vulva	UBERON:0000997	67.85	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	67.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.