SNTG2-AS1

Summary

SNTG2-AS1 (SNTG2 antisense RNA 1, HGNC:54058) is a long non-coding RNA gene on chromosome 2p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54058
Approved symbol	SNTG2-AS1
Name	SNTG2 antisense RNA 1
Location	2p25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235688
Ensembl biotype	lncRNA
Entrez	101060391
RNAcentral	URS0000A766BB — lncRNA, 772 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000456949, ENST00000684906, ENST00000689552, ENST00000691420, ENST00000692544, ENST00000758542, ENST00000758543, ENST00000758544, ENST00000758545, ENST00000758546, ENST00000758547, ENST00000758548, ENST00000758549, ENST00000758550, ENST00000758551, ENST00000758552, ENST00000758553, ENST00000758554, ENST00000758555, ENST00000758556, ENST00000758557, ENST00000758558, ENST00000758559, ENST00000758560, ENST00000758561, ENST00000758562, ENST00000758563

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000456949 — 3 exons

Exon	Start	End
ENSE00001675228	949911	950386
ENSE00001756195	949627	949801
ENSE00004110593	950548	950804

Expression profiles

Bgee: expression breadth ubiquitous, 174 present calls, max score 96.24.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2152 / max 20.0299, expressed in 90 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26646	0.0995	42
26645	0.0577	25
26647	0.0448	17
26648	0.0133	6

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	96.24	gold quality
adenohypophysis	UBERON:0002196	91.59	gold quality
pituitary gland	UBERON:0000007	91.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.95	gold quality
left testis	UBERON:0004533	89.25	gold quality
right testis	UBERON:0004534	88.94	gold quality
testis	UBERON:0000473	86.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.91	gold quality
tibial nerve	UBERON:0001323	83.56	gold quality
body of uterus	UBERON:0009853	82.57	gold quality
oocyte	CL:0000023	79.94	gold quality
secondary oocyte	CL:0000655	78.83	gold quality
left uterine tube	UBERON:0001303	78.62	gold quality
spleen	UBERON:0002106	78.29	gold quality
subcutaneous adipose tissue	UBERON:0002190	76.24	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	76.11	gold quality
tendon of biceps brachii	UBERON:0008188	75.90	gold quality
prostate gland	UBERON:0002367	75.62	gold quality
endothelial cell	CL:0000115	75.11	silver quality
adipose tissue	UBERON:0001013	73.73	gold quality
sural nerve	UBERON:0015488	73.59	gold quality
right hemisphere of cerebellum	UBERON:0014890	72.86	gold quality
mucosa of stomach	UBERON:0001199	72.49	gold quality
cerebellar hemisphere	UBERON:0002245	72.06	gold quality
cerebellar cortex	UBERON:0002129	71.83	gold quality
adipose tissue of abdominal region	UBERON:0007808	71.76	gold quality
omental fat pad	UBERON:0010414	71.73	gold quality
skin of abdomen	UBERON:0001416	71.66	gold quality
peritoneum	UBERON:0002358	71.64	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.