SNX2-AS1

Summary

SNX2-AS1 (SNX2 antisense RNA 1, HGNC:59122) is a long non-coding RNA gene on chromosome 5q23.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59122
Approved symbol	SNX2-AS1
Name	SNX2 antisense RNA 1
Location	5q23.2
Locus type	RNA, long non-coding
Status	Approved
Entrez	105379154

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000056889 (5:122834829 A>G), RS1000193567 (5:122834893 G>A,C), RS1000194016 (5:122792456 G>A,C), RS1000212823 (5:122825576 T>C), RS1000246351 (5:122832248 T>C,G), RS1000252050 (5:122798697 T>C,G), RS1000281545 (5:122798989 T>C), RS1000289283 (5:122845477 C>G,T), RS1000333930 (5:122789334 C>T), RS1000390969 (5:122838653 C>G,T), RS1000443531 (5:122838282 T>C), RS1000519365 (5:122833520 T>C), RS1000554193 (5:122815489 A>C), RS1000575872 (5:122791481 C>T), RS1000593058 (5:122790991 G>A)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.