SNX29-AS2

Summary

SNX29-AS2 (SNX29 antisense RNA 2, HGNC:58540) is a long non-coding RNA gene on chromosome 16p13.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58540
Approved symbol	SNX29-AS2
Name	SNX29 antisense RNA 2
Location	16p13.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261394
Ensembl biotype	lncRNA
Entrez	101927227

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000569490, ENST00000798564

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000569490 — 2 exons

Exon	Start	End
ENSE00004186259	12366972	12367469
ENSE00004186260	12372532	12372605

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 97.16.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	97.16	gold quality
left testis	UBERON:0004533	88.06	gold quality
testis	UBERON:0000473	87.37	gold quality
right testis	UBERON:0004534	87.22	gold quality
bone marrow	UBERON:0002371	67.14	gold quality
skeletal muscle tissue	UBERON:0001134	65.18	silver quality
hindlimb stylopod muscle	UBERON:0004252	64.99	gold quality
bone marrow cell	CL:0002092	64.97	silver quality
tonsil	UBERON:0002372	63.26	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.52	gold quality
calcaneal tendon	UBERON:0003701	57.12	gold quality
monocyte	CL:0000576	56.79	gold quality
liver	UBERON:0002107	56.30	gold quality
kidney	UBERON:0002113	56.14	gold quality
prefrontal cortex	UBERON:0000451	55.03	gold quality
corpus callosum	UBERON:0002336	54.14	gold quality
islet of Langerhans	UBERON:0000006	54.09	gold quality
blood	UBERON:0000178	53.92	silver quality
adult mammalian kidney	UBERON:0000082	53.21	gold quality
metanephros cortex	UBERON:0010533	52.75	gold quality
right lobe of liver	UBERON:0001114	52.18	gold quality
primary visual cortex	UBERON:0002436	51.99	gold quality
gall bladder	UBERON:0002110	51.57	gold quality
cortex of kidney	UBERON:0001225	51.00	gold quality
superior frontal gyrus	UBERON:0002661	50.68	gold quality
multicellular organism	UBERON:0000468	50.43	gold quality
muscle of leg	UBERON:0001383	50.18	gold quality
pancreas	UBERON:0001264	49.44	gold quality
myometrium	UBERON:0001296	49.35	silver quality
gastrocnemius	UBERON:0001388	48.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.