SNX30-DT

Summary

SNX30-DT (SNX30 divergent transcript, HGNC:55835) is a long non-coding RNA gene on chromosome 9q32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55835
Approved symbol	SNX30-DT
Name	SNX30 divergent transcript
Location	9q32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226609
Ensembl biotype	lncRNA
Entrez	122455334
RNAcentral	URS00026A1F79 — lncRNA, 547 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000440009, ENST00000671283, ENST00000821766, ENST00000821767, ENST00000821768, ENST00000821769

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000440009 — 2 exons

Exon	Start	End
ENSE00001644158	112748902	112749270
ENSE00001789691	112750406	112750456

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 96.16.

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.16	silver quality
cortical plate	UBERON:0005343	63.83	gold quality
ganglionic eminence	UBERON:0004023	63.04	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	60.61	gold quality
vermiform appendix	UBERON:0001154	59.28	gold quality
cortex of kidney	UBERON:0001225	58.99	gold quality
metanephros cortex	UBERON:0010533	58.42	gold quality
substantia nigra	UBERON:0002038	58.18	gold quality
lymph node	UBERON:0000029	57.32	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.89	gold quality
corpus callosum	UBERON:0002336	56.86	gold quality
kidney	UBERON:0002113	56.81	gold quality
mucosa of transverse colon	UBERON:0004991	56.39	gold quality
right uterine tube	UBERON:0001302	56.33	gold quality
prefrontal cortex	UBERON:0000451	56.28	gold quality
skeletal muscle tissue	UBERON:0001134	55.86	silver quality
placenta	UBERON:0001987	55.79	gold quality
duodenum	UBERON:0002114	55.73	gold quality
tonsil	UBERON:0002372	55.66	gold quality
bone marrow	UBERON:0002371	55.46	gold quality
apex of heart	UBERON:0002098	55.44	gold quality
Ammon’s horn	UBERON:0001954	55.32	gold quality
adult mammalian kidney	UBERON:0000082	55.25	gold quality
stromal cell of endometrium	CL:0002255	54.41	silver quality
liver	UBERON:0002107	54.02	gold quality
granulocyte	CL:0000094	53.70	gold quality
amygdala	UBERON:0001876	53.35	gold quality
blood	UBERON:0000178	53.25	silver quality
endometrium	UBERON:0001295	53.16	gold quality
frontal cortex	UBERON:0001870	53.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.