SNX7-DT

Summary

SNX7-DT (SNX7 divergent transcript, HGNC:56892) is a long non-coding RNA gene on chromosome 1p21.3.

At a glance

• Gene type: non-coding (TEC) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56892
Approved symbol	SNX7-DT
Name	SNX7 divergent transcript
Location	1p21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-296E3.2
Ensembl gene	ENSG00000280040
Ensembl biotype	TEC
Entrez	132192373
RNAcentral	URS0002853AC4 — lncRNA, 466 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 TEC

ENST00000623685

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000623685 — 1 exons

Exon	Start	End
ENSE00003756946	98660388	98661059

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 95.22.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	95.22	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.09	silver quality
cortical plate	UBERON:0005343	68.51	gold quality
rectum	UBERON:0001052	66.12	gold quality
ventricular zone	UBERON:0003053	65.08	gold quality
mucosa of transverse colon	UBERON:0004991	60.65	gold quality
duodenum	UBERON:0002114	60.51	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.18	gold quality
transverse colon	UBERON:0001157	58.95	gold quality
prefrontal cortex	UBERON:0000451	57.27	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.92	gold quality
superior frontal gyrus	UBERON:0002661	55.12	gold quality
intestine	UBERON:0000160	55.04	gold quality
gall bladder	UBERON:0002110	55.01	gold quality
small intestine	UBERON:0002108	54.88	gold quality
colon	UBERON:0001155	54.78	gold quality
smooth muscle tissue	UBERON:0001135	54.29	gold quality
hypothalamus	UBERON:0001898	54.29	gold quality
monocyte	CL:0000576	53.97	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.97	gold quality
islet of Langerhans	UBERON:0000006	53.42	gold quality
popliteal artery	UBERON:0002250	53.15	gold quality
tibial artery	UBERON:0007610	53.14	gold quality
calcaneal tendon	UBERON:0003701	53.11	silver quality
cortex of kidney	UBERON:0001225	52.39	gold quality
liver	UBERON:0002107	52.33	silver quality
endometrium	UBERON:0001295	51.97	gold quality
right coronary artery	UBERON:0001625	51.66	gold quality
nucleus accumbens	UBERON:0001882	51.64	gold quality
kidney	UBERON:0002113	51.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.