SNX9-AS1

Summary

SNX9-AS1 (SNX9 antisense RNA 1, HGNC:40699) is a long non-coding RNA gene on chromosome 6q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40699
Approved symbol	SNX9-AS1
Name	SNX9 antisense RNA 1
Location	6q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236324
Ensembl biotype	lncRNA
Entrez	105378078
RNAcentral	URS00026A2508 — lncRNA, 468 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000446768

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446768 — 2 exons

Exon	Start	End
ENSE00001674092	157885114	157885391
ENSE00004057025	157892693	157892906

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 83.64.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	83.64	gold quality
colonic epithelium	UBERON:0000397	77.31	gold quality
bone marrow	UBERON:0002371	76.43	gold quality
ventricular zone	UBERON:0003053	74.09	gold quality
calcaneal tendon	UBERON:0003701	73.95	gold quality
bone marrow cell	CL:0002092	69.22	silver quality
lymph node	UBERON:0000029	66.13	gold quality
gall bladder	UBERON:0002110	64.72	gold quality
corpus callosum	UBERON:0002336	64.71	gold quality
adrenal tissue	UBERON:0018303	64.15	gold quality
liver	UBERON:0002107	64.13	gold quality
adult mammalian kidney	UBERON:0000082	63.81	gold quality
stromal cell of endometrium	CL:0002255	62.51	gold quality
kidney	UBERON:0002113	61.89	gold quality
tonsil	UBERON:0002372	61.46	silver quality
monocyte	CL:0000576	60.37	gold quality
prefrontal cortex	UBERON:0000451	60.23	gold quality
muscle of leg	UBERON:0001383	58.68	gold quality
endocervix	UBERON:0000458	58.58	gold quality
blood	UBERON:0000178	58.42	gold quality
islet of Langerhans	UBERON:0000006	57.63	gold quality
placenta	UBERON:0001987	57.61	gold quality
gastrocnemius	UBERON:0001388	56.60	gold quality
uterine cervix	UBERON:0000002	56.22	gold quality
stomach	UBERON:0000945	54.72	gold quality
heart left ventricle	UBERON:0002084	54.54	gold quality
endometrium	UBERON:0001295	54.24	gold quality
lung	UBERON:0002048	54.14	gold quality
heart	UBERON:0000948	53.47	gold quality
descending thoracic aorta	UBERON:0002345	52.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.55

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.