SOCAR

Summary

SOCAR (serous ovarian cancer associated RNA, HGNC:54421) is a long non-coding RNA gene on chromosome 2q13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54421
Approved symbol	SOCAR
Name	serous ovarian cancer associated RNA
Location	2q13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240350
Ensembl biotype	lncRNA
Entrez	105373557
RNAcentral	URS00026A25A3 — lncRNA, 594 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000455309, ENST00000627971, ENST00000727980, ENST00000727981

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455309 — 2 exons

Exon	Start	End
ENSE00001733071	111491272	111491662
ENSE00001749517	111510624	111510999

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 85.82.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.82	gold quality
sural nerve	UBERON:0015488	82.98	gold quality
bone marrow cell	CL:0002092	74.20	gold quality
primary visual cortex	UBERON:0002436	73.79	gold quality
bone marrow	UBERON:0002371	70.85	gold quality
lymph node	UBERON:0000029	69.55	gold quality
superior frontal gyrus	UBERON:0002661	68.45	gold quality
skeletal muscle tissue	UBERON:0001134	67.88	gold quality
colonic epithelium	UBERON:0000397	66.57	silver quality
corpus callosum	UBERON:0002336	66.27	gold quality
stromal cell of endometrium	CL:0002255	65.88	gold quality
tonsil	UBERON:0002372	65.77	gold quality
calcaneal tendon	UBERON:0003701	65.62	gold quality
thyroid gland	UBERON:0002046	65.18	gold quality
right coronary artery	UBERON:0001625	65.00	gold quality
left lobe of thyroid gland	UBERON:0001120	64.89	gold quality
ganglionic eminence	UBERON:0004023	64.37	gold quality
right lobe of thyroid gland	UBERON:0001119	63.87	gold quality
blood	UBERON:0000178	63.68	gold quality
islet of Langerhans	UBERON:0000006	63.61	gold quality
granulocyte	CL:0000094	63.49	gold quality
vermiform appendix	UBERON:0001154	62.50	gold quality
adrenal tissue	UBERON:0018303	62.11	gold quality
lower esophagus mucosa	UBERON:0035834	61.71	gold quality
placenta	UBERON:0001987	61.35	gold quality
liver	UBERON:0002107	60.69	gold quality
right lobe of liver	UBERON:0001114	59.57	gold quality
pancreas	UBERON:0001264	59.34	gold quality
leukocyte	CL:0000738	59.27	gold quality
monocyte	CL:0000576	59.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.