SOCS1

gene
On this page

Also known as SOCS-1SSI-1JABTIP3Cish1

Summary

SOCS1 (suppressor of cytokine signaling 1, HGNC:19383) is a protein-coding gene on chromosome 16p13.13, encoding Suppressor of cytokine signaling 1 (O15524). Essential negative regulator of type I and type II interferon (IFN) signaling, as well as that of other cytokines, including IL2, IL4, IL6 and leukemia inhibitory factor (LIF).

This gene encodes a member of the STAT-induced STAT inhibitor (SSI), also known as suppressor of cytokine signaling (SOCS), family. SSI family members are cytokine-inducible negative regulators of cytokine signaling. The expression of this gene can be induced by a subset of cytokines, including IL2, IL3 erythropoietin (EPO), CSF2/GM-CSF, and interferon (IFN)-gamma. The protein encoded by this gene functions downstream of cytokine receptors, and takes part in a negative feedback loop to attenuate cytokine signaling. Knockout studies in mice suggested the role of this gene as a modulator of IFN-gamma action, which is required for normal postnatal growth and survival.

Source: NCBI Gene 8651 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): autoinflammatory syndrome with immunodeficiency (Definitive, ClinGen) — +1 more curated relationship
  • GWAS associations: 25
  • Clinical variants (ClinVar): 63 total — 5 pathogenic, 5 likely-pathogenic
  • Phenotypes (HPO): 22
  • Cancer driver (intOGen): activating (oncogene-like) across 4 cancer types
  • MANE Select transcript: NM_003745

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:19383
Approved symbolSOCS1
Namesuppressor of cytokine signaling 1
Location16p13.13
Locus typegene with protein product
StatusApproved
AliasesSOCS-1, SSI-1, JAB, TIP3, Cish1
Ensembl geneENSG00000185338
Ensembl biotypeprotein_coding
OMIM603597
Entrez8651

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 protein_coding

ENST00000332029, ENST00000644787, ENST00000858080

RefSeq mRNA: 1 — MANE Select: NM_003745 NM_003745

CCDS: CCDS10546

Canonical transcript exons

ENST00000332029 — 2 exons

ExonStartEnd
ENSE000012910361125441711255528
ENSE000013801481125607911256204

Expression profiles

Bgee: expression breadth ubiquitous, 211 present calls, max score 93.34.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 48.3667 / max 7897.1614, expressed in 1748 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
15624048.10951747
1562390.2573131

Top tissues by expression

283 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
type B pancreatic cellCL:000016993.34gold quality
spermCL:000001983.56gold quality
endocervixUBERON:000045882.09gold quality
male germ cellCL:000001581.98gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047380.65gold quality
spleenUBERON:000210680.59gold quality
vermiform appendixUBERON:000115480.21gold quality
superficial temporal arteryUBERON:000161479.51gold quality
granulocyteCL:000009478.56gold quality
lymph nodeUBERON:000002978.51gold quality
metanephros cortexUBERON:001053377.80gold quality
ectocervixUBERON:001224977.67gold quality
bloodUBERON:000017877.46gold quality
small intestine Peyer’s patchUBERON:000345477.16gold quality
lower lobe of lungUBERON:000894977.12gold quality
pituitary glandUBERON:000000777.08gold quality
deciduaUBERON:000245077.06gold quality
adenohypophysisUBERON:000219676.99gold quality
mucosa of transverse colonUBERON:000499176.94gold quality
mucosa of stomachUBERON:000119976.50gold quality
right ovaryUBERON:000211876.27gold quality
thymusUBERON:000237076.08gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099176.06gold quality
body of stomachUBERON:000116175.96gold quality
stromal cell of endometriumCL:000225575.80gold quality
upper lobe of left lungUBERON:000895275.71gold quality
upper lobe of lungUBERON:000894875.58gold quality
right lobe of liverUBERON:000111475.48gold quality
omental fat padUBERON:001041475.45gold quality
caecumUBERON:000115375.44gold quality

Single-cell (SCXA)

Detected in 7 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-HCAD-8yes457.22
E-CURD-88yes37.33
E-MTAB-8410yes14.64
E-ANND-3yes14.08
E-CURD-122yes10.00
E-HCAD-1yes7.57
E-HCAD-30no73.27

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

1 targets.

TargetRegulation
STAT1Repression

Upstream regulators (CollecTRI, top): CEBPB, CSF1R, DNMT1, EGR1, EGR2, ETS1, FOXC1, GFI1, GLI1, GLI2, HIF1A, HOXD1, IFNG, IRF1, IRF6, NFKB, NTS, SP1, SP2, STAT1, STAT3, STAT5A, STAT6, TBX21

miRNA regulators (miRDB)

73 targeting SOCS1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-4673100.0066.641490
HSA-MIR-3163100.0077.238605
HSA-MIR-4510100.0066.602050
HSA-MIR-6127100.0066.762188
HSA-MIR-6129100.0066.462080
HSA-MIR-6130100.0066.692012
HSA-MIR-6133100.0066.482064
HSA-MIR-450099.9972.722367
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-4645-5P99.9865.811284
HSA-LET-7A-5P99.9872.291790
HSA-LET-7B-5P99.9872.311790
HSA-LET-7C-5P99.9872.291790
HSA-LET-7E-5P99.9872.291790
HSA-LET-7F-5P99.9872.561784
HSA-LET-7G-5P99.9872.371784
HSA-LET-7I-5P99.9872.371788
HSA-MIR-98-5P99.9872.331787
HSA-MIR-548AT-5P99.9670.832666
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-LET-7D-5P99.9671.761632
HSA-MIR-445899.9671.641650
HSA-MIR-548J-3P99.9472.614881

Literature-anchored findings (GeneRIF, showing 40)

  • In keratinocytes overexpressing SOCS-1, the IFN-gamma-induced transactivation of an IFN-gamma-responsive reporter gene is markedly inhibited, as are phosphorylation of IFN-gamma R alpha and activation of STAT1 and STAT3. (PMID:12077274)
  • Loss of function of SAOS-1 in collaboration with hematopoietic oncogenes facilitates tumor progression (PMID:12080466)
  • interacts with TRIM8/GERP RING finger protein (PMID:12163497)
  • SOCS1 is frequently silenced by methylation in multiple myeloma, which may impair negative regulation of the Jak/STAT pathway and result in greater responsiveness to cytokines (PMID:12456503)
  • inhibits interferon-gamma-induced activation of human keratinocytes (PMID:12485838)
  • Inactivation of this protein is associated with hypermethylation in human hepatoblastomas. (PMID:12601549)
  • Methylation of the SOCS1 gene, resulting in transcriptional silencing, has been found in 65% of hepatocellular carcinoma cases, correlates with cytogenetic abnormalities, and may play an important role in the development of the cancer. (PMID:12759928)
  • SOCS-1 gene associated with transcriptional silencing in pancreatic ductal neoplasms and may have growth-promoting effects; its methylation may be useful marker (PMID:12865927)
  • Is the SOCS-1 gene silenced by CpG methylation? (PMID:12900355)
  • SOCS1 has a role in mediating Janus kinase 2 ubiquitination/degradation downstream of the prolactin receptor and is regulated by SHP-2 (PMID:14522994)
  • Methylation-mediated silencing of SOCS-1 gene is associated with hepatocellular carcinoma (PMID:14614012)
  • SOCS-1 is faintly expressed in the hippocampus under basal conditions following status epilepticus, corroborating the hypothesis that seizure-induced gp130 cytokines play a direct neuromodulatory role in the hippocampus. (PMID:14614901)
  • Up-regulation of suppressor of cytokine signaling 1 is associated with adult T-cell leukemia (PMID:14630083)
  • Three functional STAT6- interferon-gamma-activated sequence-binding motifs situated close to each other 600 bp upstream of the SOCS-1 transcriptional initiation site mediate IL-4-IL-13-induced SOCS-1 transcription. (PMID:14634100)
  • Methylation of SOCS1 was absent in both AML and ALL patients. Frequent methylation of SHP1, but not SOCS1, may be important in the pathogenesis, but not prognosis, of acute leukaemias. (PMID:14762685)
  • hypermethylated in multiple myeloma. (PMID:14976049)
  • SOCS1 overexpression increased Rb protein levels and suppressed proliferation of cervical cancer cell lines infected with HPV (PMID:15021916)
  • These findings suggested that SOCS-1 may act as a tumor suppressor in at least some colorectal cancers and that SOCS-1 methylation may be a particular phenomenon related to a nearly onset of colorectal cancer. (PMID:15074307)
  • this gene is silenced in a substantial portion of pancreatic cancers through mechanisms that cause methylation in the promoter region (PMID:15121754)
  • HSOCP-1 is involved in cell cycle control and apoptosis (PMID:15166476)
  • Severity of liver fibrosis is strongly correlated with SOCS1 gene methylation. (PMID:15197228)
  • Although the methylation frequency of SOCS-1 is low, the data of Fujitake et al. indicate role of JAK/STAT/SOCS pathway in gastrointestinal tumorigenesis. (PMID:15198092)
  • Aberrant methylation of SOCS-1 may be associated with hepatocarcinogenesis. (PMID:15235874)
  • Our results demonstrate that SOCS-1 and SOCS-3 proteins inhibit IFN-alpha-induced activation of the Jak-STAT pathway and expression of the antiviral proteins 2’,5’-OAS and MxA. (PMID:15240148)
  • SOCS1 and SOCS2 but not SOCS3 suppressed the growth of ovarian and breast cancer cells. (PMID:15361843)
  • SOCS-1 is a progression marker of human melanoma and may downregulate biological responses by endogenous and/or therapeutically administered cytokines. (PMID:15373779)
  • Methylation of the SOCS-1 gene was associated with lymph node metastasis, advanced tumor stage and reduced expression of SOCS-1 in GC tissues. (PMID:15386345)
  • Data link SOCS-1 directly with the proteasome pathway and suggest another function for the SH2 domain of SOCS-1 in the regulation of Jak/STAT signaling. (PMID:15456882)
  • Egr-1 has roles in regulating both the basal and LPS-induced activity of the SOCS-1 promoter (PMID:15545275)
  • The insertion of amino acid exchanges into the kinase inhibitory regions of SOCS-1 demonstrated a requirement of these domains for a proper inhibitory function. (PMID:15589317)
  • Similar to SOCS-1, Tkip peptide binds to the autophosphorylation site of JAK2. (PMID:15688010)
  • IL-28A and IL-29 induced mRNA expression of the antiviral proteins 2’,5’-OAS and MxA was abolished by overexpression of SOCS-1 (PMID:15850793)
  • Suppressor of cytokine signaling-1 expression by infectivity-enhanced adenoviral vector inhibits IL-6-dependent proliferation of multiple myeloma cells. (PMID:16082380)
  • loss of SOCS-1 function either by mutation or by the complete deletion of the gene plays an important role in the dysregulation of JAK/STAT signaling in Karpas1106P and primary mediastinal b-cell lymphoma (PMID:16287070)
  • Data suggest that SOCS1 functions as a negative regulator in TNF-induced inflammation and activation of c-jun N-terminal kinase in endothelial cells, in part by inducing ASK1 degradation. (PMID:16407264)
  • Results suggest a novel interaction between the SOCS1 and SOCS3 proteins and the FGFR3 signaling pathway. (PMID:16410555)
  • The data is compatible with epigenetic silencing of the SOCS-1 gene and constitutive activation of the JAK-STAT pathway in pituitary adenomas. (PMID:16421738)
  • Hypermethylation of SOCS-1 was found in about one-third of human head and neck squamous cell carcinomas tissues,SOCS-1 methylation status can differentially affect STAT3 activation (PMID:16432158)
  • Mutations of the tumor suppressor gene SOCS-1 in classical Hodgkin lymphoma are frequent and associated with nuclear phospho-STAT5 accumulation (PMID:16532038)
  • The STAT1-SOCS1 pathway regulates the innate immune response via TLR3 signaling in epidermal keratinocytes. (PMID:16628196)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriosocs1aENSDARG00000038095
mus_musculusSocs1ENSMUSG00000038037
rattus_norvegicusSocs1ENSRNOG00000002568
drosophila_melanogasterSocs44AFBGN0033266
drosophila_melanogasterSocs36EFBGN0041184

Paralogs (7): CISH (ENSG00000114737), SOCS2 (ENSG00000120833), SOCS6 (ENSG00000170677), SOCS5 (ENSG00000171150), SOCS4 (ENSG00000180008), SOCS3 (ENSG00000184557), SOCS7 (ENSG00000274211)

Protein

Protein identifiers

Suppressor of cytokine signaling 1O15524 (reviewed: O15524)

Alternative names: JAK-binding protein, STAT-induced STAT inhibitor 1, Tec-interacting protein 3

All UniProt accessions (2): O15524, Q4JHT5

UniProt curated annotations — full annotation on UniProt →

Function. Essential negative regulator of type I and type II interferon (IFN) signaling, as well as that of other cytokines, including IL2, IL4, IL6 and leukemia inhibitory factor (LIF). Downregulates cytokine signaling by inhibiting the JAK/STAT signaling pathway. Acts by binding to JAK proteins and to IFNGR1 and inhibiting their kinase activity. In vitro, suppresses Tec protein-tyrosine activity. Regulates IFN-gamma (IFNG)-mediated sensory neuron survival. Probable substrate recognition component of an ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Subunit / interactions. Interacts with multiple activated signaling proteins of the tyrosine kinase signaling pathway including JAK family kinases, TEC, KIT, GRB2 and VAV. Binding to JAKs is mediated through the KIR and SH2 domains to a phosphorylated tyrosine residue within the JAK JH1 domain. Binds the SH3 domain of GRB2 via diproline determinants in the N-terminus, and the N-terminal regulatory domain of VAV. Interacts with the Elongin BC complex (ELOB and ELOC). Component of an ECS CBC(SOCS1) E3 ubiquitin-protein ligase complex which contains Elongin BC, CUL5, RBX1 and SOCS1. Interacts (via SH2 domain and SOCS box) with TRIM8. Interacts with AXL, CUL2 and FGFR3. Interacts with INSR. Interacts with TRIM8. Interacts with DCUN1D1. Interacts with IFNGR1.

Subcellular location. Nucleus. Cytoplasmic vesicle.

Tissue specificity. Expressed in all tissues with high expression in spleen, small intestine and peripheral blood leukocytes.

Disease relevance. Autoinflammatory syndrome, familial, with or without immunodeficiency (AISIMD) [MIM:619375] An autosomal dominant, autoinflammatory disorder with incomplete penetrance characterized by autoimmune cytopenia, hemolytic anemia, thrombocytopenia, and lymphadenopathy. Additional variable features may include autoimmune thyroiditis, psoriasis or eczema, nephritis, hepatitis, and symptoms of systemic lupus erythematosus. Immunodeficiency is present in some patients. Disease onset is usually in the first decades of life, although later onset has been reported. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The ESS and SH2 domains are required for JAK phosphotyrosine binding. Further interaction with the KIR domain is necessary for signal and kinase inhibition. The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin ligase complexes. The Elongin BC complex binding domain is also known as BC-box with the consensus [APST]-L-x(3)-C-x(3)-[AILV] and is part of the SOCS box.

Induction. By a subset of cytokines including those belonging to the interferon, interleukin and colony-stimulating factor families.

Pathway. Protein modification; protein ubiquitination.

Similarity. Belongs to the SOCS1 family.

RefSeq proteins (1): NP_003736* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000980SH2Domain
IPR001496SOCS_boxDomain
IPR035861SOCS1_SH2Domain
IPR036036SOCS_box-like_dom_sfHomologous_superfamily
IPR036860SH2_dom_sfHomologous_superfamily

Pfam: PF00017, PF07525

UniProt features (18 total): sequence variant 5, sequence conflict 4, region of interest 4, domain 2, compositionally biased region 2, chain 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O15524-F184.200.68

Function

Pathways and Gene Ontology

Reactome pathways

27 pathways

IDPathway
R-HSA-1266695Interleukin-7 signaling
R-HSA-1433559Regulation of KIT signaling
R-HSA-166058MyD88:MAL(TIRAP) cascade initiated on plasma membrane
R-HSA-6785807Interleukin-4 and Interleukin-13 signaling
R-HSA-877300Interferon gamma signaling
R-HSA-877312Regulation of IFNG signaling
R-HSA-909733Interferon alpha/beta signaling
R-HSA-912694Regulation of IFNA/IFNB signaling
R-HSA-9674555Signaling by CSF3 (G-CSF)
R-HSA-9705462Inactivation of CSF3 (G-CSF) signaling
R-HSA-982772Growth hormone receptor signaling
R-HSA-983168Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-1280218Adaptive Immune System
R-HSA-1433557Signaling by SCF-KIT
R-HSA-162582Signal Transduction
R-HSA-166016Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168249Innate Immune System
R-HSA-168256Immune System
R-HSA-168898Toll-like Receptor Cascades
R-HSA-181438Toll Like Receptor 2 (TLR2) Cascade
R-HSA-449147Signaling by Interleukins
R-HSA-9006934Signaling by Receptor Tyrosine Kinases
R-HSA-913531Interferon Signaling
R-HSA-983169Class I MHC mediated antigen processing & presentation

MSigDB gene sets: 579 (showing top): BROWNE_HCMV_INFECTION_30MIN_DN, GOBP_MYELOID_CELL_DIFFERENTIATION, TGGTGCT_MIR29A_MIR29B_MIR29C, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, WALLACE_PROSTATE_CANCER_RACE_UP, REACTOME_INNATE_IMMUNE_SYSTEM, ZHAN_MULTIPLE_MYELOMA_PR_DN, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION, GOBP_POSITIVE_REGULATION_OF_HEMOPOIESIS, LU_IL4_SIGNALING, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_ACID_CHEMICAL

GO Biological Process (16): regulation of cytokine production (GO:0001817), cell surface receptor signaling pathway via JAK-STAT (GO:0007259), protein ubiquitination (GO:0016567), cytokine-mediated signaling pathway (GO:0019221), macrophage differentiation (GO:0030225), intracellular signal transduction (GO:0035556), positive regulation of CD4-positive, alpha-beta T cell differentiation (GO:0043372), negative regulation of CD8-positive, alpha-beta T cell differentiation (GO:0043377), fat cell differentiation (GO:0045444), positive regulation of regulatory T cell differentiation (GO:0045591), negative regulation of receptor signaling pathway via JAK-STAT (GO:0046426), negative regulation of insulin receptor signaling pathway (GO:0046627), cellular response to amino acid stimulus (GO:0071230), negative regulation of signal transduction (GO:0009968), developmental process (GO:0032502), regulation of receptor signaling pathway via JAK-STAT (GO:0046425)

GO Molecular Function (6): protein kinase inhibitor activity (GO:0004860), cytokine receptor binding (GO:0005126), insulin-like growth factor receptor binding (GO:0005159), kinase inhibitor activity (GO:0019210), protein kinase binding (GO:0019901), protein binding (GO:0005515)

GO Cellular Component (5): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), cytoplasmic vesicle (GO:0031410), nucleus (GO:0005634)

Reactome top-level categories

Rollup of top-15 pathways:

CategoryPathways
Immune System3
Signaling by Interleukins2
Interferon Signaling2
Cytokine Signaling in Immune system2
Toll Like Receptor 2 (TLR2) Cascade2
Signaling by SCF-KIT1
Toll Like Receptor 4 (TLR4) Cascade1
Toll Like Receptor TLR1:TLR2 Cascade1
Toll Like Receptor TLR6:TLR2 Cascade1
Interferon gamma signaling1
Interferon alpha/beta signaling1
Signaling by CSF3 (G-CSF)1
Class I MHC mediated antigen processing & presentation1
Signaling by Receptor Tyrosine Kinases1
Toll-like Receptor Cascades1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure3
intracellular anatomical structure2
signal transduction2
cell surface receptor signaling pathway via JAK-STAT2
signaling receptor binding2
cytoplasm2
cytokine production1
regulation of gene expression1
regulation of multicellular organismal process1
cell surface receptor signaling pathway via STAT1
protein modification by small protein conjugation1
cell surface receptor signaling pathway1
cellular response to cytokine stimulus1
myeloid leukocyte differentiation1
mononuclear cell differentiation1
CD4-positive, alpha-beta T cell differentiation1
regulation of CD4-positive, alpha-beta T cell differentiation1
positive regulation of alpha-beta T cell differentiation1
positive regulation of CD4-positive, alpha-beta T cell activation1
CD8-positive, alpha-beta T cell differentiation1
regulation of CD8-positive, alpha-beta T cell differentiation1
negative regulation of alpha-beta T cell differentiation1
negative regulation of CD8-positive, alpha-beta T cell activation1
cell differentiation1
regulatory T cell differentiation1
positive regulation of T cell differentiation1
regulation of regulatory T cell differentiation1
regulation of receptor signaling pathway via JAK-STAT1
negative regulation of receptor signaling pathway via STAT1
insulin receptor signaling pathway1
negative regulation of signal transduction1
regulation of insulin receptor signaling pathway1
negative regulation of cellular response to insulin stimulus1
response to amino acid1
cellular response to acid chemical1
regulation of signal transduction1
negative regulation of cell communication1
negative regulation of signaling1
negative regulation of response to stimulus1
biological_process1

Protein interactions and networks

STRING

3066 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
SOCS1JAK2O60674994
SOCS1TYK2P29597991
SOCS1JAK1P23458983
SOCS1CUL2Q13617980
SOCS1ELOBQ15370973
SOCS1IFNAR1P17181970
SOCS1CUL5Q93034956
SOCS1TRIM8Q9BZR9936
SOCS1IFNGR1P15260934
SOCS1COMMD1Q8N668932
SOCS1STAT1P42224887
SOCS1TIRAPP58753858
SOCS1IRAK1P51617857
SOCS1ELOCQ15369825
SOCS1JAK3P52333820

IntAct

51 interactions, top by confidence:

ABTypeScore
ELOCSOCS1psi-mi:“MI:0915”(physical association)0.680
SOCS1ELOCpsi-mi:“MI:0915”(physical association)0.680
SOCS1SH3GL1psi-mi:“MI:0915”(physical association)0.560
SOCS1SMAD4psi-mi:“MI:0915”(physical association)0.550
SOCS1SMAD4psi-mi:“MI:2364”(proximity)0.550
SMAD4SOCS1psi-mi:“MI:2364”(proximity)0.550
SMAD4SOCS1psi-mi:“MI:0915”(physical association)0.550
gagSOCS1psi-mi:“MI:0915”(physical association)0.520
SOCS1gagpsi-mi:“MI:0915”(physical association)0.520
COMMD1SOCS1psi-mi:“MI:0915”(physical association)0.520
SOCS1COMMD1psi-mi:“MI:0915”(physical association)0.520
SOCS1PIK3R1psi-mi:“MI:0915”(physical association)0.490
CRKLSOCS1psi-mi:“MI:0915”(physical association)0.490
CRKSOCS1psi-mi:“MI:0915”(physical association)0.490
SOCS1CRKLpsi-mi:“MI:0915”(physical association)0.490
SOCS1CRKpsi-mi:“MI:0915”(physical association)0.490
SOCS1ERBB2psi-mi:“MI:0407”(direct interaction)0.440
SOCS1METpsi-mi:“MI:0407”(direct interaction)0.440
gagSOCS1psi-mi:“MI:0403”(colocalization)0.430
SOCS1RELApsi-mi:“MI:0915”(physical association)0.400
SOCS1JAK2psi-mi:“MI:0915”(physical association)0.370
SOCS1NDUFA4psi-mi:“MI:0914”(association)0.350

BioGRID (318): SOCS1 (Two-hybrid), SOCS1 (Affinity Capture-Western), SOCS1 (Synthetic Growth Defect), SOCS1 (Two-hybrid), SOCS1 (Two-hybrid), PIK3R1 (Two-hybrid), SOCS1 (Affinity Capture-Western), MET (Affinity Capture-Western), MET (Reconstituted Complex), SOCS1 (Affinity Capture-Western), SOCS1 (Affinity Capture-Western), IRS2 (Affinity Capture-Western), Pvrl4 (Affinity Capture-Western), Pvrl3 (Affinity Capture-Western), PVRL1 (Affinity Capture-Western)

ESM2 similar proteins: A0FI79, A1A5B6, A5PJU7, A5PKD8, A8MQ27, D3ZL52, D7PF45, F1SAM7, I3L5V6, O15524, O35716, O60346, O76050, P60827, Q03160, Q08DG4, Q0MW30, Q14451, Q1RMW5, Q2MJR0, Q3UPE3, Q60806, Q6P6N5, Q6SZW1, Q6UKI2, Q6WVG3, Q6ZT52, Q8BNW9, Q8CHE4, Q8N119, Q8N2R8, Q8N4B1, Q8TF61, Q96BM1, Q96CD0, Q96E14, Q96S99, Q9BR09, Q9BYB0, Q9D0S4

Diamond homologs: O00459, O08908, O14508, O14512, O14543, O14544, O15524, O35716, O35717, O35718, O46404, O54928, O55033, O70512, O75159, O88582, O88583, P23726, P23727, P26450, P27986, Q0VC91, Q29RN6, Q2HJ53, Q54RB7, Q5R685, Q5RCM6, Q5RDX2, Q62225, Q63787, Q63788, Q63789, Q64143, Q68AM8, Q7YRV6, Q861R0, Q8UUU2, Q8VHQ2, Q8WXH5, Q90X67

SIGNOR signaling

22 interactions.

AEffectBMechanism
SOCS1“down-regulates quantity by destabilization”JAK2ubiquitination
PTPN6up-regulatesSOCS1binding
SOCS1down-regulatesIFNGR1binding
SOCS1down-regulatesJAK1binding
IRF1“up-regulates quantity by expression”SOCS1“transcriptional regulation”
STAT1“up-regulates quantity by expression”SOCS1“transcriptional regulation”
IFNG“up-regulates quantity by expression”SOCS1“transcriptional regulation”
SOCS1“down-regulates activity”JAK3binding
STAT6“up-regulates quantity by expression”SOCS1“transcriptional regulation”
SOCS1down-regulatesIFNG
SOCS1“down-regulates quantity by repression”STAT1“transcriptional regulation”
CSF1R“up-regulates quantity by expression”SOCS1“transcriptional regulation”
SOCS1down-regulatesProliferation
YES1“up-regulates quantity by stabilization”SOCS1phosphorylation
SOCS1down-regulatesIRAK1binding
SOCS1“down-regulates quantity by destabilization”VAV1binding
SOCS1“up-regulates activity”VCB-Cul2binding
SRC“down-regulates activity”SOCS1phosphorylation
YES1“down-regulates activity”SOCS1phosphorylation
LYN“down-regulates activity”SOCS1phosphorylation
BLK“down-regulates activity”SOCS1phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 25 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Downstream signal transduction582.8×8e-07
Constitutive Signaling by Aberrant PI3K in Cancer633.1×3e-06
PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling729.4×8e-07
PIP3 activates AKT signaling720.3×4e-06
RAF/MAP kinase cascade718.6×6e-06
Diseases of signal transduction by growth factor receptors and second messengers512.3×8e-04
Signaling by Receptor Tyrosine Kinases511.2×1e-03
Infectious disease77.6×6e-04

GO biological processes:

GO termPartnersFoldFDR
phosphatidylinositol 3-kinase/protein kinase B signal transduction655.0×7e-07
epidermal growth factor receptor signaling pathway553.9×7e-06
cytokine-mediated signaling pathway528.4×1e-04
negative regulation of apoptotic process710.6×2e-04
intracellular signal transduction69.9×8e-04
protein ubiquitination59.0×3e-03
positive regulation of gene expression58.4×4e-03

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: activating (oncogene-like) across 4 cancer types — DLBCLNOS, MLYM, NHL, READ.

Clinical variants and AI predictions

ClinVar

63 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic5
Likely pathogenic5
Uncertain significance38
Likely benign3
Benign2

Top pathogenic / likely-pathogenic (10)

Variant IDHGVSClassification
1172797NM_003745.2(SOCS1):c.480_481insGCGGC (p.Met161fs)Pathogenic
2671890NM_003745.2(SOCS1):c.462C>A (p.Tyr154Ter)Pathogenic
4072794NM_003745.2(SOCS1):c.202_203del (p.Thr68fs)Pathogenic
977212NM_003745.2(SOCS1):c.368C>G (p.Pro123Arg)Pathogenic
977214NM_003745.2(SOCS1):c.476_480dup (p.Met161fs)Pathogenic
1013116GRCh37/hg19 16p13.13(chr16:11348700-11349387)x1Likely pathogenic
1120219NM_003745.2(SOCS1):c.192C>G (p.Tyr64Ter)Likely pathogenic
1175882NM_003745.2(SOCS1):c.95C>A (p.Ser32Ter)Likely pathogenic
3068305NM_003745.2(SOCS1):c.454G>T (p.Glu152Ter)Likely pathogenic
3340478NM_003745.2(SOCS1):c.147_153dup (p.Asp52fs)Likely pathogenic

SpliceAI

182 predictions. Top by Δscore:

VariantEffectΔscore
16:11255527:CG:Cacceptor_gain0.9800
16:11255529:C:CCacceptor_gain0.9800
16:11255525:TGCG:Tacceptor_gain0.9700
16:11256073:GCTCA:Gdonor_loss0.9700
16:11256074:CTCA:Cdonor_loss0.9700
16:11256075:TCA:Tdonor_loss0.9700
16:11256076:CA:Cdonor_loss0.9700
16:11255526:GCG:Gacceptor_gain0.9600
16:11255527:CGC:Cacceptor_gain0.9600
16:11255524:GTGCG:Gacceptor_gain0.9500
16:11256078:CCTGG:Cdonor_gain0.9400
16:11255528:GC:Gacceptor_loss0.9200
16:11255530:T:Gacceptor_loss0.9200
16:11256077:A:ACdonor_gain0.9200
16:11256078:C:CCdonor_gain0.9200
16:11255531:G:Cacceptor_loss0.9000
16:11255710:C:CAdonor_gain0.8400
16:11255532:C:CTacceptor_gain0.8300
16:11255130:CG:Cacceptor_gain0.8200
16:11255533:G:Tacceptor_gain0.8200
16:11255613:C:CAdonor_gain0.8200
16:11255643:CGGA:Cdonor_gain0.8000
16:11255644:GGAG:Gdonor_gain0.8000
16:11255688:G:Cdonor_gain0.7900
16:11255723:C:Adonor_gain0.7900
16:11255722:T:TAdonor_gain0.7400
16:11255774:G:Tacceptor_gain0.7400
16:11255646:A:ACdonor_gain0.7300
16:11255707:A:ACdonor_gain0.7100
16:11255708:C:CCdonor_gain0.7100

AlphaMissense

1349 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
16:11255047:G:CF144L1.000
16:11255047:G:TF144L1.000
16:11255049:A:GF144L1.000
16:11255104:G:CS125R1.000
16:11255104:G:TS125R1.000
16:11255106:T:GS125R1.000
16:11255176:G:CF101L1.000
16:11255176:G:TF101L1.000
16:11255177:A:GF101S1.000
16:11255178:A:GF101L1.000
16:11254852:G:CF209L0.999
16:11254852:G:TF209L0.999
16:11254854:A:GF209L0.999
16:11255074:A:CF135L0.999
16:11255074:A:TF135L0.999
16:11255075:A:GF135S0.999
16:11255076:A:GF135L0.999
16:11255131:G:CS116R0.999
16:11255131:G:TS116R0.999
16:11255133:T:GS116R0.999
16:11255135:A:TL115H0.999
16:11255141:A:GF113S0.999
16:11255165:T:AD105V0.999
16:11255169:G:TR104S0.999
16:11255174:A:GL102P0.999
16:11255183:C:AG99V0.999
16:11255242:G:CF79L0.999
16:11255242:G:TF79L0.999
16:11255244:A:GF79L0.999
16:11254858:G:CF207L0.998

dbSNP variants (sampled 300 via entrez): RS1000257037 (16:11256206 G>A), RS1000309354 (16:11256083 C>A,T), RS1000592734 (16:11256967 G>A), RS1000644962 (16:11256837 G>A), RS1001440147 (16:11256734 C>G,T), RS1002272086 (16:11257893 C>G,T), RS1002729209 (16:11257716 G>A), RS1003204094 (16:11258081 A>T), RS1003388713 (16:11254183 CA>C), RS1003388799 (16:11256051 C>G), RS1003439604 (16:11255782 G>A), RS1003910638 (16:11254341 C>A), RS1004405777 (16:11258114 C>A,T), RS1004665149 (16:11257457 A>C), RS1004847464 (16:11254768 A>G,T)

Disease associations

OMIM: gene MIM:603597 | disease phenotypes: MIM:619375, MIM:188030, MIM:205700, MIM:152700, MIM:601744

GenCC curated gene-disease

DiseaseClassificationInheritance
autoinflammatory syndrome with immunodeficiencyStrongAutosomal dominant
autoimmune diseaseLimitedAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
autoinflammatory syndrome with immunodeficiencyDefinitiveAD

Mondo (7): autoinflammatory syndrome with immunodeficiency (MONDO:0800130), diffuse large B-cell lymphoma (MONDO:0018905), autoimmune thrombocytopenic purpura (MONDO:0008558), autoimmune thrombocytopenia (MONDO:0019098), autoimmune hemolytic anemia (MONDO:0020108), systemic lupus erythematosus (MONDO:0007915), autoimmune disease (MONDO:0007179)

Orphanet (5): Diffuse large B-cell lymphoma (Orphanet:544), Immune thrombocytopenia (Orphanet:3002), Autoimmune thrombocytopenia (Orphanet:71203), Autoimmune hemolytic anemia (Orphanet:98375), Systemic lupus erythematosus (Orphanet:536)

HPO phenotypes

22 total (22 of 22 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000099Glomerulonephritis
HP:0001744Splenomegaly
HP:0001973Autoimmune thrombocytopenia
HP:0002205Recurrent respiratory infections
HP:0002240Hepatomegaly
HP:0002608Celiac disease
HP:0002716Lymphadenopathy
HP:0002725Systemic lupus erythematosus
HP:0003493Antinuclear antibody positivity
HP:0003596Middle age onset
HP:0003621Juvenile onset
HP:0004844Coombs-positive hemolytic anemia
HP:0011462Young adult onset
HP:0011463Childhood onset
HP:0012189Hodgkin lymphoma
HP:0020151Anti-dsDNA antibody positivity
HP:0030384Decreased proportion of marginal zone B cells
HP:0030388Decreased class-switched memory B cell proportion
HP:0033028Anti-U1 ribonucleoprotein antibody positivity
HP:0033631Spondylitis
HP:0100646Thyroiditis

GWAS associations

25 associations (top):

StudyTraitp-value
GCST000612_10Celiac disease3.000000e-08
GCST001473_2Crohn’s disease and psoriasis1.000000e-13
GCST001725_27Inflammatory bowel disease2.000000e-16
GCST001958_14Bulimia nervosa2.000000e-06
GCST003129_23Primary biliary cholangitis2.000000e-14
GCST003155_19Systemic lupus erythematosus7.000000e-17
GCST003156_33Systemic lupus erythematosus2.000000e-08
GCST003268_27Psoriasis vulgaris3.000000e-07
GCST003622_40Systemic lupus erythematosus4.000000e-07
GCST003990_3Allergy2.000000e-16
GCST004131_115Inflammatory bowel disease1.000000e-06
GCST004132_39Crohn’s disease1.000000e-07
GCST005212_32Asthma3.000000e-10
GCST005527_32Psoriasis5.000000e-08
GCST005581_11Primary biliary cirrhosis7.000000e-15
GCST005581_12Primary biliary cirrhosis2.000000e-13
GCST005581_13Primary biliary cirrhosis3.000000e-08
GCST005581_35Primary biliary cirrhosis6.000000e-20
GCST005581_36Primary biliary cirrhosis2.000000e-23
GCST006862_9Asthma2.000000e-10
GCST009597_87Multiple sclerosis5.000000e-16
GCST009798_15Asthma2.000000e-33
GCST90002385_74High light scatter reticulocyte count6.000000e-16
GCST90002386_281High light scatter reticulocyte percentage of red cells1.000000e-14
GCST90011899_21Aspartate aminotransferase levels8.000000e-10

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:1001494psoriasis vulgaris
EFO:0007986reticulocyte count
EFO:0004736aspartate aminotransferase measurement

MeSH disease descriptors (4)

DescriptorNameTree numbers
D000744Anemia, Hemolytic, AutoimmuneC15.378.050.141.125; C20.111.175
D001327Autoimmune DiseasesC20.111
D008180Lupus Erythematosus, SystemicC17.300.480; C20.111.590
D016403Lymphoma, Large B-Cell, DiffuseC04.557.386.480.150.585; C15.604.515.569.480.150.585; C20.683.515.761.480.150.585

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

80 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteincreases cleavage, increases expression, decreases expression, increases reaction, decreases reaction4
Estradiolaffects binding, increases expression, decreases reaction, affects cotreatment4
Arsenic Trioxidedecreases expression, decreases methylation, increases expression3
Cisplatinincreases expression, decreases expression, affects expression, decreases response to substance, affects cotreatment3
entinostatincreases expression, affects cotreatment2
(+)-JQ1 compoundincreases expression2
Panobinostataffects cotreatment, increases expression2
Acetaminophendecreases expression, increases expression2
Benzo(a)pyreneincreases expression, increases methylation2
Dexamethasoneincreases expression2
Progesteroneaffects cotreatment, increases expression, decreases expression2
Tetrachlorodibenzodioxindecreases expression2
Valproic Acidincreases expression, increases methylation2
Cyclosporinedecreases expression, decreases methylation2
Cadmium Chlorideincreases expression, decreases expression2
aristolochic acid Iincreases expression1
GSK-J4decreases expression1
TL8-506affects cotreatment, increases expression1
dicrotophosincreases expression1
4-oxoretinoic aciddecreases expression1
urushiolincreases expression1
triphenyl phosphateaffects expression1
propionaldehydeincreases expression1
trichostatin Aincreases expression1
beta-lapachoneincreases expression1
afimoxifeneaffects cotreatment, increases expression, decreases reaction1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
butyraldehydeincreases expression1
S-(1,2-dichlorovinyl)cysteineaffects response to substance, increases expression, affects cotreatment1
pentanalincreases expression1

Cellosaurus cell lines

3 cell lines: 2 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_1821Karpas-1106PCancer cell lineFemale
CVCL_B2Q7Abcam A-549 SOCS1 KOCancer cell lineMale
CVCL_D8EMUbigene BEAS-2B SOCS1 KOTransformed cell lineMale

Clinical trials (associated diseases)

600 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00001658PHASE4COMPLETEDAmoxicillin for the Treatment of Pediatric Autoimmune Disorders Associated With Streptococcal Infections
NCT00820469PHASE4COMPLETEDStudy of the Influence of Plasma Exchange on the Pharmacokinetics of Rituximab
NCT00862693PHASE4UNKNOWNCalcitriol in the Treatment of Immunoglobulin A Nephropathy
NCT01065285PHASE4COMPLETEDVaccination Against Influenza in Autoimmune Diseases
NCT04015596PHASE4TERMINATEDTrial of Naproxen Sodium for the Treatment of OCD in Children With PANDAS
NCT04127747PHASE4UNKNOWNEfficacy of Individualized Rituximab in Maintaining Remission of Moderate and Severe Systemic Lupus Erythematosus
NCT04297592PHASE4ENROLLING_BY_INVITATIONAntibiotic Prophylaxis in High-Risk Arthroplasty Patients
NCT06499233PHASE4RECRUITINGEfficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease
NCT06723548PHASE4NOT_YET_RECRUITINGTelitacicept and Low-dose Steroids in Refractory Myasthenia Gravis
NCT06964269PHASE4RECRUITINGUse of Acthar Gel Single-Dose Pre-Filled SelfJectTM Injector in Patients With Moderate-Severe Keratitis and Autoimmune Disease
NCT00466258PHASE4COMPLETEDLINFOTARGAM: Treatment With Chemotherapy Plus Rituximab and Highly Active Antiretroviral Therapy in Patients With Diffuse Large B Cell Lymphoma and Infection With the Human Immunodeficiency Virus (HIV)
NCT01949818PHASE4UNKNOWNTreatment of Diffuse Large B Cell Lymphoma
NCT02752815PHASE4UNKNOWNReduced Chemotherapy in Low Risk DLBCL
NCT03376958PHASE4COMPLETEDApatinib for Relapsed and Refractory Diffuse Large B Cell Lymphoma
NCT03513601PHASE4UNKNOWNTreatment of Elderly Patients With Diffuse Large B-cell Lymphoma
NCT03579082PHASE4UNKNOWNA Clinical Trial of Decitabine in Relapse and Refractory Diffuse Large B Cell Lymphoma
NCT05108805PHASE4COMPLETEDChimeric Antigen Receptor (CAR) T Cell Therapy With YESCARTA in the Outpatient Setting
NCT05518383PHASE4RECRUITINGB-cell Mature Non-Hodgkin’s Lymphoma Treatment Protocol in Children and Adolescents 2021
NCT00001768PHASE3COMPLETEDTreatment of Childhood Onset Psychiatric Disorders With Intravenous Immunoglobulin (IVIg)
NCT00035308PHASE3COMPLETEDSafety and Efficacy Study of LJP 394 (Abetimus Sodium) to Treat Lupus Kidney Disease
NCT00351377PHASE3COMPLETEDGastrointestinal and Health-related Quality of Life Outcomes in Patients With Autoimmune Diseases Treated With Mycophenolate
NCT00419419PHASE3COMPLETEDPhase III Study of a Topical Gel Formulation for Treatment and Prevention of Raynaud’s Phenomenon
NCT01004432PHASE3COMPLETEDGolimumab in Rheumatoid Arthritis Participants With an Inadequate Response to Etanercept (ENBREL) or Adalimumab (HUMIRA)
NCT01196091PHASE3COMPLETEDA Study of LY2127399 in Participants With Systemic Lupus Erythematosus
NCT01205438PHASE3COMPLETEDA Study of LY2127399 in Participants With Systemic Lupus Erythematosus
NCT01210716PHASE3COMPLETEDEvaluation of Therapeutic Plasma Exchange (TPE) Procedure Using the AMICUS Device
NCT01281969PHASE3COMPLETEDIntravenous Immunoglobulin for PANDAS
NCT01488708PHASE3TERMINATEDOn Open-Label Study in Participants With Systemic Lupus Erythematosus
NCT01601028PHASE3COMPLETEDHydroxychloroquine Treatment of Dry Eyes in Patients With Primary Sjögren’s Syndrome
NCT02263703PHASE3COMPLETEDImmunogenicity of HPV Vaccine in Immunosuppressed Children
NCT03790293PHASE3COMPLETEDClinical and Immunological Long-term Follow-up of Patients With Pemphigus Included in the RITUXIMAB 3 Trial
NCT05069714PHASE3COMPLETEDOne or Two Week Methotrexate Discontinuation on Efficacy of Influenza Vaccination in Rheumatoid Arthritis.
NCT00075478PHASE3COMPLETEDTotal-Body Irradiation With or Without Fludarabine Phosphate Followed By Donor Stem Cell Transplant in Treating Patients With Hematologic Cancer
NCT00355199PHASE3COMPLETEDComparison of HD Chemotherapy Followed by Auto-transplant and R-CHOP in High Risk Patients With DLBCL.
NCT00400478PHASE3COMPLETEDA Multicentre, Randomized Phase III Study of Rituximab as Maintenance Treatment Versus Observation in Patients With Aggressive B-cell Lymphoma: NHL-13
NCT00499018PHASE3UNKNOWNDose Dense Chemotherapy + Rituximab +/-Intensified High Dose Chemoimmunotherapy With Support of Peripheral Autologous Stem Cell in Diffuse Large B-Cell Lymphoma
NCT00790036PHASE3COMPLETEDPhase III Study of RAD001 Adjuvant Therapy in Poor Risk Patients With Diffuse Large B-Cell Lymphoma (DLBCL) of RAD001 Versus Matching Placebo After Patients Have Achieved Complete Response With First-line Rituximab-chemotherapy
NCT00846157PHASE3UNKNOWNBiocell Natural Killer Mixture in Diffuse Large B Cell Lymphoma (DLBCL) Patients
NCT01122472PHASE3COMPLETEDStudy of Lenalidomide Maintenance Versus Placebo in Responding Elderly Patients With DLBCL and Treated With R-CHOP
NCT01148446PHASE3COMPLETEDR-CHOP Versus R-mini-CEOP in Elderly Patients(>65)With DLBCL