SOCS1
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Also known as SOCS-1SSI-1JABTIP3Cish1
Summary
SOCS1 (suppressor of cytokine signaling 1, HGNC:19383) is a protein-coding gene on chromosome 16p13.13, encoding Suppressor of cytokine signaling 1 (O15524). Essential negative regulator of type I and type II interferon (IFN) signaling, as well as that of other cytokines, including IL2, IL4, IL6 and leukemia inhibitory factor (LIF).
This gene encodes a member of the STAT-induced STAT inhibitor (SSI), also known as suppressor of cytokine signaling (SOCS), family. SSI family members are cytokine-inducible negative regulators of cytokine signaling. The expression of this gene can be induced by a subset of cytokines, including IL2, IL3 erythropoietin (EPO), CSF2/GM-CSF, and interferon (IFN)-gamma. The protein encoded by this gene functions downstream of cytokine receptors, and takes part in a negative feedback loop to attenuate cytokine signaling. Knockout studies in mice suggested the role of this gene as a modulator of IFN-gamma action, which is required for normal postnatal growth and survival.
Source: NCBI Gene 8651 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autoinflammatory syndrome with immunodeficiency (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 25
- Clinical variants (ClinVar): 63 total — 5 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 22
- Cancer driver (intOGen): activating (oncogene-like) across 4 cancer types
- MANE Select transcript:
NM_003745
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19383 |
| Approved symbol | SOCS1 |
| Name | suppressor of cytokine signaling 1 |
| Location | 16p13.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SOCS-1, SSI-1, JAB, TIP3, Cish1 |
| Ensembl gene | ENSG00000185338 |
| Ensembl biotype | protein_coding |
| OMIM | 603597 |
| Entrez | 8651 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000332029, ENST00000644787, ENST00000858080
RefSeq mRNA: 1 — MANE Select: NM_003745
NM_003745
CCDS: CCDS10546
Canonical transcript exons
ENST00000332029 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001291036 | 11254417 | 11255528 |
| ENSE00001380148 | 11256079 | 11256204 |
Expression profiles
Bgee: expression breadth ubiquitous, 211 present calls, max score 93.34.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 48.3667 / max 7897.1614, expressed in 1748 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 156240 | 48.1095 | 1747 |
| 156239 | 0.2573 | 131 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| type B pancreatic cell | CL:0000169 | 93.34 | gold quality |
| sperm | CL:0000019 | 83.56 | gold quality |
| endocervix | UBERON:0000458 | 82.09 | gold quality |
| male germ cell | CL:0000015 | 81.98 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.65 | gold quality |
| spleen | UBERON:0002106 | 80.59 | gold quality |
| vermiform appendix | UBERON:0001154 | 80.21 | gold quality |
| superficial temporal artery | UBERON:0001614 | 79.51 | gold quality |
| granulocyte | CL:0000094 | 78.56 | gold quality |
| lymph node | UBERON:0000029 | 78.51 | gold quality |
| metanephros cortex | UBERON:0010533 | 77.80 | gold quality |
| ectocervix | UBERON:0012249 | 77.67 | gold quality |
| blood | UBERON:0000178 | 77.46 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 77.16 | gold quality |
| lower lobe of lung | UBERON:0008949 | 77.12 | gold quality |
| pituitary gland | UBERON:0000007 | 77.08 | gold quality |
| decidua | UBERON:0002450 | 77.06 | gold quality |
| adenohypophysis | UBERON:0002196 | 76.99 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 76.94 | gold quality |
| mucosa of stomach | UBERON:0001199 | 76.50 | gold quality |
| right ovary | UBERON:0002118 | 76.27 | gold quality |
| thymus | UBERON:0002370 | 76.08 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 76.06 | gold quality |
| body of stomach | UBERON:0001161 | 75.96 | gold quality |
| stromal cell of endometrium | CL:0002255 | 75.80 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 75.71 | gold quality |
| upper lobe of lung | UBERON:0008948 | 75.58 | gold quality |
| right lobe of liver | UBERON:0001114 | 75.48 | gold quality |
| omental fat pad | UBERON:0010414 | 75.45 | gold quality |
| caecum | UBERON:0001153 | 75.44 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-8 | yes | 457.22 |
| E-CURD-88 | yes | 37.33 |
| E-MTAB-8410 | yes | 14.64 |
| E-ANND-3 | yes | 14.08 |
| E-CURD-122 | yes | 10.00 |
| E-HCAD-1 | yes | 7.57 |
| E-HCAD-30 | no | 73.27 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| STAT1 | Repression |
Upstream regulators (CollecTRI, top): CEBPB, CSF1R, DNMT1, EGR1, EGR2, ETS1, FOXC1, GFI1, GLI1, GLI2, HIF1A, HOXD1, IFNG, IRF1, IRF6, NFKB, NTS, SP1, SP2, STAT1, STAT3, STAT5A, STAT6, TBX21
miRNA regulators (miRDB)
73 targeting SOCS1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
Literature-anchored findings (GeneRIF, showing 40)
- In keratinocytes overexpressing SOCS-1, the IFN-gamma-induced transactivation of an IFN-gamma-responsive reporter gene is markedly inhibited, as are phosphorylation of IFN-gamma R alpha and activation of STAT1 and STAT3. (PMID:12077274)
- Loss of function of SAOS-1 in collaboration with hematopoietic oncogenes facilitates tumor progression (PMID:12080466)
- interacts with TRIM8/GERP RING finger protein (PMID:12163497)
- SOCS1 is frequently silenced by methylation in multiple myeloma, which may impair negative regulation of the Jak/STAT pathway and result in greater responsiveness to cytokines (PMID:12456503)
- inhibits interferon-gamma-induced activation of human keratinocytes (PMID:12485838)
- Inactivation of this protein is associated with hypermethylation in human hepatoblastomas. (PMID:12601549)
- Methylation of the SOCS1 gene, resulting in transcriptional silencing, has been found in 65% of hepatocellular carcinoma cases, correlates with cytogenetic abnormalities, and may play an important role in the development of the cancer. (PMID:12759928)
- SOCS-1 gene associated with transcriptional silencing in pancreatic ductal neoplasms and may have growth-promoting effects; its methylation may be useful marker (PMID:12865927)
- Is the SOCS-1 gene silenced by CpG methylation? (PMID:12900355)
- SOCS1 has a role in mediating Janus kinase 2 ubiquitination/degradation downstream of the prolactin receptor and is regulated by SHP-2 (PMID:14522994)
- Methylation-mediated silencing of SOCS-1 gene is associated with hepatocellular carcinoma (PMID:14614012)
- SOCS-1 is faintly expressed in the hippocampus under basal conditions following status epilepticus, corroborating the hypothesis that seizure-induced gp130 cytokines play a direct neuromodulatory role in the hippocampus. (PMID:14614901)
- Up-regulation of suppressor of cytokine signaling 1 is associated with adult T-cell leukemia (PMID:14630083)
- Three functional STAT6- interferon-gamma-activated sequence-binding motifs situated close to each other 600 bp upstream of the SOCS-1 transcriptional initiation site mediate IL-4-IL-13-induced SOCS-1 transcription. (PMID:14634100)
- Methylation of SOCS1 was absent in both AML and ALL patients. Frequent methylation of SHP1, but not SOCS1, may be important in the pathogenesis, but not prognosis, of acute leukaemias. (PMID:14762685)
- hypermethylated in multiple myeloma. (PMID:14976049)
- SOCS1 overexpression increased Rb protein levels and suppressed proliferation of cervical cancer cell lines infected with HPV (PMID:15021916)
- These findings suggested that SOCS-1 may act as a tumor suppressor in at least some colorectal cancers and that SOCS-1 methylation may be a particular phenomenon related to a nearly onset of colorectal cancer. (PMID:15074307)
- this gene is silenced in a substantial portion of pancreatic cancers through mechanisms that cause methylation in the promoter region (PMID:15121754)
- HSOCP-1 is involved in cell cycle control and apoptosis (PMID:15166476)
- Severity of liver fibrosis is strongly correlated with SOCS1 gene methylation. (PMID:15197228)
- Although the methylation frequency of SOCS-1 is low, the data of Fujitake et al. indicate role of JAK/STAT/SOCS pathway in gastrointestinal tumorigenesis. (PMID:15198092)
- Aberrant methylation of SOCS-1 may be associated with hepatocarcinogenesis. (PMID:15235874)
- Our results demonstrate that SOCS-1 and SOCS-3 proteins inhibit IFN-alpha-induced activation of the Jak-STAT pathway and expression of the antiviral proteins 2’,5’-OAS and MxA. (PMID:15240148)
- SOCS1 and SOCS2 but not SOCS3 suppressed the growth of ovarian and breast cancer cells. (PMID:15361843)
- SOCS-1 is a progression marker of human melanoma and may downregulate biological responses by endogenous and/or therapeutically administered cytokines. (PMID:15373779)
- Methylation of the SOCS-1 gene was associated with lymph node metastasis, advanced tumor stage and reduced expression of SOCS-1 in GC tissues. (PMID:15386345)
- Data link SOCS-1 directly with the proteasome pathway and suggest another function for the SH2 domain of SOCS-1 in the regulation of Jak/STAT signaling. (PMID:15456882)
- Egr-1 has roles in regulating both the basal and LPS-induced activity of the SOCS-1 promoter (PMID:15545275)
- The insertion of amino acid exchanges into the kinase inhibitory regions of SOCS-1 demonstrated a requirement of these domains for a proper inhibitory function. (PMID:15589317)
- Similar to SOCS-1, Tkip peptide binds to the autophosphorylation site of JAK2. (PMID:15688010)
- IL-28A and IL-29 induced mRNA expression of the antiviral proteins 2’,5’-OAS and MxA was abolished by overexpression of SOCS-1 (PMID:15850793)
- Suppressor of cytokine signaling-1 expression by infectivity-enhanced adenoviral vector inhibits IL-6-dependent proliferation of multiple myeloma cells. (PMID:16082380)
- loss of SOCS-1 function either by mutation or by the complete deletion of the gene plays an important role in the dysregulation of JAK/STAT signaling in Karpas1106P and primary mediastinal b-cell lymphoma (PMID:16287070)
- Data suggest that SOCS1 functions as a negative regulator in TNF-induced inflammation and activation of c-jun N-terminal kinase in endothelial cells, in part by inducing ASK1 degradation. (PMID:16407264)
- Results suggest a novel interaction between the SOCS1 and SOCS3 proteins and the FGFR3 signaling pathway. (PMID:16410555)
- The data is compatible with epigenetic silencing of the SOCS-1 gene and constitutive activation of the JAK-STAT pathway in pituitary adenomas. (PMID:16421738)
- Hypermethylation of SOCS-1 was found in about one-third of human head and neck squamous cell carcinomas tissues,SOCS-1 methylation status can differentially affect STAT3 activation (PMID:16432158)
- Mutations of the tumor suppressor gene SOCS-1 in classical Hodgkin lymphoma are frequent and associated with nuclear phospho-STAT5 accumulation (PMID:16532038)
- The STAT1-SOCS1 pathway regulates the innate immune response via TLR3 signaling in epidermal keratinocytes. (PMID:16628196)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | socs1a | ENSDARG00000038095 |
| mus_musculus | Socs1 | ENSMUSG00000038037 |
| rattus_norvegicus | Socs1 | ENSRNOG00000002568 |
| drosophila_melanogaster | Socs44A | FBGN0033266 |
| drosophila_melanogaster | Socs36E | FBGN0041184 |
Paralogs (7): CISH (ENSG00000114737), SOCS2 (ENSG00000120833), SOCS6 (ENSG00000170677), SOCS5 (ENSG00000171150), SOCS4 (ENSG00000180008), SOCS3 (ENSG00000184557), SOCS7 (ENSG00000274211)
Protein
Protein identifiers
Suppressor of cytokine signaling 1 — O15524 (reviewed: O15524)
Alternative names: JAK-binding protein, STAT-induced STAT inhibitor 1, Tec-interacting protein 3
All UniProt accessions (2): O15524, Q4JHT5
UniProt curated annotations — full annotation on UniProt →
Function. Essential negative regulator of type I and type II interferon (IFN) signaling, as well as that of other cytokines, including IL2, IL4, IL6 and leukemia inhibitory factor (LIF). Downregulates cytokine signaling by inhibiting the JAK/STAT signaling pathway. Acts by binding to JAK proteins and to IFNGR1 and inhibiting their kinase activity. In vitro, suppresses Tec protein-tyrosine activity. Regulates IFN-gamma (IFNG)-mediated sensory neuron survival. Probable substrate recognition component of an ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Subunit / interactions. Interacts with multiple activated signaling proteins of the tyrosine kinase signaling pathway including JAK family kinases, TEC, KIT, GRB2 and VAV. Binding to JAKs is mediated through the KIR and SH2 domains to a phosphorylated tyrosine residue within the JAK JH1 domain. Binds the SH3 domain of GRB2 via diproline determinants in the N-terminus, and the N-terminal regulatory domain of VAV. Interacts with the Elongin BC complex (ELOB and ELOC). Component of an ECS CBC(SOCS1) E3 ubiquitin-protein ligase complex which contains Elongin BC, CUL5, RBX1 and SOCS1. Interacts (via SH2 domain and SOCS box) with TRIM8. Interacts with AXL, CUL2 and FGFR3. Interacts with INSR. Interacts with TRIM8. Interacts with DCUN1D1. Interacts with IFNGR1.
Subcellular location. Nucleus. Cytoplasmic vesicle.
Tissue specificity. Expressed in all tissues with high expression in spleen, small intestine and peripheral blood leukocytes.
Disease relevance. Autoinflammatory syndrome, familial, with or without immunodeficiency (AISIMD) [MIM:619375] An autosomal dominant, autoinflammatory disorder with incomplete penetrance characterized by autoimmune cytopenia, hemolytic anemia, thrombocytopenia, and lymphadenopathy. Additional variable features may include autoimmune thyroiditis, psoriasis or eczema, nephritis, hepatitis, and symptoms of systemic lupus erythematosus. Immunodeficiency is present in some patients. Disease onset is usually in the first decades of life, although later onset has been reported. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The ESS and SH2 domains are required for JAK phosphotyrosine binding. Further interaction with the KIR domain is necessary for signal and kinase inhibition. The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin ligase complexes. The Elongin BC complex binding domain is also known as BC-box with the consensus [APST]-L-x(3)-C-x(3)-[AILV] and is part of the SOCS box.
Induction. By a subset of cytokines including those belonging to the interferon, interleukin and colony-stimulating factor families.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the SOCS1 family.
RefSeq proteins (1): NP_003736* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000980 | SH2 | Domain |
| IPR001496 | SOCS_box | Domain |
| IPR035861 | SOCS1_SH2 | Domain |
| IPR036036 | SOCS_box-like_dom_sf | Homologous_superfamily |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
Pfam: PF00017, PF07525
UniProt features (18 total): sequence variant 5, sequence conflict 4, region of interest 4, domain 2, compositionally biased region 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15524-F1 | 84.20 | 0.68 |
Function
Pathways and Gene Ontology
Reactome pathways
27 pathways
| ID | Pathway |
|---|---|
| R-HSA-1266695 | Interleukin-7 signaling |
| R-HSA-1433559 | Regulation of KIT signaling |
| R-HSA-166058 | MyD88:MAL(TIRAP) cascade initiated on plasma membrane |
| R-HSA-6785807 | Interleukin-4 and Interleukin-13 signaling |
| R-HSA-877300 | Interferon gamma signaling |
| R-HSA-877312 | Regulation of IFNG signaling |
| R-HSA-909733 | Interferon alpha/beta signaling |
| R-HSA-912694 | Regulation of IFNA/IFNB signaling |
| R-HSA-9674555 | Signaling by CSF3 (G-CSF) |
| R-HSA-9705462 | Inactivation of CSF3 (G-CSF) signaling |
| R-HSA-982772 | Growth hormone receptor signaling |
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-1433557 | Signaling by SCF-KIT |
| R-HSA-162582 | Signal Transduction |
| R-HSA-166016 | Toll Like Receptor 4 (TLR4) Cascade |
| R-HSA-168179 | Toll Like Receptor TLR1:TLR2 Cascade |
| R-HSA-168188 | Toll Like Receptor TLR6:TLR2 Cascade |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-168898 | Toll-like Receptor Cascades |
| R-HSA-181438 | Toll Like Receptor 2 (TLR2) Cascade |
| R-HSA-449147 | Signaling by Interleukins |
| R-HSA-9006934 | Signaling by Receptor Tyrosine Kinases |
| R-HSA-913531 | Interferon Signaling |
| R-HSA-983169 | Class I MHC mediated antigen processing & presentation |
MSigDB gene sets: 579 (showing top):
BROWNE_HCMV_INFECTION_30MIN_DN, GOBP_MYELOID_CELL_DIFFERENTIATION, TGGTGCT_MIR29A_MIR29B_MIR29C, GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NEGATIVE_REGULATION_OF_CELL_DEVELOPMENT, WALLACE_PROSTATE_CANCER_RACE_UP, REACTOME_INNATE_IMMUNE_SYSTEM, ZHAN_MULTIPLE_MYELOMA_PR_DN, GOBP_REGULATION_OF_ALPHA_BETA_T_CELL_ACTIVATION, GOBP_POSITIVE_REGULATION_OF_HEMOPOIESIS, LU_IL4_SIGNALING, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_ACID_CHEMICAL
GO Biological Process (16): regulation of cytokine production (GO:0001817), cell surface receptor signaling pathway via JAK-STAT (GO:0007259), protein ubiquitination (GO:0016567), cytokine-mediated signaling pathway (GO:0019221), macrophage differentiation (GO:0030225), intracellular signal transduction (GO:0035556), positive regulation of CD4-positive, alpha-beta T cell differentiation (GO:0043372), negative regulation of CD8-positive, alpha-beta T cell differentiation (GO:0043377), fat cell differentiation (GO:0045444), positive regulation of regulatory T cell differentiation (GO:0045591), negative regulation of receptor signaling pathway via JAK-STAT (GO:0046426), negative regulation of insulin receptor signaling pathway (GO:0046627), cellular response to amino acid stimulus (GO:0071230), negative regulation of signal transduction (GO:0009968), developmental process (GO:0032502), regulation of receptor signaling pathway via JAK-STAT (GO:0046425)
GO Molecular Function (6): protein kinase inhibitor activity (GO:0004860), cytokine receptor binding (GO:0005126), insulin-like growth factor receptor binding (GO:0005159), kinase inhibitor activity (GO:0019210), protein kinase binding (GO:0019901), protein binding (GO:0005515)
GO Cellular Component (5): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), cytosol (GO:0005829), cytoplasmic vesicle (GO:0031410), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-15 pathways:
| Category | Pathways |
|---|---|
| Immune System | 3 |
| Signaling by Interleukins | 2 |
| Interferon Signaling | 2 |
| Cytokine Signaling in Immune system | 2 |
| Toll Like Receptor 2 (TLR2) Cascade | 2 |
| Signaling by SCF-KIT | 1 |
| Toll Like Receptor 4 (TLR4) Cascade | 1 |
| Toll Like Receptor TLR1:TLR2 Cascade | 1 |
| Toll Like Receptor TLR6:TLR2 Cascade | 1 |
| Interferon gamma signaling | 1 |
| Interferon alpha/beta signaling | 1 |
| Signaling by CSF3 (G-CSF) | 1 |
| Class I MHC mediated antigen processing & presentation | 1 |
| Signaling by Receptor Tyrosine Kinases | 1 |
| Toll-like Receptor Cascades | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| intracellular anatomical structure | 2 |
| signal transduction | 2 |
| cell surface receptor signaling pathway via JAK-STAT | 2 |
| signaling receptor binding | 2 |
| cytoplasm | 2 |
| cytokine production | 1 |
| regulation of gene expression | 1 |
| regulation of multicellular organismal process | 1 |
| cell surface receptor signaling pathway via STAT | 1 |
| protein modification by small protein conjugation | 1 |
| cell surface receptor signaling pathway | 1 |
| cellular response to cytokine stimulus | 1 |
| myeloid leukocyte differentiation | 1 |
| mononuclear cell differentiation | 1 |
| CD4-positive, alpha-beta T cell differentiation | 1 |
| regulation of CD4-positive, alpha-beta T cell differentiation | 1 |
| positive regulation of alpha-beta T cell differentiation | 1 |
| positive regulation of CD4-positive, alpha-beta T cell activation | 1 |
| CD8-positive, alpha-beta T cell differentiation | 1 |
| regulation of CD8-positive, alpha-beta T cell differentiation | 1 |
| negative regulation of alpha-beta T cell differentiation | 1 |
| negative regulation of CD8-positive, alpha-beta T cell activation | 1 |
| cell differentiation | 1 |
| regulatory T cell differentiation | 1 |
| positive regulation of T cell differentiation | 1 |
| regulation of regulatory T cell differentiation | 1 |
| regulation of receptor signaling pathway via JAK-STAT | 1 |
| negative regulation of receptor signaling pathway via STAT | 1 |
| insulin receptor signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| regulation of insulin receptor signaling pathway | 1 |
| negative regulation of cellular response to insulin stimulus | 1 |
| response to amino acid | 1 |
| cellular response to acid chemical | 1 |
| regulation of signal transduction | 1 |
| negative regulation of cell communication | 1 |
| negative regulation of signaling | 1 |
| negative regulation of response to stimulus | 1 |
| biological_process | 1 |
Protein interactions and networks
STRING
3066 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SOCS1 | JAK2 | O60674 | 994 |
| SOCS1 | TYK2 | P29597 | 991 |
| SOCS1 | JAK1 | P23458 | 983 |
| SOCS1 | CUL2 | Q13617 | 980 |
| SOCS1 | ELOB | Q15370 | 973 |
| SOCS1 | IFNAR1 | P17181 | 970 |
| SOCS1 | CUL5 | Q93034 | 956 |
| SOCS1 | TRIM8 | Q9BZR9 | 936 |
| SOCS1 | IFNGR1 | P15260 | 934 |
| SOCS1 | COMMD1 | Q8N668 | 932 |
| SOCS1 | STAT1 | P42224 | 887 |
| SOCS1 | TIRAP | P58753 | 858 |
| SOCS1 | IRAK1 | P51617 | 857 |
| SOCS1 | ELOC | Q15369 | 825 |
| SOCS1 | JAK3 | P52333 | 820 |
IntAct
51 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ELOC | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.680 |
| SOCS1 | ELOC | psi-mi:“MI:0915”(physical association) | 0.680 |
| SOCS1 | SH3GL1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS1 | SMAD4 | psi-mi:“MI:0915”(physical association) | 0.550 |
| SOCS1 | SMAD4 | psi-mi:“MI:2364”(proximity) | 0.550 |
| SMAD4 | SOCS1 | psi-mi:“MI:2364”(proximity) | 0.550 |
| SMAD4 | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.550 |
| gag | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| SOCS1 | gag | psi-mi:“MI:0915”(physical association) | 0.520 |
| COMMD1 | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| SOCS1 | COMMD1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| SOCS1 | PIK3R1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| CRKL | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| CRK | SOCS1 | psi-mi:“MI:0915”(physical association) | 0.490 |
| SOCS1 | CRKL | psi-mi:“MI:0915”(physical association) | 0.490 |
| SOCS1 | CRK | psi-mi:“MI:0915”(physical association) | 0.490 |
| SOCS1 | ERBB2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SOCS1 | MET | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| gag | SOCS1 | psi-mi:“MI:0403”(colocalization) | 0.430 |
| SOCS1 | RELA | psi-mi:“MI:0915”(physical association) | 0.400 |
| SOCS1 | JAK2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SOCS1 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (318): SOCS1 (Two-hybrid), SOCS1 (Affinity Capture-Western), SOCS1 (Synthetic Growth Defect), SOCS1 (Two-hybrid), SOCS1 (Two-hybrid), PIK3R1 (Two-hybrid), SOCS1 (Affinity Capture-Western), MET (Affinity Capture-Western), MET (Reconstituted Complex), SOCS1 (Affinity Capture-Western), SOCS1 (Affinity Capture-Western), IRS2 (Affinity Capture-Western), Pvrl4 (Affinity Capture-Western), Pvrl3 (Affinity Capture-Western), PVRL1 (Affinity Capture-Western)
ESM2 similar proteins: A0FI79, A1A5B6, A5PJU7, A5PKD8, A8MQ27, D3ZL52, D7PF45, F1SAM7, I3L5V6, O15524, O35716, O60346, O76050, P60827, Q03160, Q08DG4, Q0MW30, Q14451, Q1RMW5, Q2MJR0, Q3UPE3, Q60806, Q6P6N5, Q6SZW1, Q6UKI2, Q6WVG3, Q6ZT52, Q8BNW9, Q8CHE4, Q8N119, Q8N2R8, Q8N4B1, Q8TF61, Q96BM1, Q96CD0, Q96E14, Q96S99, Q9BR09, Q9BYB0, Q9D0S4
Diamond homologs: O00459, O08908, O14508, O14512, O14543, O14544, O15524, O35716, O35717, O35718, O46404, O54928, O55033, O70512, O75159, O88582, O88583, P23726, P23727, P26450, P27986, Q0VC91, Q29RN6, Q2HJ53, Q54RB7, Q5R685, Q5RCM6, Q5RDX2, Q62225, Q63787, Q63788, Q63789, Q64143, Q68AM8, Q7YRV6, Q861R0, Q8UUU2, Q8VHQ2, Q8WXH5, Q90X67
SIGNOR signaling
22 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SOCS1 | “down-regulates quantity by destabilization” | JAK2 | ubiquitination |
| PTPN6 | up-regulates | SOCS1 | binding |
| SOCS1 | down-regulates | IFNGR1 | binding |
| SOCS1 | down-regulates | JAK1 | binding |
| IRF1 | “up-regulates quantity by expression” | SOCS1 | “transcriptional regulation” |
| STAT1 | “up-regulates quantity by expression” | SOCS1 | “transcriptional regulation” |
| IFNG | “up-regulates quantity by expression” | SOCS1 | “transcriptional regulation” |
| SOCS1 | “down-regulates activity” | JAK3 | binding |
| STAT6 | “up-regulates quantity by expression” | SOCS1 | “transcriptional regulation” |
| SOCS1 | down-regulates | IFNG | |
| SOCS1 | “down-regulates quantity by repression” | STAT1 | “transcriptional regulation” |
| CSF1R | “up-regulates quantity by expression” | SOCS1 | “transcriptional regulation” |
| SOCS1 | down-regulates | Proliferation | |
| YES1 | “up-regulates quantity by stabilization” | SOCS1 | phosphorylation |
| SOCS1 | down-regulates | IRAK1 | binding |
| SOCS1 | “down-regulates quantity by destabilization” | VAV1 | binding |
| SOCS1 | “up-regulates activity” | VCB-Cul2 | binding |
| SRC | “down-regulates activity” | SOCS1 | phosphorylation |
| YES1 | “down-regulates activity” | SOCS1 | phosphorylation |
| LYN | “down-regulates activity” | SOCS1 | phosphorylation |
| BLK | “down-regulates activity” | SOCS1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 25 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Downstream signal transduction | 5 | 82.8× | 8e-07 |
| Constitutive Signaling by Aberrant PI3K in Cancer | 6 | 33.1× | 3e-06 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 7 | 29.4× | 8e-07 |
| PIP3 activates AKT signaling | 7 | 20.3× | 4e-06 |
| RAF/MAP kinase cascade | 7 | 18.6× | 6e-06 |
| Diseases of signal transduction by growth factor receptors and second messengers | 5 | 12.3× | 8e-04 |
| Signaling by Receptor Tyrosine Kinases | 5 | 11.2× | 1e-03 |
| Infectious disease | 7 | 7.6× | 6e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 6 | 55.0× | 7e-07 |
| epidermal growth factor receptor signaling pathway | 5 | 53.9× | 7e-06 |
| cytokine-mediated signaling pathway | 5 | 28.4× | 1e-04 |
| negative regulation of apoptotic process | 7 | 10.6× | 2e-04 |
| intracellular signal transduction | 6 | 9.9× | 8e-04 |
| protein ubiquitination | 5 | 9.0× | 3e-03 |
| positive regulation of gene expression | 5 | 8.4× | 4e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 4 cancer types — DLBCLNOS, MLYM, NHL, READ.
Clinical variants and AI predictions
ClinVar
63 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 5 |
| Likely pathogenic | 5 |
| Uncertain significance | 38 |
| Likely benign | 3 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (10)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1172797 | NM_003745.2(SOCS1):c.480_481insGCGGC (p.Met161fs) | Pathogenic |
| 2671890 | NM_003745.2(SOCS1):c.462C>A (p.Tyr154Ter) | Pathogenic |
| 4072794 | NM_003745.2(SOCS1):c.202_203del (p.Thr68fs) | Pathogenic |
| 977212 | NM_003745.2(SOCS1):c.368C>G (p.Pro123Arg) | Pathogenic |
| 977214 | NM_003745.2(SOCS1):c.476_480dup (p.Met161fs) | Pathogenic |
| 1013116 | GRCh37/hg19 16p13.13(chr16:11348700-11349387)x1 | Likely pathogenic |
| 1120219 | NM_003745.2(SOCS1):c.192C>G (p.Tyr64Ter) | Likely pathogenic |
| 1175882 | NM_003745.2(SOCS1):c.95C>A (p.Ser32Ter) | Likely pathogenic |
| 3068305 | NM_003745.2(SOCS1):c.454G>T (p.Glu152Ter) | Likely pathogenic |
| 3340478 | NM_003745.2(SOCS1):c.147_153dup (p.Asp52fs) | Likely pathogenic |
SpliceAI
182 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:11255527:CG:C | acceptor_gain | 0.9800 |
| 16:11255529:C:CC | acceptor_gain | 0.9800 |
| 16:11255525:TGCG:T | acceptor_gain | 0.9700 |
| 16:11256073:GCTCA:G | donor_loss | 0.9700 |
| 16:11256074:CTCA:C | donor_loss | 0.9700 |
| 16:11256075:TCA:T | donor_loss | 0.9700 |
| 16:11256076:CA:C | donor_loss | 0.9700 |
| 16:11255526:GCG:G | acceptor_gain | 0.9600 |
| 16:11255527:CGC:C | acceptor_gain | 0.9600 |
| 16:11255524:GTGCG:G | acceptor_gain | 0.9500 |
| 16:11256078:CCTGG:C | donor_gain | 0.9400 |
| 16:11255528:GC:G | acceptor_loss | 0.9200 |
| 16:11255530:T:G | acceptor_loss | 0.9200 |
| 16:11256077:A:AC | donor_gain | 0.9200 |
| 16:11256078:C:CC | donor_gain | 0.9200 |
| 16:11255531:G:C | acceptor_loss | 0.9000 |
| 16:11255710:C:CA | donor_gain | 0.8400 |
| 16:11255532:C:CT | acceptor_gain | 0.8300 |
| 16:11255130:CG:C | acceptor_gain | 0.8200 |
| 16:11255533:G:T | acceptor_gain | 0.8200 |
| 16:11255613:C:CA | donor_gain | 0.8200 |
| 16:11255643:CGGA:C | donor_gain | 0.8000 |
| 16:11255644:GGAG:G | donor_gain | 0.8000 |
| 16:11255688:G:C | donor_gain | 0.7900 |
| 16:11255723:C:A | donor_gain | 0.7900 |
| 16:11255722:T:TA | donor_gain | 0.7400 |
| 16:11255774:G:T | acceptor_gain | 0.7400 |
| 16:11255646:A:AC | donor_gain | 0.7300 |
| 16:11255707:A:AC | donor_gain | 0.7100 |
| 16:11255708:C:CC | donor_gain | 0.7100 |
AlphaMissense
1349 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:11255047:G:C | F144L | 1.000 |
| 16:11255047:G:T | F144L | 1.000 |
| 16:11255049:A:G | F144L | 1.000 |
| 16:11255104:G:C | S125R | 1.000 |
| 16:11255104:G:T | S125R | 1.000 |
| 16:11255106:T:G | S125R | 1.000 |
| 16:11255176:G:C | F101L | 1.000 |
| 16:11255176:G:T | F101L | 1.000 |
| 16:11255177:A:G | F101S | 1.000 |
| 16:11255178:A:G | F101L | 1.000 |
| 16:11254852:G:C | F209L | 0.999 |
| 16:11254852:G:T | F209L | 0.999 |
| 16:11254854:A:G | F209L | 0.999 |
| 16:11255074:A:C | F135L | 0.999 |
| 16:11255074:A:T | F135L | 0.999 |
| 16:11255075:A:G | F135S | 0.999 |
| 16:11255076:A:G | F135L | 0.999 |
| 16:11255131:G:C | S116R | 0.999 |
| 16:11255131:G:T | S116R | 0.999 |
| 16:11255133:T:G | S116R | 0.999 |
| 16:11255135:A:T | L115H | 0.999 |
| 16:11255141:A:G | F113S | 0.999 |
| 16:11255165:T:A | D105V | 0.999 |
| 16:11255169:G:T | R104S | 0.999 |
| 16:11255174:A:G | L102P | 0.999 |
| 16:11255183:C:A | G99V | 0.999 |
| 16:11255242:G:C | F79L | 0.999 |
| 16:11255242:G:T | F79L | 0.999 |
| 16:11255244:A:G | F79L | 0.999 |
| 16:11254858:G:C | F207L | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000257037 (16:11256206 G>A), RS1000309354 (16:11256083 C>A,T), RS1000592734 (16:11256967 G>A), RS1000644962 (16:11256837 G>A), RS1001440147 (16:11256734 C>G,T), RS1002272086 (16:11257893 C>G,T), RS1002729209 (16:11257716 G>A), RS1003204094 (16:11258081 A>T), RS1003388713 (16:11254183 CA>C), RS1003388799 (16:11256051 C>G), RS1003439604 (16:11255782 G>A), RS1003910638 (16:11254341 C>A), RS1004405777 (16:11258114 C>A,T), RS1004665149 (16:11257457 A>C), RS1004847464 (16:11254768 A>G,T)
Disease associations
OMIM: gene MIM:603597 | disease phenotypes: MIM:619375, MIM:188030, MIM:205700, MIM:152700, MIM:601744
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autoinflammatory syndrome with immunodeficiency | Strong | Autosomal dominant |
| autoimmune disease | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| autoinflammatory syndrome with immunodeficiency | Definitive | AD |
Mondo (7): autoinflammatory syndrome with immunodeficiency (MONDO:0800130), diffuse large B-cell lymphoma (MONDO:0018905), autoimmune thrombocytopenic purpura (MONDO:0008558), autoimmune thrombocytopenia (MONDO:0019098), autoimmune hemolytic anemia (MONDO:0020108), systemic lupus erythematosus (MONDO:0007915), autoimmune disease (MONDO:0007179)
Orphanet (5): Diffuse large B-cell lymphoma (Orphanet:544), Immune thrombocytopenia (Orphanet:3002), Autoimmune thrombocytopenia (Orphanet:71203), Autoimmune hemolytic anemia (Orphanet:98375), Systemic lupus erythematosus (Orphanet:536)
HPO phenotypes
22 total (22 of 22 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000099 | Glomerulonephritis |
| HP:0001744 | Splenomegaly |
| HP:0001973 | Autoimmune thrombocytopenia |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002240 | Hepatomegaly |
| HP:0002608 | Celiac disease |
| HP:0002716 | Lymphadenopathy |
| HP:0002725 | Systemic lupus erythematosus |
| HP:0003493 | Antinuclear antibody positivity |
| HP:0003596 | Middle age onset |
| HP:0003621 | Juvenile onset |
| HP:0004844 | Coombs-positive hemolytic anemia |
| HP:0011462 | Young adult onset |
| HP:0011463 | Childhood onset |
| HP:0012189 | Hodgkin lymphoma |
| HP:0020151 | Anti-dsDNA antibody positivity |
| HP:0030384 | Decreased proportion of marginal zone B cells |
| HP:0030388 | Decreased class-switched memory B cell proportion |
| HP:0033028 | Anti-U1 ribonucleoprotein antibody positivity |
| HP:0033631 | Spondylitis |
| HP:0100646 | Thyroiditis |
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000612_10 | Celiac disease | 3.000000e-08 |
| GCST001473_2 | Crohn’s disease and psoriasis | 1.000000e-13 |
| GCST001725_27 | Inflammatory bowel disease | 2.000000e-16 |
| GCST001958_14 | Bulimia nervosa | 2.000000e-06 |
| GCST003129_23 | Primary biliary cholangitis | 2.000000e-14 |
| GCST003155_19 | Systemic lupus erythematosus | 7.000000e-17 |
| GCST003156_33 | Systemic lupus erythematosus | 2.000000e-08 |
| GCST003268_27 | Psoriasis vulgaris | 3.000000e-07 |
| GCST003622_40 | Systemic lupus erythematosus | 4.000000e-07 |
| GCST003990_3 | Allergy | 2.000000e-16 |
| GCST004131_115 | Inflammatory bowel disease | 1.000000e-06 |
| GCST004132_39 | Crohn’s disease | 1.000000e-07 |
| GCST005212_32 | Asthma | 3.000000e-10 |
| GCST005527_32 | Psoriasis | 5.000000e-08 |
| GCST005581_11 | Primary biliary cirrhosis | 7.000000e-15 |
| GCST005581_12 | Primary biliary cirrhosis | 2.000000e-13 |
| GCST005581_13 | Primary biliary cirrhosis | 3.000000e-08 |
| GCST005581_35 | Primary biliary cirrhosis | 6.000000e-20 |
| GCST005581_36 | Primary biliary cirrhosis | 2.000000e-23 |
| GCST006862_9 | Asthma | 2.000000e-10 |
| GCST009597_87 | Multiple sclerosis | 5.000000e-16 |
| GCST009798_15 | Asthma | 2.000000e-33 |
| GCST90002385_74 | High light scatter reticulocyte count | 6.000000e-16 |
| GCST90002386_281 | High light scatter reticulocyte percentage of red cells | 1.000000e-14 |
| GCST90011899_21 | Aspartate aminotransferase levels | 8.000000e-10 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001494 | psoriasis vulgaris |
| EFO:0007986 | reticulocyte count |
| EFO:0004736 | aspartate aminotransferase measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000744 | Anemia, Hemolytic, Autoimmune | C15.378.050.141.125; C20.111.175 |
| D001327 | Autoimmune Diseases | C20.111 |
| D008180 | Lupus Erythematosus, Systemic | C17.300.480; C20.111.590 |
| D016403 | Lymphoma, Large B-Cell, Diffuse | C04.557.386.480.150.585; C15.604.515.569.480.150.585; C20.683.515.761.480.150.585 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
80 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases cleavage, increases expression, decreases expression, increases reaction, decreases reaction | 4 |
| Estradiol | affects binding, increases expression, decreases reaction, affects cotreatment | 4 |
| Arsenic Trioxide | decreases expression, decreases methylation, increases expression | 3 |
| Cisplatin | increases expression, decreases expression, affects expression, decreases response to substance, affects cotreatment | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| (+)-JQ1 compound | increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Dexamethasone | increases expression | 2 |
| Progesterone | affects cotreatment, increases expression, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Valproic Acid | increases expression, increases methylation | 2 |
| Cyclosporine | decreases expression, decreases methylation | 2 |
| Cadmium Chloride | increases expression, decreases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| TL8-506 | affects cotreatment, increases expression | 1 |
| dicrotophos | increases expression | 1 |
| 4-oxoretinoic acid | decreases expression | 1 |
| urushiol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| afimoxifene | affects cotreatment, increases expression, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| pentanal | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1821 | Karpas-1106P | Cancer cell line | Female |
| CVCL_B2Q7 | Abcam A-549 SOCS1 KO | Cancer cell line | Male |
| CVCL_D8EM | Ubigene BEAS-2B SOCS1 KO | Transformed cell line | Male |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00001658 | PHASE4 | COMPLETED | Amoxicillin for the Treatment of Pediatric Autoimmune Disorders Associated With Streptococcal Infections |
| NCT00820469 | PHASE4 | COMPLETED | Study of the Influence of Plasma Exchange on the Pharmacokinetics of Rituximab |
| NCT00862693 | PHASE4 | UNKNOWN | Calcitriol in the Treatment of Immunoglobulin A Nephropathy |
| NCT01065285 | PHASE4 | COMPLETED | Vaccination Against Influenza in Autoimmune Diseases |
| NCT04015596 | PHASE4 | TERMINATED | Trial of Naproxen Sodium for the Treatment of OCD in Children With PANDAS |
| NCT04127747 | PHASE4 | UNKNOWN | Efficacy of Individualized Rituximab in Maintaining Remission of Moderate and Severe Systemic Lupus Erythematosus |
| NCT04297592 | PHASE4 | ENROLLING_BY_INVITATION | Antibiotic Prophylaxis in High-Risk Arthroplasty Patients |
| NCT06499233 | PHASE4 | RECRUITING | Efficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease |
| NCT06723548 | PHASE4 | NOT_YET_RECRUITING | Telitacicept and Low-dose Steroids in Refractory Myasthenia Gravis |
| NCT06964269 | PHASE4 | RECRUITING | Use of Acthar Gel Single-Dose Pre-Filled SelfJectTM Injector in Patients With Moderate-Severe Keratitis and Autoimmune Disease |
| NCT00466258 | PHASE4 | COMPLETED | LINFOTARGAM: Treatment With Chemotherapy Plus Rituximab and Highly Active Antiretroviral Therapy in Patients With Diffuse Large B Cell Lymphoma and Infection With the Human Immunodeficiency Virus (HIV) |
| NCT01949818 | PHASE4 | UNKNOWN | Treatment of Diffuse Large B Cell Lymphoma |
| NCT02752815 | PHASE4 | UNKNOWN | Reduced Chemotherapy in Low Risk DLBCL |
| NCT03376958 | PHASE4 | COMPLETED | Apatinib for Relapsed and Refractory Diffuse Large B Cell Lymphoma |
| NCT03513601 | PHASE4 | UNKNOWN | Treatment of Elderly Patients With Diffuse Large B-cell Lymphoma |
| NCT03579082 | PHASE4 | UNKNOWN | A Clinical Trial of Decitabine in Relapse and Refractory Diffuse Large B Cell Lymphoma |
| NCT05108805 | PHASE4 | COMPLETED | Chimeric Antigen Receptor (CAR) T Cell Therapy With YESCARTA in the Outpatient Setting |
| NCT05518383 | PHASE4 | RECRUITING | B-cell Mature Non-Hodgkin’s Lymphoma Treatment Protocol in Children and Adolescents 2021 |
| NCT00001768 | PHASE3 | COMPLETED | Treatment of Childhood Onset Psychiatric Disorders With Intravenous Immunoglobulin (IVIg) |
| NCT00035308 | PHASE3 | COMPLETED | Safety and Efficacy Study of LJP 394 (Abetimus Sodium) to Treat Lupus Kidney Disease |
| NCT00351377 | PHASE3 | COMPLETED | Gastrointestinal and Health-related Quality of Life Outcomes in Patients With Autoimmune Diseases Treated With Mycophenolate |
| NCT00419419 | PHASE3 | COMPLETED | Phase III Study of a Topical Gel Formulation for Treatment and Prevention of Raynaud’s Phenomenon |
| NCT01004432 | PHASE3 | COMPLETED | Golimumab in Rheumatoid Arthritis Participants With an Inadequate Response to Etanercept (ENBREL) or Adalimumab (HUMIRA) |
| NCT01196091 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01205438 | PHASE3 | COMPLETED | A Study of LY2127399 in Participants With Systemic Lupus Erythematosus |
| NCT01210716 | PHASE3 | COMPLETED | Evaluation of Therapeutic Plasma Exchange (TPE) Procedure Using the AMICUS Device |
| NCT01281969 | PHASE3 | COMPLETED | Intravenous Immunoglobulin for PANDAS |
| NCT01488708 | PHASE3 | TERMINATED | On Open-Label Study in Participants With Systemic Lupus Erythematosus |
| NCT01601028 | PHASE3 | COMPLETED | Hydroxychloroquine Treatment of Dry Eyes in Patients With Primary Sjögren’s Syndrome |
| NCT02263703 | PHASE3 | COMPLETED | Immunogenicity of HPV Vaccine in Immunosuppressed Children |
| NCT03790293 | PHASE3 | COMPLETED | Clinical and Immunological Long-term Follow-up of Patients With Pemphigus Included in the RITUXIMAB 3 Trial |
| NCT05069714 | PHASE3 | COMPLETED | One or Two Week Methotrexate Discontinuation on Efficacy of Influenza Vaccination in Rheumatoid Arthritis. |
| NCT00075478 | PHASE3 | COMPLETED | Total-Body Irradiation With or Without Fludarabine Phosphate Followed By Donor Stem Cell Transplant in Treating Patients With Hematologic Cancer |
| NCT00355199 | PHASE3 | COMPLETED | Comparison of HD Chemotherapy Followed by Auto-transplant and R-CHOP in High Risk Patients With DLBCL. |
| NCT00400478 | PHASE3 | COMPLETED | A Multicentre, Randomized Phase III Study of Rituximab as Maintenance Treatment Versus Observation in Patients With Aggressive B-cell Lymphoma: NHL-13 |
| NCT00499018 | PHASE3 | UNKNOWN | Dose Dense Chemotherapy + Rituximab +/-Intensified High Dose Chemoimmunotherapy With Support of Peripheral Autologous Stem Cell in Diffuse Large B-Cell Lymphoma |
| NCT00790036 | PHASE3 | COMPLETED | Phase III Study of RAD001 Adjuvant Therapy in Poor Risk Patients With Diffuse Large B-Cell Lymphoma (DLBCL) of RAD001 Versus Matching Placebo After Patients Have Achieved Complete Response With First-line Rituximab-chemotherapy |
| NCT00846157 | PHASE3 | UNKNOWN | Biocell Natural Killer Mixture in Diffuse Large B Cell Lymphoma (DLBCL) Patients |
| NCT01122472 | PHASE3 | COMPLETED | Study of Lenalidomide Maintenance Versus Placebo in Responding Elderly Patients With DLBCL and Treated With R-CHOP |
| NCT01148446 | PHASE3 | COMPLETED | R-CHOP Versus R-mini-CEOP in Elderly Patients(>65)With DLBCL |
Related Atlas pages
- Associated diseases: autoimmune disease, autoinflammatory syndrome with immunodeficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoimmune disease, autoimmune hemolytic anemia, autoimmune thrombocytopenia, autoimmune thrombocytopenic purpura, autoinflammatory syndrome with immunodeficiency, bulimia nervosa, diffuse large B-cell lymphoma, primary biliary cholangitis, systemic lupus erythematosus