SOCS7
gene geneOn this page
Also known as NAP4NCKAP4
Summary
SOCS7 (suppressor of cytokine signaling 7, HGNC:29846) is a protein-coding gene on chromosome 17q12, encoding Suppressor of cytokine signaling 7 (O14512). Substrate-recognition component of a cullin-5-RING E3 ubiquitin-protein ligase complex (ECS complex, also named CRL5 complex), which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DAB1 and IRS1.
Predicted to enable phosphorylation-dependent protein binding activity; signaling adaptor activity; and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in insulin receptor signaling pathway; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of neuron migration. Predicted to act upstream of or within brain development; fat cell differentiation; and protein ubiquitination. Located in cytosol. Is active in cytoplasm.
Source: NCBI Gene 30837 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 80 total
- MANE Select transcript:
NM_014598
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29846 |
| Approved symbol | SOCS7 |
| Name | suppressor of cytokine signaling 7 |
| Location | 17q12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NAP4, NCKAP4 |
| Ensembl gene | ENSG00000274211 |
| Ensembl biotype | protein_coding |
| OMIM | 608788 |
| Entrez | 30837 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 4 protein_coding, 1 retained_intron
ENST00000612932, ENST00000613678, ENST00000617360, ENST00000617765, ENST00000665913
RefSeq mRNA: 1 — MANE Select: NM_014598
NM_014598
CCDS: CCDS32637
Canonical transcript exons
ENST00000612932 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003717020 | 38361711 | 38361775 |
| ENSE00003721567 | 38351844 | 38353032 |
| ENSE00003727133 | 38365308 | 38365409 |
| ENSE00003728855 | 38395309 | 38395444 |
| ENSE00003731046 | 38367882 | 38368050 |
| ENSE00003732324 | 38377714 | 38377842 |
| ENSE00003736077 | 38366287 | 38366417 |
| ENSE00003744753 | 38364752 | 38364856 |
| ENSE00003750230 | 38395848 | 38395998 |
| ENSE00003752440 | 38399513 | 38405593 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 94.71.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.6314 / max 119.7794, expressed in 1663 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 160477 | 2.5933 | 1122 |
| 160476 | 2.4832 | 1229 |
| 160481 | 0.7103 | 470 |
| 160480 | 0.4301 | 210 |
| 160478 | 0.2165 | 75 |
| 160479 | 0.1423 | 33 |
| 208165 | 0.0556 | 14 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right testis | UBERON:0004534 | 94.71 | gold quality |
| left testis | UBERON:0004533 | 94.67 | gold quality |
| testis | UBERON:0000473 | 93.39 | gold quality |
| cortical plate | UBERON:0005343 | 91.89 | gold quality |
| cerebellum | UBERON:0002037 | 91.65 | gold quality |
| cerebellar cortex | UBERON:0002129 | 91.58 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 91.51 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 90.29 | gold quality |
| ganglionic eminence | UBERON:0004023 | 88.88 | gold quality |
| sural nerve | UBERON:0015488 | 86.83 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.74 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 85.04 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 84.37 | gold quality |
| prefrontal cortex | UBERON:0000451 | 84.17 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.86 | gold quality |
| pancreas | UBERON:0001264 | 83.81 | gold quality |
| gastrocnemius | UBERON:0001388 | 83.58 | gold quality |
| muscle of leg | UBERON:0001383 | 83.48 | gold quality |
| ventricular zone | UBERON:0003053 | 83.10 | gold quality |
| frontal cortex | UBERON:0001870 | 82.70 | gold quality |
| adrenal tissue | UBERON:0018303 | 82.17 | gold quality |
| body of pancreas | UBERON:0001150 | 81.75 | gold quality |
| muscle tissue | UBERON:0002385 | 81.74 | gold quality |
| cerebral cortex | UBERON:0000956 | 81.73 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 81.51 | gold quality |
| brain | UBERON:0000955 | 81.46 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 81.40 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 81.06 | gold quality |
| colonic epithelium | UBERON:0000397 | 80.96 | gold quality |
| primary visual cortex | UBERON:0002436 | 80.43 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ENAD-17 | no | 259.15 |
| E-ANND-3 | no | 1.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
235 targeting SOCS7, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
Literature-anchored findings (GeneRIF, showing 17)
- Taken together, our data indicate that SOCS-7 interacts with vinexin and the actin cytoskeleton. (PMID:15242778)
- Results indicate that SOCS-7 is a dysregulator of prolactin, leptin, and growth hormone signaling and that its mode of action is a variation of SOCS protein inhibition of cytokine-inducible STAT3 and 5-mediated signal transduction. (PMID:15677474)
- data suggest that SOCS7 is a potent regulator of glucose homeostasis and insulin signaling (PMID:16127460)
- Demonstrate connection between septins/SOCS7/NCK signaling and the DNA damage response. (PMID:17803907)
- findings show that PPAR-gamma is involved in the regulation of SOCS-7 expression by hepatitis C virus core protein genotype 3a (PMID:20357037)
- Higher mRNA expression levels of SOCS1, 3, 4 and 7 are significantly associated with earlier tumour stage and better clinical outcome in human breast cancer. (PMID:20433750)
- LNCaP-S17 cells are resistant to exogenous IL-6-induced neuroendocrine differentiation due to increased levels of CIS/SOCS7 that block activation of JAK2-STAT3 pathways. (PMID:22213096)
- The present report describes for the first time associations between common variants in SOCS7 gene and obesity, central obesity, insulin resistance and disorders of lipid metabolism in nondiabetic men from Argentina. (PMID:22397880)
- SOCS7 functioned as an oncogene, the finding that revealed a novel mechanism of carcinogenesis in bladder cancer cells. (PMID:23392170)
- genetic variants in the SOCS7 gene do not impact variation in glucose homeostasis traits and only minimally impact risk of T2DM in the Old Order Amish (PMID:23767996)
- Insulin Like Growth Factor I treatment and SOCS7 loss have synergistically resulted in increased growth and migration of MCF7 and in increased migration of MDA-MB-231 cells. (PMID:24046004)
- This SOCS7 knockdown-attributed effect could be due to a precise anti-PLCg-1 role. (PMID:25162020)
- This study showed that increased protein levels of SOCS-4 and SOCS-7 in Alzheimer’s disease brains. (PMID:25286386)
- Long noncoding RNA UCA1 regulates HCV replication and antiviral response via miR-145-5p/SOCS7/IFN pathway. (PMID:34345210)
- The E3 ubiquitin ligase SOCS-7 reverses immunosuppression via Shc1 signaling in hepatocellular carcinoma. (PMID:35042950)
- Lack of association between SOCS3 and SOCS7 polymorphisms and psoriasis. (PMID:36169255)
- SOCS7-Derived BC-Box Motif Peptide Mediated Cholinergic Differentiation of Human Adipose-Derived Mesenchymal Stem Cells. (PMID:36769102)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | socs7 | ENSDARG00000077018 |
| mus_musculus | Socs7 | ENSMUSG00000038485 |
| rattus_norvegicus | Socs7 | ENSRNOG00000059008 |
| drosophila_melanogaster | Socs16D | FBGN0030869 |
| caenorhabditis_elegans | F39B2.5 | WBGENE00009556 |
Paralogs (7): CISH (ENSG00000114737), SOCS2 (ENSG00000120833), SOCS6 (ENSG00000170677), SOCS5 (ENSG00000171150), SOCS4 (ENSG00000180008), SOCS3 (ENSG00000184557), SOCS1 (ENSG00000185338)
Protein
Protein identifiers
Suppressor of cytokine signaling 7 — O14512 (reviewed: O14512)
Alternative names: Nck, Ash and phospholipase C gamma-binding protein, Nck-associated protein 4
All UniProt accessions (4): O14512, A0A087WZ14, A0A087X1Q5, A0A5F9YLF9
UniProt curated annotations — full annotation on UniProt →
Function. Substrate-recognition component of a cullin-5-RING E3 ubiquitin-protein ligase complex (ECS complex, also named CRL5 complex), which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DAB1 and IRS1. Specifically recognizes and binds phosphorylated proteins via its SH2 domain, promoting their ubiquitination. The ECS(SOCS7) complex acts as a key regulator of reelin signaling by mediating ubiquitination and degradation of phosphorylated DAB1 in the cortical plate of the developing cerebral cortex, thereby regulating neuron positioning during cortex development. Functions in insulin signaling and glucose homeostasis through IRS1 ubiquitination and subsequent proteasomal degradation. Also inhibits prolactin, growth hormone and leptin signaling by preventing STAT3 and STAT5 activation, sequestering them in the cytoplasm and reducing their binding to DNA.
Subunit / interactions. Substrate-recognition component of the ECS(SOCS7) complex, composed of SOCS7, CUL5, ELOB, ELOC and RNF7/RBX2. Interacts, via the third proline-rich region, with the second SH3 domain of the adapter protein NCK1. Also interacts with GRB2, INSR, PLCG1, SORBS3/vinexin, and phosphorylated STAT3 and STAT5. Interacts with SEPT6. Interacts with phosphorylated IRS4 and PIK3R1.
Subcellular location. Cytoplasm. Nucleus. Cell membrane.
Tissue specificity. Expressed in brain and leukocytes. Also in fetal lung fibroblasts and fetal brain.
Domain organisation. The SOCS box domain mediates the interaction with the Elongin BC complex, an adapter module in different E3 ubiquitin ligase complexes.
Induction. By IL6/interleukin-6, prolactin and growth hormone.
Pathway. Protein modification; protein ubiquitination.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O14512-1 | 1 | yes |
| O14512-2 | 2 |
RefSeq proteins (1): NP_055413* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000980 | SH2 | Domain |
| IPR001496 | SOCS_box | Domain |
| IPR035866 | SOCS7_SH2 | Domain |
| IPR036036 | SOCS_box-like_dom_sf | Homologous_superfamily |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
| IPR037346 | SOCS7_SOCS | Domain |
Pfam: PF00017, PF07525
UniProt features (16 total): compositionally biased region 5, region of interest 5, domain 2, chain 1, splice variant 1, mutagenesis site 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O14512-F1 | 55.83 | 0.12 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 425–427 | loss of irs1 ubiquitination and degradation. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 179 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_LAYER_FORMATION_IN_CEREBRAL_CORTEX, GOBP_NEUROGENESIS, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_CELLULAR_RESPONSE_TO_INSULIN_STIMULUS, GOBP_FOREBRAIN_DEVELOPMENT, GOBP_FOREBRAIN_CELL_MIGRATION, MODULE_205, GOBP_CELLULAR_RESPONSE_TO_HORMONE_STIMULUS, FOSTER_TOLERANT_MACROPHAGE_UP, GOBP_RESPONSE_TO_INSULIN, GOBP_TELENCEPHALON_GLIAL_CELL_MIGRATION, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4
GO Biological Process (8): insulin receptor signaling pathway (GO:0008286), negative regulation of signal transduction (GO:0009968), protein ubiquitination (GO:0016567), layer formation in cerebral cortex (GO:0021819), intracellular signal transduction (GO:0035556), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), regulation of neuron migration (GO:2001222), reelin-mediated signaling pathway (GO:0038026)
GO Molecular Function (5): SH3 domain binding (GO:0017124), signaling adaptor activity (GO:0035591), phosphorylation-dependent protein binding (GO:0140031), ubiquitin-like ligase-substrate adaptor activity (GO:1990756), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), Cul5-RING ubiquitin ligase complex (GO:0031466), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| signal transduction | 2 |
| intracellular anatomical structure | 2 |
| cell surface receptor protein tyrosine kinase signaling pathway | 1 |
| cellular response to insulin stimulus | 1 |
| regulation of signal transduction | 1 |
| negative regulation of cell communication | 1 |
| negative regulation of signaling | 1 |
| negative regulation of response to stimulus | 1 |
| protein modification by small protein conjugation | 1 |
| cerebral cortex radial glia-guided migration | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| neuron migration | 1 |
| regulation of cell migration | 1 |
| cell surface receptor signaling pathway | 1 |
| protein domain specific binding | 1 |
| protein-macromolecule adaptor activity | 1 |
| modification-dependent protein binding | 1 |
| enzyme-substrate adaptor activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cullin-RING ubiquitin ligase complex | 1 |
Protein interactions and networks
STRING
708 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SOCS7 | CUL5 | Q93034 | 834 |
| SOCS7 | NCK1 | P16333 | 802 |
| SOCS7 | SEPTIN6 | Q14141 | 785 |
| SOCS7 | SEPTIN7 | Q16181 | 775 |
| SOCS7 | ELOC | Q15369 | 757 |
| SOCS7 | IRS4 | O14654 | 713 |
| SOCS7 | H3BTC1 | H3BTC1 | 713 |
| SOCS7 | RNF7 | Q9UBF6 | 669 |
| SOCS7 | ELOB | Q15370 | 638 |
| SOCS7 | LCK | P06239 | 628 |
| SOCS7 | SEPTIN11 | Q9NVA2 | 574 |
| SOCS7 | SEPTIN8 | Q92599 | 571 |
| SOCS7 | NCK2 | O43639 | 565 |
| SOCS7 | IRS1 | P35568 | 560 |
| SOCS7 | TP53 | P04637 | 536 |
IntAct
64 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CUL5 | SOCS2 | psi-mi:“MI:0914”(association) | 0.880 |
| SOCS7 | SORBS3 | psi-mi:“MI:0915”(physical association) | 0.690 |
| SORBS3 | SOCS7 | psi-mi:“MI:0915”(physical association) | 0.690 |
| SORBS3 | SOCS7 | psi-mi:“MI:0403”(colocalization) | 0.690 |
| SOCS7 | NCK2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| SOCS7 | NCK2 | psi-mi:“MI:0914”(association) | 0.670 |
| CUL5 | SOCS7 | psi-mi:“MI:0914”(association) | 0.640 |
| SOCS7 | EXOSC8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | TNS2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | MDFI | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| SOCS7 | HSPB8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | YES1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | SORBS2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | LENG8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | GAS2L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | NSMF | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | MISP | psi-mi:“MI:0915”(physical association) | 0.560 |
| SOCS7 | GRB2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYSRT1 | SOCS7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RNF7 | SOCS7 | psi-mi:“MI:0914”(association) | 0.530 |
| SOCS7 | ABI1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SOCS7 | SORBS3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN6 | SOCS7 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL5 | DDX3X | psi-mi:“MI:0914”(association) | 0.350 |
| RNF7 | SOCS2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (53): DAB1 (Reconstituted Complex), CUL5 (Affinity Capture-Western), DAB1 (Biochemical Activity), SOCS7 (Affinity Capture-MS), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid), SOCS7 (Two-hybrid)
ESM2 similar proteins: A0A1W2PRP0, A6NCS4, A7Y7W2, O14512, O43638, O57601, O70220, O96004, P07812, P09023, P10085, P10284, P17483, P22091, P24899, P50548, P52954, P52955, P55318, P57100, P63156, P63157, P70447, P79772, P97832, Q02346, Q05917, Q0VCE2, Q12952, Q1XID0, Q28555, Q3I5G5, Q3Y598, Q60688, Q61660, Q63244, Q63250, Q64279, Q64305, Q64731
Diamond homologs: G5ECJ6, O00459, O08908, O14508, O14512, O14544, O35716, O35717, O46404, O88582, P00519, P00520, P00521, P10447, P14234, P15498, P23726, P23727, P26450, P27870, P27986, P42684, P54100, P62993, P62994, Q08012, Q08DN7, Q45FX5, Q4JIM5, Q54RB7, Q5R4J7, Q5R685, Q5RCM6, Q60631, Q62662, Q63787, Q63788, Q63789, Q64143, Q6P6U0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
80 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 69 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
4104 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:38366388:T:C | F388L | 1.000 |
| 17:38366389:T:C | F388S | 1.000 |
| 17:38366389:T:G | F388C | 1.000 |
| 17:38366390:T:A | F388L | 1.000 |
| 17:38366390:T:G | F388L | 1.000 |
| 17:38366397:A:C | S391R | 1.000 |
| 17:38366399:C:A | S391R | 1.000 |
| 17:38366399:C:G | S391R | 1.000 |
| 17:38366401:T:A | L392H | 1.000 |
| 17:38366401:T:C | L392P | 1.000 |
| 17:38366410:T:C | L395S | 1.000 |
| 17:38366410:T:G | L395W | 1.000 |
| 17:38367886:G:A | G399D | 1.000 |
| 17:38367888:T:A | W400R | 1.000 |
| 17:38367888:T:C | W400R | 1.000 |
| 17:38367889:G:C | W400S | 1.000 |
| 17:38367890:G:C | W400C | 1.000 |
| 17:38367890:G:T | W400C | 1.000 |
| 17:38367891:T:C | Y401H | 1.000 |
| 17:38367891:T:G | Y401D | 1.000 |
| 17:38367892:A:G | Y401C | 1.000 |
| 17:38367894:T:A | W402R | 1.000 |
| 17:38367894:T:C | W402R | 1.000 |
| 17:38367895:G:C | W402S | 1.000 |
| 17:38367896:G:C | W402C | 1.000 |
| 17:38367896:G:T | W402C | 1.000 |
| 17:38367897:G:A | G403R | 1.000 |
| 17:38367897:G:C | G403R | 1.000 |
| 17:38367897:G:T | G403W | 1.000 |
| 17:38367898:G:A | G403E | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000023004 (17:38405993 T>A), RS1000121574 (17:38363122 G>A), RS1000172442 (17:38377616 C>T), RS1000177959 (17:38394045 T>G), RS1000197754 (17:38358995 A>G,T), RS1000305162 (17:38369827 G>A), RS1000319158 (17:38376924 A>T), RS1000319239 (17:38375875 A>G), RS1000346629 (17:38357734 A>C,G), RS1000400026 (17:38383729 A>G), RS1000538427 (17:38382016 T>C), RS1000571634 (17:38390563 C>T), RS1000586876 (17:38370812 A>G), RS1000622468 (17:38353732 A>G,T), RS1000663207 (17:38388184 C>T)
Disease associations
OMIM: gene MIM:608788 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| methylparaben | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| resorcinol | decreases expression | 1 |
| mono(carboxy-isooctyl)phthalate | affects expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Cadmium | increases abundance, decreases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Chelating Agents | affects binding, increases expression | 1 |
| Copper | affects binding, increases expression | 1 |
| Diclofenac | affects expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methylcholanthrene | affects binding, increases reaction | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | increases expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Antirheumatic Agents | affects expression | 1 |
| Cadmium Chloride | decreases expression, increases abundance | 1 |
| Simvastatin | increases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Cellosaurus cell lines
4 cell lines: 3 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D8B8 | Ubigene A-549 SOCS7 KO | Cancer cell line | Male |
| CVCL_D8VZ | Ubigene HCT 116 SOCS7 KO | Cancer cell line | Male |
| CVCL_D9SM | Ubigene HEK293 SOCS7 KO | Transformed cell line | Female |
| CVCL_E0PN | Ubigene HeLa SOCS7 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.