SOX7-AS1

Summary

SOX7-AS1 (SOX7 antisense RNA 1, HGNC:58246) is a long non-coding RNA gene on chromosome 8p23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58246
Approved symbol	SOX7-AS1
Name	SOX7 antisense RNA 1
Location	8p23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248896
Ensembl biotype	lncRNA
Entrez	102723313
RNAcentral	URS0000ABD81F — lncRNA, 2796 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000506149, ENST00000519568, ENST00000657150, ENST00000762492

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506149 — 3 exons

Exon	Start	End
ENSE00002034159	10729314	10729630
ENSE00002076816	10764337	10764723
ENSE00002077993	10754202	10754318

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 82.21.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lower esophagus mucosa	UBERON:0035834	82.21	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.58	silver quality
vagina	UBERON:0000996	72.70	gold quality
ectocervix	UBERON:0012249	67.84	gold quality
skeletal muscle tissue	UBERON:0001134	67.67	gold quality
esophagus mucosa	UBERON:0002469	67.65	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.36	gold quality
bone marrow cell	CL:0002092	65.51	silver quality
ventricular zone	UBERON:0003053	65.21	gold quality
uterine cervix	UBERON:0000002	65.07	gold quality
apex of heart	UBERON:0002098	64.99	gold quality
muscle of leg	UBERON:0001383	64.96	gold quality
gastrocnemius	UBERON:0001388	64.95	gold quality
omental fat pad	UBERON:0010414	64.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.36	gold quality
spleen	UBERON:0002106	64.24	gold quality
skin of abdomen	UBERON:0001416	64.23	gold quality
esophagus	UBERON:0001043	64.16	gold quality
cerebellar hemisphere	UBERON:0002245	63.84	gold quality
cerebellar cortex	UBERON:0002129	63.79	gold quality
cerebellum	UBERON:0002037	63.74	gold quality
adipose tissue	UBERON:0001013	63.39	gold quality
cortical plate	UBERON:0005343	63.08	gold quality
heart left ventricle	UBERON:0002084	62.89	gold quality
subcutaneous adipose tissue	UBERON:0002190	62.42	gold quality
upper lobe of left lung	UBERON:0008952	62.31	gold quality
zone of skin	UBERON:0000014	62.22	gold quality
ganglionic eminence	UBERON:0004023	62.03	gold quality
lung	UBERON:0002048	61.97	gold quality
sural nerve	UBERON:0015488	61.42	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.