SPA17

gene
On this page

Also known as SP17CT22

Summary

SPA17 (sperm autoantigenic protein 17, HGNC:11210) is a protein-coding gene on chromosome 11q24.2, encoding Sperm surface protein Sp17 (Q15506). Sperm surface zona pellucida binding protein.

This gene encodes a protein present at the cell surface. The N-terminus has sequence similarity to human cAMP-dependent protein kinase A (PKA) type II alpha regulatory subunit (RIIa) while the C-terminus has an IQ calmodulin-binding motif. The central portion of the protein has carbohydrate binding motifs and likely functions in cell-cell adhesion. The protein was initially characterized by its involvement in the binding of sperm to the zona pellucida of the oocyte. Recent studies indicate that it is also involved in additional cell-cell adhesion functions such as immune cell migration and metastasis. A retrotransposed pseudogene is present on chromosome 10q22.

Source: NCBI Gene 53340 — RefSeq curated summary.

At a glance

  • GWAS associations: 1
  • Clinical variants (ClinVar): 16 total
  • MANE Select transcript: NM_017425

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:11210
Approved symbolSPA17
Namesperm autoantigenic protein 17
Location11q24.2
Locus typegene with protein product
StatusApproved
AliasesSP17, CT22
Ensembl geneENSG00000064199
Ensembl biotypeprotein_coding
OMIM608621
Entrez53340

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 7 protein_coding, 2 protein_coding_CDS_not_defined

ENST00000227135, ENST00000524614, ENST00000529498, ENST00000532692, ENST00000889322, ENST00000889323, ENST00000919291, ENST00000919292, ENST00000919293

RefSeq mRNA: 1 — MANE Select: NM_017425 NM_017425

CCDS: CCDS8450

Canonical transcript exons

ENST00000227135 — 5 exons

ExonStartEnd
ENSE00001014300124673904124673952
ENSE00002166904124694303124697518
ENSE00003490356124681389124681459
ENSE00003505881124675238124675418
ENSE00003615228124691696124691782

Expression profiles

Bgee: expression breadth ubiquitous, 249 present calls, max score 98.69.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.0402 / max 531.8351, expressed in 1727 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter IDTPM avgSamples expressed
11738011.58591710
1173790.3173121
2064840.136958

Top tissues by expression

284 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
bronchial epithelial cellCL:000232898.69gold quality
spermCL:000001998.66gold quality
epithelium of bronchusUBERON:000203198.05gold quality
left testisUBERON:000453397.95gold quality
male germ cellCL:000001597.75gold quality
right testisUBERON:000453497.34gold quality
bronchusUBERON:000218597.19gold quality
adult organismUBERON:000702396.61gold quality
testisUBERON:000047395.46gold quality
olfactory segment of nasal mucosaUBERON:000538693.10gold quality
mucosa of paranasal sinusUBERON:000503093.00gold quality
right uterine tubeUBERON:000130292.42gold quality
caput epididymisUBERON:000435890.09gold quality
choroid plexus epitheliumUBERON:000391189.18gold quality
epithelium of nasopharynxUBERON:000195188.22gold quality
nasal cavity epitheliumUBERON:000538486.94gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047385.53gold quality
corpus epididymisUBERON:000435985.41gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099185.34gold quality
ventricular zoneUBERON:000305382.08gold quality
islet of LangerhansUBERON:000000681.95gold quality
cranial nerve IIUBERON:000094181.64gold quality
nasal cavity mucosaUBERON:000182681.48gold quality
mucosa of transverse colonUBERON:000499178.85gold quality
prefrontal cortexUBERON:000045177.79gold quality
adenohypophysisUBERON:000219677.75gold quality
pituitary glandUBERON:000000777.29gold quality
endometriumUBERON:000129577.02gold quality
right lungUBERON:000216776.05gold quality
secondary oocyteCL:000065575.97gold quality

Single-cell (SCXA)

Detected in 7 experiment(s), a significant marker in 7.

ExperimentMarker?Max mean expression
E-CURD-114yes61.32
E-GEOD-134144yes31.21
E-MTAB-10287yes27.05
E-HCAD-1yes25.60
E-GEOD-130148yes13.34
E-ANND-3yes10.61
E-MTAB-9388yes7.12

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

42 targeting SPA17, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3134100.0066.43777
HSA-MIR-6758-5P100.0066.211470
HSA-MIR-6856-5P100.0065.471298
HSA-MIR-30A-5P100.0076.313233
HSA-MIR-30B-5P100.0076.293248
HSA-MIR-30C-5P100.0076.293248
HSA-MIR-30D-5P100.0076.323233
HSA-MIR-30E-5P100.0076.323242
HSA-MIR-453499.9966.581907
HSA-MIR-3667-3P99.9967.171636
HSA-MIR-808299.9567.271170
HSA-MIR-452599.9464.38675
HSA-MIR-5010-5P99.9464.11705
HSA-MIR-335-3P99.9373.364958
HSA-MIR-568099.9169.833421
HSA-MIR-391999.8769.452489
HSA-MIR-579-3P99.8671.663628
HSA-MIR-10395-5P99.8667.35676
HSA-MIR-664B-3P99.8471.653590
HSA-MIR-5003-5P99.6169.131624
HSA-MIR-6513-3P99.5969.771102
HSA-MIR-141-5P99.5767.86897
HSA-MIR-5004-3P99.5468.271371
HSA-MIR-1212399.5271.792990
HSA-MIR-127599.4767.902749
HSA-MIR-664A-3P99.2271.082696
HSA-MIR-425499.1165.151315
HSA-MIR-316899.0867.751384
HSA-MIR-4764-5P98.8865.53894
HSA-MIR-426098.7865.37848

Literature-anchored findings (GeneRIF, showing 22)

  • Sp17 has different expression patterns in cancer cell lines as compared to normal non-testes tissues and a potential pathogenic role in diseased cells (PMID:12213290)
  • focuses on the characterization of the genomic organization of an intron-containing gene and establishes a new transcription model (PMID:12393185)
  • expression of Sp17, a thought to be gamete-specific protein, in the synoviocytes of 8/8 female rheumatoid arthritis patients (PMID:12739786)
  • identification of a nonapeptide sequence within the Sp17 protein that is predicted to have a high binding affinity for HLA-A1 molecules (PMID:14566839)
  • Sp17 is expressed in the cell nucleus of ovarian neoplasms (PMID:14712480)
  • Sp17 gene expression in myeloma cells is regulated by promoter methylation (PMID:15381930)
  • Overexpression of sperm protein 17 is associated with esophageal cancer (PMID:17230514)
  • in vitro cultured, monoclonal, cytotoxic T lymphocytes (derived either from advanced OC patients or from healthy donors), specific for sperm protein 17, can eradicate human metastatic OC cells. (PMID:18779750)
  • Results suggest a possible role of Sp17 in regulating sperm maturation, capacitation, acrosomal reaction and interactions with the oocyte zona pellucida during the fertilization process. (PMID:19604394)
  • Data show that cisplatin induced decrease in Sp17 levels was due to transcriptional inhibition and cisplatin-resistant cell lines did not show this decrease in Sp17 levels in response to cisplatin treatment. (PMID:19685492)
  • HSp17 plays a role in metastatic disease and resistance of epithelial ovarian carcinoma to chemotherapy (PMID:19744347)
  • Sperm protein 17 is highly expressed in endometrial and cervical cancers. (PMID:20712874)
  • SP17 was expressed in many cancer types with an overall frequency of 12%. SP17 was most frequently expressed in a different set of cancer types than MAGE-A and GAGE antigens and rarely overlapped with these proteins. (PMID:23137323)
  • Sp17 is highly expressed in hepatocellular carcinoma cells (PMID:23923079)
  • NY-ESO-1 and SP17 was not significantly associated with a specific histotype, but high-level GAGE expression was more frequent in squamous cell carcinoma. GAGE expression was demonstrated to be significantly higher in stage II-IIIa than stage I NSCLC. (PMID:24103781)
  • Sp17 and ASP cancer/testis antigens were found in ciliated cells of four ciliated hepatic foregut cysts (CHFCs). Further characterization of Sp17 and ASP in patients with CHFCs may provide significant clues for understanding the molecular mechanisms underlying their predisposition to develop squamous cell carcinomas. (PMID:25600306)
  • SP17/AKAP4/PTTG1 are expressed in both human NSCLC cell lines and primary tumors and can elicit an immunogenic response in lung cancer patients. (PMID:25739119)
  • dendritic cells from human umbilical cord blood modulated for SP17 expression induced antigen-specific anti-tumor immunity against SP17(+) non-small cell lung cancer. (PMID:26300426)
  • Results find that Sp17 is highly expressed in benign, borderline, and low grade malignant serous ovarian neoplasms and can be quantified in serum. Sp17 expression may have diagnostic significance in this subset of patients. (PMID:30309325)
  • data suggests that SPA17, ANXA2, and SERPINA5 may potentially serve as non-invasive protein biomarkers associated with the fertilization process of the spermatozoa in unexplained male infertility (PMID:31336797)
  • Serum Sp17 Autoantibody Serves as a Potential Specific Biomarker in Patients with SAPHO Syndrome. (PMID:33392854)
  • ANXA2, SP17, SERPINA5, PRDX2 genes, and sperm DNA fragmentation differentially represented in male partners of infertile couples with normal and abnormal sperm parameters. (PMID:36177795)

Cross-species orthologs

4 orthologs

OrganismSymbolGene ID
mus_musculusSpa17ENSMUSG00000001948
rattus_norvegicusSpa17ENSRNOG00000010934
drosophila_melanogasteriglFBGN0013467
caenorhabditis_elegansWBGENE00018214

Paralogs (2): GAP43 (ENSG00000172020), RIIAD1 (ENSG00000178796)

Protein

Protein identifiers

Sperm surface protein Sp17Q15506 (reviewed: Q15506)

Alternative names: Cancer/testis antigen 22, Sp17-1, Sperm autoantigenic protein 17

All UniProt accessions (2): Q15506, A0A172Q397

UniProt curated annotations — full annotation on UniProt →

Function. Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.

Subunit / interactions. Homodimer. May interact with ROPN1.

Subcellular location. Membrane.

Tissue specificity. Testis and sperm specific.

RefSeq proteins (1): NP_059121* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000048IQ_motif_EF-hand-BSBinding_site
IPR003117cAMP_dep_PK_reg_su_I/II_a/bDomain
IPR012105Sp17Family
IPR047579DD_CABYR_SP17Domain

Pfam: PF00612, PF02197

UniProt features (5 total): region of interest 2, chain 1, domain 1, compositionally biased region 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
8J07ELECTRON MICROSCOPY4.1

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q15506-F176.980.44

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 188 (showing top): MORF_ITGA2, GOBP_SINGLE_FERTILIZATION, MORF_MSH3, SP3_Q3, MORF_BRCA1, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOCC_CELL_SURFACE, GOBP_MALE_GAMETE_GENERATION, GGGTGGRR_PAX4_03, MORF_RAD51L3, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, MODULE_205, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, MORF_CTSB

GO Biological Process (4): epithelial cilium movement involved in extracellular fluid movement (GO:0003351), spermatogenesis (GO:0007283), single fertilization (GO:0007338), binding of sperm to zona pellucida (GO:0007339)

GO Molecular Function (2): calmodulin binding (GO:0005516), protein binding (GO:0005515)

GO Cellular Component (9): extracellular region (GO:0005576), cytoplasm (GO:0005737), cilium (GO:0005929), external side of plasma membrane (GO:0009897), motile cilium (GO:0031514), sperm fibrous sheath (GO:0035686), neuron projection (GO:0043005), sperm principal piece (GO:0097228), membrane (GO:0016020)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure5
plasma membrane bounded cell projection2
sperm flagellum2
cilium movement1
extracellular transport1
microtubule-based transport1
developmental process involved in reproduction1
male gamete generation1
fertilization1
sperm-egg recognition1
protein binding1
binding1
intracellular anatomical structure1
intraciliary transport particle1
membrane-bounded organelle1
plasma membrane1
cell surface1
side of membrane1
cilium1

Protein interactions and networks

STRING

1422 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
SPA17CABYRO75952945
SPA17AKAP3O75969936
SPA17ROPN1Q9HAT0927
SPA17ROPN1LQ96C74905
SPA17ZPBPQ9BS86863
SPA17ABHD2P08910829
SPA17SAGE1Q9NXZ1815
SPA17GAS2L2Q8NHY3767
SPA17RASL10AQ92737763
SPA17PAGE5Q96GU1720
SPA17MAGEC2Q9UBF1720
SPA17PRKAR2AP13861711
SPA17GAS2L1Q99501695
SPA17RHPN1Q8TCX5682
SPA17GAS2O43903676

IntAct

47 interactions, top by confidence:

ABTypeScore
SPA17MYL6Bpsi-mi:“MI:0915”(physical association)0.830
MYL6BSPA17psi-mi:“MI:0915”(physical association)0.830
ROPN1SPA17psi-mi:“MI:0915”(physical association)0.810
SPA17ROPN1psi-mi:“MI:0915”(physical association)0.810
ROPN1LSPA17psi-mi:“MI:0914”(association)0.740
SPA17ROPN1Lpsi-mi:“MI:0915”(physical association)0.740
SPA17AKAP7psi-mi:“MI:0915”(physical association)0.720
AKAP7SPA17psi-mi:“MI:0915”(physical association)0.720
FBXO44SKP1psi-mi:“MI:0914”(association)0.670
ACTN2SPA17psi-mi:“MI:0915”(physical association)0.560
AKAP7SPA17psi-mi:“MI:0915”(physical association)0.550
FBXO44CUL1psi-mi:“MI:0914”(association)0.530
AKAP14PRKAR2Apsi-mi:“MI:0914”(association)0.530
SPA17EFCAB7psi-mi:“MI:0914”(association)0.350
AKAP14EFCAB7psi-mi:“MI:0914”(association)0.350
CSAG1NAP1L4psi-mi:“MI:0914”(association)0.350

BioGRID (35): SPA17 (Two-hybrid), ROPN1 (Two-hybrid), MYL6B (Two-hybrid), SPA17 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), PRKAR2B (Affinity Capture-MS), MYL6B (Affinity Capture-MS), SEC63 (Affinity Capture-MS), EFCAB7 (Affinity Capture-MS), WDR45B (Affinity Capture-MS), USP33 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), SPA17 (Two-hybrid), SPA17 (Affinity Capture-MS)

ESM2 similar proteins: A0A1B0GV96, A0MZ66, A0MZ67, A2VDA9, A5PJI6, A6NKN8, A8R4Q8, E7F7X0, O14990, O19021, O42932, O62770, O62771, P13505, P36425, P48539, P54866, P63054, P63055, P84086, P84087, P84088, Q04504, Q0P561, Q148C4, Q15506, Q28IH8, Q3UYG8, Q4R615, Q5F3A1, Q5M8L3, Q5R4Q3, Q5ZM33, Q62252, Q62736, Q6DBA5, Q6GNQ4, Q6NWC9, Q6P3G4, Q6PUV4

Diamond homologs: O19021, O62770, O62771, O75952, P00515, P12368, P13861, P36425, Q15506, Q4R3X7, Q62252, Q710D7, Q95230, Q9D424, A0A509AKL0, A5K0N4, O14448, O42794, O59922, O77676, P00514, P00516, P05207, P05987, P07278, P07802, P09456, P0A2T6, P0A2T7, P0ACJ8, P0ACJ9, P0ACK0, P0ACK1, P0C605, P10644, P12367, P12369, P12849, P16905, P30625

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

16 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance12
Likely benign1
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

666 predictions. Top by Δscore:

VariantEffectΔscore
11:124673950:G:GTdonor_gain1.0000
11:124675415:GAGA:Gdonor_gain1.0000
11:124675417:GA:Gdonor_gain1.0000
11:124675419:G:GGdonor_gain1.0000
11:124691686:A:AGacceptor_gain1.0000
11:124691687:T:Gacceptor_gain1.0000
11:124691689:T:TAacceptor_gain1.0000
11:124691691:TCCA:Tacceptor_loss1.0000
11:124691694:A:AGacceptor_gain1.0000
11:124691694:AG:Aacceptor_gain1.0000
11:124691694:AGG:Aacceptor_loss1.0000
11:124691695:G:GGacceptor_gain1.0000
11:124691695:G:GTacceptor_loss1.0000
11:124691695:GG:Gacceptor_gain1.0000
11:124691695:GGA:Gacceptor_gain1.0000
11:124691695:GGAGC:Gacceptor_gain1.0000
11:124691759:G:GTdonor_gain1.0000
11:124691778:TCTTA:Tdonor_gain1.0000
11:124691781:TA:Tdonor_gain1.0000
11:124691783:G:GGdonor_gain1.0000
11:124673949:GGAG:Gdonor_gain0.9900
11:124673950:GAGG:Gdonor_loss0.9900
11:124673951:AGG:Adonor_loss0.9900
11:124673953:G:GAdonor_loss0.9900
11:124673954:T:Adonor_loss0.9900
11:124675416:A:Tdonor_gain0.9900
11:124675601:A:AGacceptor_gain0.9900
11:124675602:T:Gacceptor_gain0.9900
11:124691693:CAGG:Cacceptor_gain0.9900
11:124691694:AGGA:Aacceptor_gain0.9900

AlphaMissense

1009 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:124675376:T:CF38L0.997
11:124675378:T:AF38L0.997
11:124675378:T:GF38L0.997
11:124675347:T:CL28P0.996
11:124675382:G:CA40P0.996
11:124694357:G:CA123P0.996
11:124675323:T:AL20H0.995
11:124675332:T:CL23P0.995
11:124675338:G:CR25P0.995
11:124675380:C:AA39E0.994
11:124675307:G:AG15R0.993
11:124675307:G:CG15R0.993
11:124675358:C:TP32S0.993
11:124675359:C:AP32Q0.993
11:124675368:T:AI35K0.993
11:124675379:G:CA39P0.993
11:124675414:A:CR50S0.993
11:124675414:A:TR50S0.993
11:124675401:T:CL46P0.992
11:124675302:C:AP13Q0.990
11:124675320:T:CL19P0.990
11:124675368:T:GI35R0.990
11:124694367:G:CR126P0.990
11:124675311:T:CF16S0.989
11:124675323:T:CL20P0.989
11:124675388:T:GY42D0.989
11:124694352:T:CI121T0.989
11:124675332:T:AL23Q0.988
11:124675377:T:CF38S0.988
11:124675391:T:CF43L0.988

dbSNP variants (sampled 300 via entrez): RS1000162551 (11:124683734 C>A,T), RS1000215927 (11:124675064 T>G), RS1000272722 (11:124674841 A>T), RS1000297954 (11:124683468 A>C,G), RS1000318835 (11:124688662 A>C), RS1000781082 (11:124682011 G>A), RS1001275698 (11:124673213 C>A), RS1001433754 (11:124694523 T>C), RS1001441458 (11:124687733 C>T), RS1001686527 (11:124675529 G>A), RS1002033360 (11:124692796 G>C), RS1002228744 (11:124675137 G>A), RS1002312429 (11:124680336 C>T), RS1002442365 (11:124678380 G>C), RS1002447472 (11:124686168 G>A,C)

Disease associations

OMIM: gene MIM:608621 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

StudyTraitp-value
GCST006865_13Bipolar disorder6.000000e-06

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 1 entry (VIP=true, CPIC=false)

CTD chemical–gene interactions

41 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects expression, decreases methylation, increases expression5
sodium arseniteincreases abundance, increases expression3
trichostatin Aaffects cotreatment, decreases expression2
Air Pollutantsdecreases expression, increases abundance, increases expression2
Tobacco Smoke Pollutiondecreases expression, affects expression2
Cyclosporineaffects expression, decreases expression2
Particulate Matterincreases abundance, affects cotreatment, decreases expression2
methylmercuric chloridedecreases expression1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
cobaltous chloridedecreases expression1
perfluorooctanoic aciddecreases expression1
manganese chloridedecreases expression1
isobutyl alcoholaffects cotreatment, decreases expression, increases abundance1
CGP 52608affects binding, increases reaction1
corosolic aciddecreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
abrinedecreases expression1
dorsomorphinaffects cotreatment, decreases expression1
bisphenol Sincreases expression1
Sunitinibdecreases expression1
Vorinostatincreases expression1
Leflunomidedecreases expression1
Arsenicincreases abundance, increases expression1
Doxorubicindecreases expression1
Gasolineaffects cotreatment, decreases expression, increases abundance1
Hydrogen Peroxideaffects expression1
Ivermectindecreases expression1
Manganesedecreases expression1
Phenobarbitalaffects expression1
Phenylmercuric Acetateaffects cotreatment, decreases expression1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bipolar disorder