SPA17
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Also known as SP17CT22
Summary
SPA17 (sperm autoantigenic protein 17, HGNC:11210) is a protein-coding gene on chromosome 11q24.2, encoding Sperm surface protein Sp17 (Q15506). Sperm surface zona pellucida binding protein.
This gene encodes a protein present at the cell surface. The N-terminus has sequence similarity to human cAMP-dependent protein kinase A (PKA) type II alpha regulatory subunit (RIIa) while the C-terminus has an IQ calmodulin-binding motif. The central portion of the protein has carbohydrate binding motifs and likely functions in cell-cell adhesion. The protein was initially characterized by its involvement in the binding of sperm to the zona pellucida of the oocyte. Recent studies indicate that it is also involved in additional cell-cell adhesion functions such as immune cell migration and metastasis. A retrotransposed pseudogene is present on chromosome 10q22.
Source: NCBI Gene 53340 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 16 total
- MANE Select transcript:
NM_017425
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11210 |
| Approved symbol | SPA17 |
| Name | sperm autoantigenic protein 17 |
| Location | 11q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SP17, CT22 |
| Ensembl gene | ENSG00000064199 |
| Ensembl biotype | protein_coding |
| OMIM | 608621 |
| Entrez | 53340 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 7 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000227135, ENST00000524614, ENST00000529498, ENST00000532692, ENST00000889322, ENST00000889323, ENST00000919291, ENST00000919292, ENST00000919293
RefSeq mRNA: 1 — MANE Select: NM_017425
NM_017425
CCDS: CCDS8450
Canonical transcript exons
ENST00000227135 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001014300 | 124673904 | 124673952 |
| ENSE00002166904 | 124694303 | 124697518 |
| ENSE00003490356 | 124681389 | 124681459 |
| ENSE00003505881 | 124675238 | 124675418 |
| ENSE00003615228 | 124691696 | 124691782 |
Expression profiles
Bgee: expression breadth ubiquitous, 249 present calls, max score 98.69.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.0402 / max 531.8351, expressed in 1727 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 117380 | 11.5859 | 1710 |
| 117379 | 0.3173 | 121 |
| 206484 | 0.1369 | 58 |
Top tissues by expression
284 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bronchial epithelial cell | CL:0002328 | 98.69 | gold quality |
| sperm | CL:0000019 | 98.66 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 98.05 | gold quality |
| left testis | UBERON:0004533 | 97.95 | gold quality |
| male germ cell | CL:0000015 | 97.75 | gold quality |
| right testis | UBERON:0004534 | 97.34 | gold quality |
| bronchus | UBERON:0002185 | 97.19 | gold quality |
| adult organism | UBERON:0007023 | 96.61 | gold quality |
| testis | UBERON:0000473 | 95.46 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 93.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 93.00 | gold quality |
| right uterine tube | UBERON:0001302 | 92.42 | gold quality |
| caput epididymis | UBERON:0004358 | 90.09 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 89.18 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 88.22 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 86.94 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.53 | gold quality |
| corpus epididymis | UBERON:0004359 | 85.41 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.34 | gold quality |
| ventricular zone | UBERON:0003053 | 82.08 | gold quality |
| islet of Langerhans | UBERON:0000006 | 81.95 | gold quality |
| cranial nerve II | UBERON:0000941 | 81.64 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 81.48 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 78.85 | gold quality |
| prefrontal cortex | UBERON:0000451 | 77.79 | gold quality |
| adenohypophysis | UBERON:0002196 | 77.75 | gold quality |
| pituitary gland | UBERON:0000007 | 77.29 | gold quality |
| endometrium | UBERON:0001295 | 77.02 | gold quality |
| right lung | UBERON:0002167 | 76.05 | gold quality |
| secondary oocyte | CL:0000655 | 75.97 | gold quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 61.32 |
| E-GEOD-134144 | yes | 31.21 |
| E-MTAB-10287 | yes | 27.05 |
| E-HCAD-1 | yes | 25.60 |
| E-GEOD-130148 | yes | 13.34 |
| E-ANND-3 | yes | 10.61 |
| E-MTAB-9388 | yes | 7.12 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
42 targeting SPA17, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-4525 | 99.94 | 64.38 | 675 |
| HSA-MIR-5010-5P | 99.94 | 64.11 | 705 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-3919 | 99.87 | 69.45 | 2489 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-10395-5P | 99.86 | 67.35 | 676 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-5003-5P | 99.61 | 69.13 | 1624 |
| HSA-MIR-6513-3P | 99.59 | 69.77 | 1102 |
| HSA-MIR-141-5P | 99.57 | 67.86 | 897 |
| HSA-MIR-5004-3P | 99.54 | 68.27 | 1371 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-3168 | 99.08 | 67.75 | 1384 |
| HSA-MIR-4764-5P | 98.88 | 65.53 | 894 |
| HSA-MIR-4260 | 98.78 | 65.37 | 848 |
Literature-anchored findings (GeneRIF, showing 22)
- Sp17 has different expression patterns in cancer cell lines as compared to normal non-testes tissues and a potential pathogenic role in diseased cells (PMID:12213290)
- focuses on the characterization of the genomic organization of an intron-containing gene and establishes a new transcription model (PMID:12393185)
- expression of Sp17, a thought to be gamete-specific protein, in the synoviocytes of 8/8 female rheumatoid arthritis patients (PMID:12739786)
- identification of a nonapeptide sequence within the Sp17 protein that is predicted to have a high binding affinity for HLA-A1 molecules (PMID:14566839)
- Sp17 is expressed in the cell nucleus of ovarian neoplasms (PMID:14712480)
- Sp17 gene expression in myeloma cells is regulated by promoter methylation (PMID:15381930)
- Overexpression of sperm protein 17 is associated with esophageal cancer (PMID:17230514)
- in vitro cultured, monoclonal, cytotoxic T lymphocytes (derived either from advanced OC patients or from healthy donors), specific for sperm protein 17, can eradicate human metastatic OC cells. (PMID:18779750)
- Results suggest a possible role of Sp17 in regulating sperm maturation, capacitation, acrosomal reaction and interactions with the oocyte zona pellucida during the fertilization process. (PMID:19604394)
- Data show that cisplatin induced decrease in Sp17 levels was due to transcriptional inhibition and cisplatin-resistant cell lines did not show this decrease in Sp17 levels in response to cisplatin treatment. (PMID:19685492)
- HSp17 plays a role in metastatic disease and resistance of epithelial ovarian carcinoma to chemotherapy (PMID:19744347)
- Sperm protein 17 is highly expressed in endometrial and cervical cancers. (PMID:20712874)
- SP17 was expressed in many cancer types with an overall frequency of 12%. SP17 was most frequently expressed in a different set of cancer types than MAGE-A and GAGE antigens and rarely overlapped with these proteins. (PMID:23137323)
- Sp17 is highly expressed in hepatocellular carcinoma cells (PMID:23923079)
- NY-ESO-1 and SP17 was not significantly associated with a specific histotype, but high-level GAGE expression was more frequent in squamous cell carcinoma. GAGE expression was demonstrated to be significantly higher in stage II-IIIa than stage I NSCLC. (PMID:24103781)
- Sp17 and ASP cancer/testis antigens were found in ciliated cells of four ciliated hepatic foregut cysts (CHFCs). Further characterization of Sp17 and ASP in patients with CHFCs may provide significant clues for understanding the molecular mechanisms underlying their predisposition to develop squamous cell carcinomas. (PMID:25600306)
- SP17/AKAP4/PTTG1 are expressed in both human NSCLC cell lines and primary tumors and can elicit an immunogenic response in lung cancer patients. (PMID:25739119)
- dendritic cells from human umbilical cord blood modulated for SP17 expression induced antigen-specific anti-tumor immunity against SP17(+) non-small cell lung cancer. (PMID:26300426)
- Results find that Sp17 is highly expressed in benign, borderline, and low grade malignant serous ovarian neoplasms and can be quantified in serum. Sp17 expression may have diagnostic significance in this subset of patients. (PMID:30309325)
- data suggests that SPA17, ANXA2, and SERPINA5 may potentially serve as non-invasive protein biomarkers associated with the fertilization process of the spermatozoa in unexplained male infertility (PMID:31336797)
- Serum Sp17 Autoantibody Serves as a Potential Specific Biomarker in Patients with SAPHO Syndrome. (PMID:33392854)
- ANXA2, SP17, SERPINA5, PRDX2 genes, and sperm DNA fragmentation differentially represented in male partners of infertile couples with normal and abnormal sperm parameters. (PMID:36177795)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Spa17 | ENSMUSG00000001948 |
| rattus_norvegicus | Spa17 | ENSRNOG00000010934 |
| drosophila_melanogaster | igl | FBGN0013467 |
| caenorhabditis_elegans | WBGENE00018214 |
Paralogs (2): GAP43 (ENSG00000172020), RIIAD1 (ENSG00000178796)
Protein
Protein identifiers
Sperm surface protein Sp17 — Q15506 (reviewed: Q15506)
Alternative names: Cancer/testis antigen 22, Sp17-1, Sperm autoantigenic protein 17
All UniProt accessions (2): Q15506, A0A172Q397
UniProt curated annotations — full annotation on UniProt →
Function. Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.
Subunit / interactions. Homodimer. May interact with ROPN1.
Subcellular location. Membrane.
Tissue specificity. Testis and sperm specific.
RefSeq proteins (1): NP_059121* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR003117 | cAMP_dep_PK_reg_su_I/II_a/b | Domain |
| IPR012105 | Sp17 | Family |
| IPR047579 | DD_CABYR_SP17 | Domain |
Pfam: PF00612, PF02197
UniProt features (5 total): region of interest 2, chain 1, domain 1, compositionally biased region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8J07 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15506-F1 | 76.98 | 0.44 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 188 (showing top):
MORF_ITGA2, GOBP_SINGLE_FERTILIZATION, MORF_MSH3, SP3_Q3, MORF_BRCA1, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, GOCC_CELL_SURFACE, GOBP_MALE_GAMETE_GENERATION, GGGTGGRR_PAX4_03, MORF_RAD51L3, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, MODULE_205, SENGUPTA_NASOPHARYNGEAL_CARCINOMA_DN, MORF_CTSB
GO Biological Process (4): epithelial cilium movement involved in extracellular fluid movement (GO:0003351), spermatogenesis (GO:0007283), single fertilization (GO:0007338), binding of sperm to zona pellucida (GO:0007339)
GO Molecular Function (2): calmodulin binding (GO:0005516), protein binding (GO:0005515)
GO Cellular Component (9): extracellular region (GO:0005576), cytoplasm (GO:0005737), cilium (GO:0005929), external side of plasma membrane (GO:0009897), motile cilium (GO:0031514), sperm fibrous sheath (GO:0035686), neuron projection (GO:0043005), sperm principal piece (GO:0097228), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| plasma membrane bounded cell projection | 2 |
| sperm flagellum | 2 |
| cilium movement | 1 |
| extracellular transport | 1 |
| microtubule-based transport | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| fertilization | 1 |
| sperm-egg recognition | 1 |
| protein binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane | 1 |
| cell surface | 1 |
| side of membrane | 1 |
| cilium | 1 |
Protein interactions and networks
STRING
1422 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SPA17 | CABYR | O75952 | 945 |
| SPA17 | AKAP3 | O75969 | 936 |
| SPA17 | ROPN1 | Q9HAT0 | 927 |
| SPA17 | ROPN1L | Q96C74 | 905 |
| SPA17 | ZPBP | Q9BS86 | 863 |
| SPA17 | ABHD2 | P08910 | 829 |
| SPA17 | SAGE1 | Q9NXZ1 | 815 |
| SPA17 | GAS2L2 | Q8NHY3 | 767 |
| SPA17 | RASL10A | Q92737 | 763 |
| SPA17 | PAGE5 | Q96GU1 | 720 |
| SPA17 | MAGEC2 | Q9UBF1 | 720 |
| SPA17 | PRKAR2A | P13861 | 711 |
| SPA17 | GAS2L1 | Q99501 | 695 |
| SPA17 | RHPN1 | Q8TCX5 | 682 |
| SPA17 | GAS2 | O43903 | 676 |
IntAct
47 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPA17 | MYL6B | psi-mi:“MI:0915”(physical association) | 0.830 |
| MYL6B | SPA17 | psi-mi:“MI:0915”(physical association) | 0.830 |
| ROPN1 | SPA17 | psi-mi:“MI:0915”(physical association) | 0.810 |
| SPA17 | ROPN1 | psi-mi:“MI:0915”(physical association) | 0.810 |
| ROPN1L | SPA17 | psi-mi:“MI:0914”(association) | 0.740 |
| SPA17 | ROPN1L | psi-mi:“MI:0915”(physical association) | 0.740 |
| SPA17 | AKAP7 | psi-mi:“MI:0915”(physical association) | 0.720 |
| AKAP7 | SPA17 | psi-mi:“MI:0915”(physical association) | 0.720 |
| FBXO44 | SKP1 | psi-mi:“MI:0914”(association) | 0.670 |
| ACTN2 | SPA17 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AKAP7 | SPA17 | psi-mi:“MI:0915”(physical association) | 0.550 |
| FBXO44 | CUL1 | psi-mi:“MI:0914”(association) | 0.530 |
| AKAP14 | PRKAR2A | psi-mi:“MI:0914”(association) | 0.530 |
| SPA17 | EFCAB7 | psi-mi:“MI:0914”(association) | 0.350 |
| AKAP14 | EFCAB7 | psi-mi:“MI:0914”(association) | 0.350 |
| CSAG1 | NAP1L4 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (35): SPA17 (Two-hybrid), ROPN1 (Two-hybrid), MYL6B (Two-hybrid), SPA17 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), PRKAR2B (Affinity Capture-MS), MYL6B (Affinity Capture-MS), SEC63 (Affinity Capture-MS), EFCAB7 (Affinity Capture-MS), WDR45B (Affinity Capture-MS), USP33 (Affinity Capture-MS), SPA17 (Affinity Capture-MS), SPA17 (Two-hybrid), SPA17 (Affinity Capture-MS)
ESM2 similar proteins: A0A1B0GV96, A0MZ66, A0MZ67, A2VDA9, A5PJI6, A6NKN8, A8R4Q8, E7F7X0, O14990, O19021, O42932, O62770, O62771, P13505, P36425, P48539, P54866, P63054, P63055, P84086, P84087, P84088, Q04504, Q0P561, Q148C4, Q15506, Q28IH8, Q3UYG8, Q4R615, Q5F3A1, Q5M8L3, Q5R4Q3, Q5ZM33, Q62252, Q62736, Q6DBA5, Q6GNQ4, Q6NWC9, Q6P3G4, Q6PUV4
Diamond homologs: O19021, O62770, O62771, O75952, P00515, P12368, P13861, P36425, Q15506, Q4R3X7, Q62252, Q710D7, Q95230, Q9D424, A0A509AKL0, A5K0N4, O14448, O42794, O59922, O77676, P00514, P00516, P05207, P05987, P07278, P07802, P09456, P0A2T6, P0A2T7, P0ACJ8, P0ACJ9, P0ACK0, P0ACK1, P0C605, P10644, P12367, P12369, P12849, P16905, P30625
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
16 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 12 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
666 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:124673950:G:GT | donor_gain | 1.0000 |
| 11:124675415:GAGA:G | donor_gain | 1.0000 |
| 11:124675417:GA:G | donor_gain | 1.0000 |
| 11:124675419:G:GG | donor_gain | 1.0000 |
| 11:124691686:A:AG | acceptor_gain | 1.0000 |
| 11:124691687:T:G | acceptor_gain | 1.0000 |
| 11:124691689:T:TA | acceptor_gain | 1.0000 |
| 11:124691691:TCCA:T | acceptor_loss | 1.0000 |
| 11:124691694:A:AG | acceptor_gain | 1.0000 |
| 11:124691694:AG:A | acceptor_gain | 1.0000 |
| 11:124691694:AGG:A | acceptor_loss | 1.0000 |
| 11:124691695:G:GG | acceptor_gain | 1.0000 |
| 11:124691695:G:GT | acceptor_loss | 1.0000 |
| 11:124691695:GG:G | acceptor_gain | 1.0000 |
| 11:124691695:GGA:G | acceptor_gain | 1.0000 |
| 11:124691695:GGAGC:G | acceptor_gain | 1.0000 |
| 11:124691759:G:GT | donor_gain | 1.0000 |
| 11:124691778:TCTTA:T | donor_gain | 1.0000 |
| 11:124691781:TA:T | donor_gain | 1.0000 |
| 11:124691783:G:GG | donor_gain | 1.0000 |
| 11:124673949:GGAG:G | donor_gain | 0.9900 |
| 11:124673950:GAGG:G | donor_loss | 0.9900 |
| 11:124673951:AGG:A | donor_loss | 0.9900 |
| 11:124673953:G:GA | donor_loss | 0.9900 |
| 11:124673954:T:A | donor_loss | 0.9900 |
| 11:124675416:A:T | donor_gain | 0.9900 |
| 11:124675601:A:AG | acceptor_gain | 0.9900 |
| 11:124675602:T:G | acceptor_gain | 0.9900 |
| 11:124691693:CAGG:C | acceptor_gain | 0.9900 |
| 11:124691694:AGGA:A | acceptor_gain | 0.9900 |
AlphaMissense
1009 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:124675376:T:C | F38L | 0.997 |
| 11:124675378:T:A | F38L | 0.997 |
| 11:124675378:T:G | F38L | 0.997 |
| 11:124675347:T:C | L28P | 0.996 |
| 11:124675382:G:C | A40P | 0.996 |
| 11:124694357:G:C | A123P | 0.996 |
| 11:124675323:T:A | L20H | 0.995 |
| 11:124675332:T:C | L23P | 0.995 |
| 11:124675338:G:C | R25P | 0.995 |
| 11:124675380:C:A | A39E | 0.994 |
| 11:124675307:G:A | G15R | 0.993 |
| 11:124675307:G:C | G15R | 0.993 |
| 11:124675358:C:T | P32S | 0.993 |
| 11:124675359:C:A | P32Q | 0.993 |
| 11:124675368:T:A | I35K | 0.993 |
| 11:124675379:G:C | A39P | 0.993 |
| 11:124675414:A:C | R50S | 0.993 |
| 11:124675414:A:T | R50S | 0.993 |
| 11:124675401:T:C | L46P | 0.992 |
| 11:124675302:C:A | P13Q | 0.990 |
| 11:124675320:T:C | L19P | 0.990 |
| 11:124675368:T:G | I35R | 0.990 |
| 11:124694367:G:C | R126P | 0.990 |
| 11:124675311:T:C | F16S | 0.989 |
| 11:124675323:T:C | L20P | 0.989 |
| 11:124675388:T:G | Y42D | 0.989 |
| 11:124694352:T:C | I121T | 0.989 |
| 11:124675332:T:A | L23Q | 0.988 |
| 11:124675377:T:C | F38S | 0.988 |
| 11:124675391:T:C | F43L | 0.988 |
dbSNP variants (sampled 300 via entrez): RS1000162551 (11:124683734 C>A,T), RS1000215927 (11:124675064 T>G), RS1000272722 (11:124674841 A>T), RS1000297954 (11:124683468 A>C,G), RS1000318835 (11:124688662 A>C), RS1000781082 (11:124682011 G>A), RS1001275698 (11:124673213 C>A), RS1001433754 (11:124694523 T>C), RS1001441458 (11:124687733 C>T), RS1001686527 (11:124675529 G>A), RS1002033360 (11:124692796 G>C), RS1002228744 (11:124675137 G>A), RS1002312429 (11:124680336 C>T), RS1002442365 (11:124678380 G>C), RS1002447472 (11:124686168 G>A,C)
Disease associations
OMIM: gene MIM:608621 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006865_13 | Bipolar disorder | 6.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases methylation, increases expression | 5 |
| sodium arsenite | increases abundance, increases expression | 3 |
| trichostatin A | affects cotreatment, decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression, affects expression | 2 |
| Cyclosporine | affects expression, decreases expression | 2 |
| Particulate Matter | increases abundance, affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | decreases expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| corosolic acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Ivermectin | decreases expression | 1 |
| Manganese | decreases expression | 1 |
| Phenobarbital | affects expression | 1 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bipolar disorder