SPAG16-DT

Summary

SPAG16-DT (SPAG16 divergent transcript, HGNC:52674) is a long non-coding RNA gene on chromosome 2q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52674
Approved symbol	SPAG16-DT
Name	SPAG16 divergent transcript
Location	2q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000196096
Ensembl biotype	lncRNA
Entrez	100130451
RNAcentral	URS0000E60B53 — lncRNA, 631 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000360083, ENST00000715296

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000360083 — 3 exons

Exon	Start	End
ENSE00001407223	213276552	213277941
ENSE00001427385	213278368	213278531
ENSE00004026465	213284033	213284205

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 76.35.

FANTOM5 (CAGE): breadth broad, TPM avg 0.3520 / max 17.7201, expressed in 202 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
33547	0.3520	202

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.35	gold quality
right uterine tube	UBERON:0001302	65.56	gold quality
colonic epithelium	UBERON:0000397	63.94	silver quality
ventricular zone	UBERON:0003053	62.22	gold quality
stromal cell of endometrium	CL:0002255	61.00	gold quality
pituitary gland	UBERON:0000007	58.52	gold quality
ganglionic eminence	UBERON:0004023	57.41	silver quality
adenohypophysis	UBERON:0002196	57.10	gold quality
ovary	UBERON:0000992	55.54	gold quality
left ovary	UBERON:0002119	55.41	gold quality
liver	UBERON:0002107	54.76	gold quality
right lobe of liver	UBERON:0001114	53.82	gold quality
primary visual cortex	UBERON:0002436	53.70	gold quality
right ovary	UBERON:0002118	53.67	gold quality
calcaneal tendon	UBERON:0003701	53.07	silver quality
prefrontal cortex	UBERON:0000451	52.94	gold quality
blood	UBERON:0000178	52.43	silver quality
fallopian tube	UBERON:0003889	52.27	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.82	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.44	gold quality
islet of Langerhans	UBERON:0000006	50.57	gold quality
lymph node	UBERON:0000029	50.35	silver quality
frontal cortex	UBERON:0001870	49.29	gold quality
monocyte	CL:0000576	49.25	silver quality
bone marrow	UBERON:0002371	49.25	silver quality
superior frontal gyrus	UBERON:0002661	49.09	gold quality
hypothalamus	UBERON:0001898	49.07	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	48.92	gold quality
endometrium	UBERON:0001295	48.87	silver quality
gall bladder	UBERON:0002110	48.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.