SPART-AS1

Summary

SPART-AS1 (SPART antisense RNA 1, HGNC:39933) is a long non-coding RNA gene on chromosome 13q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39933
Approved symbol	SPART-AS1
Name	SPART antisense RNA 1
Location	13q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000120664
Ensembl biotype	lncRNA
Entrez	100507135
RNAcentral	URS000075CAAB — lncRNA, 777 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000379848, ENST00000488319, ENST00000493739, ENST00000655398, ENST00000756145

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000379848 — 4 exons

Exon	Start	End
ENSE00001482715	36368198	36368410
ENSE00001482720	36346432	36346507
ENSE00003490410	36365500	36365604
ENSE00003546843	36365730	36365843

Expression profiles

Bgee: expression breadth ubiquitous, 161 present calls, max score 77.34.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.34	gold quality
right uterine tube	UBERON:0001302	76.28	gold quality
right ovary	UBERON:0002118	74.52	gold quality
sural nerve	UBERON:0015488	74.23	gold quality
left ovary	UBERON:0002119	74.14	gold quality
endocervix	UBERON:0000458	73.74	gold quality
body of uterus	UBERON:0009853	73.42	gold quality
oviduct epithelium	UBERON:0004804	72.15	gold quality
ileal mucosa	UBERON:0000331	72.04	silver quality
ectocervix	UBERON:0012249	71.55	gold quality
right lobe of thyroid gland	UBERON:0001119	71.33	gold quality
adenohypophysis	UBERON:0002196	71.31	gold quality
tibialis anterior	UBERON:0001385	71.27	silver quality
left lobe of thyroid gland	UBERON:0001120	71.17	gold quality
thyroid gland	UBERON:0002046	70.43	gold quality
corpus callosum	UBERON:0002336	70.24	gold quality
left uterine tube	UBERON:0001303	70.18	gold quality
uterine cervix	UBERON:0000002	69.97	gold quality
metanephros cortex	UBERON:0010533	69.97	gold quality
stromal cell of endometrium	CL:0002255	69.60	gold quality
kidney epithelium	UBERON:0004819	69.29	gold quality
fallopian tube	UBERON:0003889	68.98	gold quality
ovary	UBERON:0000992	68.66	gold quality
calcaneal tendon	UBERON:0003701	68.42	gold quality
tibial nerve	UBERON:0001323	68.22	gold quality
tibial artery	UBERON:0007610	67.93	gold quality
popliteal artery	UBERON:0002250	67.92	gold quality
pituitary gland	UBERON:0000007	67.88	gold quality
ventricular zone	UBERON:0003053	66.77	gold quality
ganglionic eminence	UBERON:0004023	66.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.