SPATA13-AS1

Summary

SPATA13-AS1 (SPATA13 antisense RNA 1, HGNC:39905) is a long non-coding RNA gene on chromosome 13q12.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39905
Approved symbol	SPATA13-AS1
Name	SPATA13 antisense RNA 1
Location	13q12.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227213
Ensembl biotype	lncRNA
Entrez	100874231
RNAcentral	URS00004E045D — lncRNA, 433 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000430733

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430733 — 3 exons

Exon	Start	End
ENSE00001600960	24252749	24252956
ENSE00001609392	24253079	24253199
ENSE00001708780	24254336	24254439

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 76.90.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	76.90	gold quality
corpus callosum	UBERON:0002336	73.99	gold quality
bone marrow cell	CL:0002092	66.41	silver quality
liver	UBERON:0002107	64.25	gold quality
sural nerve	UBERON:0015488	64.14	silver quality
calcaneal tendon	UBERON:0003701	63.75	gold quality
adrenal tissue	UBERON:0018303	62.84	gold quality
bone marrow	UBERON:0002371	61.83	gold quality
blood	UBERON:0000178	61.01	gold quality
cortex of kidney	UBERON:0001225	60.63	gold quality
lymph node	UBERON:0000029	59.03	gold quality
islet of Langerhans	UBERON:0000006	58.43	gold quality
kidney	UBERON:0002113	58.09	gold quality
monocyte	CL:0000576	56.75	gold quality
vermiform appendix	UBERON:0001154	56.40	gold quality
primary visual cortex	UBERON:0002436	55.63	gold quality
adult mammalian kidney	UBERON:0000082	54.13	gold quality
placenta	UBERON:0001987	53.59	gold quality
gastrocnemius	UBERON:0001388	51.73	gold quality
pancreas	UBERON:0001264	50.30	gold quality
granulocyte	CL:0000094	49.10	silver quality
adrenal gland	UBERON:0002369	49.01	gold quality
heart left ventricle	UBERON:0002084	48.75	gold quality
stomach	UBERON:0000945	48.74	gold quality
tonsil	UBERON:0002372	48.25	gold quality
multicellular organism	UBERON:0000468	48.06	gold quality
body of pancreas	UBERON:0001150	48.04	gold quality
myometrium	UBERON:0001296	48.00	gold quality
apex of heart	UBERON:0002098	47.81	gold quality
heart	UBERON:0000948	47.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.