SPATA17-AS1

Summary

SPATA17-AS1 (SPATA17 antisense RNA 1, HGNC:41086) is a long non-coding RNA gene on chromosome 1q41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41086
Approved symbol	SPATA17-AS1
Name	SPATA17 antisense RNA 1
Location	1q41
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234070
Ensembl biotype	lncRNA
Entrez	103752555
RNAcentral	URS00004D90E8 — lncRNA, 420 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000415765, ENST00000849067, ENST00000849068, ENST00000849069, ENST00000849070

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415765 — 3 exons

Exon	Start	End
ENSE00001611325	217784962	217785120
ENSE00001740754	217781198	217781283
ENSE00001770409	217782125	217782299

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 90.32.

Top tissues by expression

83 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.32	gold quality
ganglionic eminence	UBERON:0004023	73.75	gold quality
right testis	UBERON:0004534	69.77	gold quality
testis	UBERON:0000473	68.77	gold quality
left testis	UBERON:0004533	68.68	gold quality
liver	UBERON:0002107	67.18	silver quality
ventricular zone	UBERON:0003053	66.79	gold quality
colonic epithelium	UBERON:0000397	65.47	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	63.63	gold quality
monocyte	CL:0000576	59.80	gold quality
prefrontal cortex	UBERON:0000451	56.50	gold quality
placenta	UBERON:0001987	55.91	gold quality
islet of Langerhans	UBERON:0000006	54.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.61	gold quality
heart left ventricle	UBERON:0002084	54.07	gold quality
frontal cortex	UBERON:0001870	52.70	gold quality
blood	UBERON:0000178	52.02	gold quality
endometrium	UBERON:0001295	51.99	gold quality
ectocervix	UBERON:0012249	51.78	gold quality
multicellular organism	UBERON:0000468	50.92	gold quality
muscle of leg	UBERON:0001383	50.41	gold quality
body of uterus	UBERON:0009853	50.32	gold quality
temporal lobe	UBERON:0001871	49.53	gold quality
substantia nigra	UBERON:0002038	49.53	gold quality
cerebral cortex	UBERON:0000956	48.89	gold quality
kidney	UBERON:0002113	48.47	silver quality
gastrocnemius	UBERON:0001388	48.29	gold quality
ovary	UBERON:0000992	48.28	gold quality
endocervix	UBERON:0000458	47.78	gold quality
metanephros cortex	UBERON:0010533	47.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.