SPATA3-AS1

Summary

SPATA3-AS1 (SPATA3 antisense RNA 1, HGNC:28013) is a long non-coding RNA gene on chromosome 2q37.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28013
Approved symbol	SPATA3-AS1
Name	SPATA3 antisense RNA 1
Location	2q37.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238062
Ensembl biotype	lncRNA
Entrez	348761
RNAcentral	URS000075EF5A — lncRNA, 3526 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000414876, ENST00000418330, ENST00000426904, ENST00000434094, ENST00000441063, ENST00000446741, ENST00000457803, ENST00000657511, ENST00000660623, ENST00000662955, ENST00000740225, ENST00000740226, ENST00000740227, ENST00000740228, ENST00000793625, ENST00000793626, ENST00000793627, ENST00000793628, ENST00000793629

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414876 — 6 exons

Exon	Start	End
ENSE00001606387	230992334	230992402
ENSE00001618638	230986984	230988179
ENSE00001676821	230995277	230995385
ENSE00001683199	230984368	230986110
ENSE00001762093	230995848	230996031
ENSE00001779001	230991769	230991975

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 90.67.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0606 / max 59.0921, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34472	0.0606	3

Top tissues by expression

191 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	90.67	gold quality
right testis	UBERON:0004534	90.07	gold quality
testis	UBERON:0000473	87.17	gold quality
sperm	CL:0000019	85.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.79	silver quality
buccal mucosa cell	CL:0002336	65.44	gold quality
kidney epithelium	UBERON:0004819	63.22	gold quality
adult organism	UBERON:0007023	63.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	62.74	gold quality
granulocyte	CL:0000094	62.59	gold quality
nasal cavity epithelium	UBERON:0005384	60.85	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	60.71	gold quality
deltoid	UBERON:0001476	60.45	gold quality
myocardium	UBERON:0002349	60.45	gold quality
nasal cavity mucosa	UBERON:0001826	60.11	gold quality
ganglionic eminence	UBERON:0004023	59.90	silver quality
tibialis anterior	UBERON:0001385	59.74	silver quality
ventricular zone	UBERON:0003053	59.44	silver quality
gingiva	UBERON:0001828	57.50	gold quality
gingival epithelium	UBERON:0001949	57.26	gold quality
skeletal muscle tissue	UBERON:0001134	57.07	gold quality
biceps brachii	UBERON:0001507	57.06	gold quality
pancreatic ductal cell	CL:0002079	56.91	silver quality
corpus epididymis	UBERON:0004359	56.12	gold quality
cauda epididymis	UBERON:0004360	55.81	gold quality
upper arm skin	UBERON:0004263	55.66	gold quality
heart right ventricle	UBERON:0002080	55.62	gold quality
ileal mucosa	UBERON:0000331	55.60	silver quality
quadriceps femoris	UBERON:0001377	55.55	gold quality
tibial nerve	UBERON:0001323	55.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.