SPOP
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Also known as TEF2BTBD32
Summary
SPOP (speckle type BTB/POZ protein, HGNC:11254) is a protein-coding gene on chromosome 17q21.33, encoding Speckle-type POZ protein (O43791). Component of a cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates the ubiquitination of target proteins, leading most often to their proteasomal degradation.
This gene encodes a protein that may modulate the transcriptional repression activities of death-associated protein 6 (DAXX), which interacts with histone deacetylase, core histones, and other histone-associated proteins. In mouse, the encoded protein binds to the putative leucine zipper domain of macroH2A1.2, a variant H2A histone that is enriched on inactivated X chromosomes. The BTB/POZ domain of this protein has been shown in other proteins to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes. Alternative splicing of this gene results in multiple transcript variants encoding the same protein.
Source: NCBI Gene 8405 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 1
- Clinical variants (ClinVar): 243 total — 8 likely-pathogenic
- Phenotypes (HPO): 72
- Druggable target: yes
- Cancer driver (intOGen): activating (oncogene-like) across 5 cancer types
- MANE Select transcript:
NM_001007228
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11254 |
| Approved symbol | SPOP |
| Name | speckle type BTB/POZ protein |
| Location | 17q21.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TEF2, BTBD32 |
| Ensembl gene | ENSG00000121067 |
| Ensembl biotype | protein_coding |
| OMIM | 602650 |
| Entrez | 8405 |
Gene structure
Transcript identifiers
Ensembl transcripts: 55 — 43 protein_coding, 6 nonsense_mediated_decay, 5 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000347630, ENST00000393328, ENST00000451526, ENST00000502385, ENST00000503676, ENST00000504102, ENST00000504212, ENST00000504889, ENST00000505581, ENST00000506399, ENST00000507551, ENST00000507970, ENST00000508805, ENST00000509079, ENST00000509765, ENST00000509869, ENST00000510476, ENST00000513080, ENST00000514121, ENST00000515508, ENST00000572686, ENST00000577134, ENST00000659760, ENST00000665825, ENST00000671445, ENST00000854669, ENST00000854670, ENST00000854671, ENST00000854672, ENST00000854673, ENST00000854674, ENST00000930000, ENST00000970752, ENST00000970753, ENST00000970754, ENST00000970755, ENST00000970756, ENST00000970757, ENST00000970758, ENST00000970759, ENST00000970760, ENST00000970761, ENST00000970762, ENST00000970763, ENST00000970764, ENST00000970765, ENST00000970766, ENST00000970767, ENST00000970768, ENST00000970769, ENST00000970770, ENST00000970771, ENST00000970772, ENST00000970773, ENST00000970774
RefSeq mRNA: 9 — MANE Select: NM_001007228
NM_001007226, NM_001007227, NM_001007228, NM_001007229, NM_001007230, NM_001370730, NM_001370731, NM_001370732, NM_003563
CCDS: CCDS11551
Canonical transcript exons
ENST00000504102 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002070429 | 49598884 | 49600522 |
| ENSE00002082963 | 49677933 | 49678097 |
| ENSE00002250870 | 49601865 | 49602007 |
| ENSE00003597328 | 49618981 | 49619108 |
| ENSE00003641865 | 49622733 | 49622876 |
| ENSE00003672546 | 49607250 | 49607372 |
| ENSE00003680879 | 49611280 | 49611457 |
| ENSE00003784716 | 49607874 | 49607929 |
| ENSE00003786237 | 49619234 | 49619385 |
| ENSE00003787758 | 49621946 | 49622067 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 97.47.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 29.9850 / max 401.9012, expressed in 1822 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 166816 | 19.2760 | 1815 |
| 166817 | 10.4538 | 1769 |
| 208241 | 0.1490 | 67 |
| 166814 | 0.0429 | 18 |
| 166813 | 0.0399 | 17 |
| 166812 | 0.0233 | 6 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| blood vessel layer | UBERON:0004797 | 97.47 | gold quality |
| nipple | UBERON:0002030 | 97.23 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 97.21 | gold quality |
| saphenous vein | UBERON:0007318 | 97.00 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 96.71 | gold quality |
| lower esophagus | UBERON:0013473 | 96.69 | gold quality |
| pylorus | UBERON:0001166 | 96.67 | gold quality |
| seminal vesicle | UBERON:0000998 | 96.63 | gold quality |
| popliteal artery | UBERON:0002250 | 96.57 | gold quality |
| tibial artery | UBERON:0007610 | 96.56 | gold quality |
| urethra | UBERON:0000057 | 96.46 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 96.30 | gold quality |
| cortical plate | UBERON:0005343 | 96.29 | gold quality |
| aorta | UBERON:0000947 | 96.13 | gold quality |
| cardia of stomach | UBERON:0001162 | 96.10 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 95.99 | gold quality |
| body of uterus | UBERON:0009853 | 95.65 | gold quality |
| ascending aorta | UBERON:0001496 | 95.57 | gold quality |
| thoracic aorta | UBERON:0001515 | 95.54 | gold quality |
| lower lobe of lung | UBERON:0008949 | 95.44 | gold quality |
| right coronary artery | UBERON:0001625 | 95.15 | gold quality |
| vena cava | UBERON:0004087 | 95.11 | gold quality |
| myometrium | UBERON:0001296 | 95.10 | gold quality |
| sigmoid colon | UBERON:0001159 | 95.09 | gold quality |
| colonic epithelium | UBERON:0000397 | 95.08 | gold quality |
| fundus of stomach | UBERON:0001160 | 95.06 | gold quality |
| rectum | UBERON:0001052 | 94.99 | gold quality |
| left uterine tube | UBERON:0001303 | 94.93 | gold quality |
| pericardium | UBERON:0002407 | 94.72 | gold quality |
| cerebellum | UBERON:0002037 | 94.68 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 12.65 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
5 targets.
| Target | Regulation |
|---|---|
| COL1A1 | Activation |
| GLI3 | Repression |
| PTCH1 | Activation |
| PTHLH | Activation |
| SP7 | Activation |
miRNA regulators (miRDB)
132 targeting SPOP, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
Literature-anchored findings (GeneRIF, showing 40)
- Mutagenesis study suggests that the ability of SPOP to self-associate as well as its ability to bind with Daxx was important for the modulation of Daxx-mediated transcriptional repression. (PMID:15240113)
- Here, we report that the E3 ubiquitin ligase consisting of SPOP and CULLIN3 is able to ubiquitinate the Polycomb group protein BMI1. (PMID:15897469)
- SPOP/Cul3-ubiquitin ligase plays an essential role in the control of Daxx level and, thus, in the regulation of Daxx-mediated cellular processes, including transcriptional regulation and apoptosis (PMID:16524876)
- define a novel mechanism whereby the phosphoinositide phosphatidylinositol 5-phosphate leads to stimulation of Cul3-SPOP ubiquitin ligase activity (PMID:18218622)
- The study first proposes the proapoptotic aspect of the BTB/POZ domain of SPOP protein based on the finding that cells expressing the C-terminal fragment of SPOP containing the BTB/POZ domain underwent apoptosis. (PMID:18997279)
- study found that SPOP plays a conserved role in TNF-mediated JNK signaling and was highly expressed in 99% of clear cell renal cell carcinomas (PMID:19164706)
- The study provides a molecular understanding of how SPOP and other MATH-BTB proteins recruit substrates to Cul3 and how their dimerization and conformational variability may facilitate avid interactions with diverse substrates. (PMID:19818708)
- SPOP expression inhibited SRC-3-mediated oncogenic signaling and tumorigenesis. (PMID:21577200)
- These results suggest that the novel regulatory mechanism of BRMS1 by Cul3-SPOP complex is important for breast cancer progression. (PMID:22085717)
- Adaptor protein self-assembly provides a graded level of regulation of the SPOP/Cul3 E3 ligase toward its multiple protein substrates. (PMID:22632832)
- Loss of expression of SPOP gene might play a role in cancer pathogenesis by altering tumor suppressor gene functions of SPOP. (PMID:23216165)
- SPOP plays a critical tumor suppressor role in prostate cancer cells, promoting the turnover of SRC-3 protein and suppressing androgen receptor transcriptional activity. (PMID:23559371)
- Prevalence of SPOP gene mutation varies depending on cancer types. It is common in prostate cancer and endometrial cancer, and rare in breast cancer, lung cancer, liver cancer, and acute leukemias. (PMID:23654205)
- Crystal structure of the high-order SPOP oligomer is presented depicting a helical organization that could enhance the efficiency of substrate ubiquitination. (PMID:23999291)
- Dzip1-dependent stabilization of Spop/HIB is evolutionarily conserved and essential for proper regulation of Gli/Ci proteins in the Hh pathway. (PMID:24072710)
- Prostate-cancer-associated SPOP mutants cannot bind to and promote androgen receptor degradation. (PMID:24508459)
- the Speckle-Type POZ Protein (SPOP) gene is mutated in prostate cancer in a manner that is not specific for ethnicity, clinical, or pathologic parameters (PMID:24563616)
- Results indicate that SPOP serves as a regulatory hub to promote ccRCC tumorigenesis. (PMID:24656772)
- a novel mutation in SPOP that tracks with prostate cancer within a family and is predicted to be deleterious. Taken together, our results implicate SPOP as a candidate gene for hereditary prostate cancer (PMID:24796539)
- miR-145 has a role in post-transcriptional regulation of SPOP expression in selected tissues. (PMID:24845504)
- This study reveals novel molecular events underlying the regulation of DDIT3 protein homeostasis and provides insight in understanding the relationship between SPOP mutations and ER stress dysregulation in prostate cancer. (PMID:24990631)
- SPOP mutations and novel variants were detected in 5 of 27 aggressive PCa and one of 22 less aggressive PCa (PMID:24994784)
- SPOP mutations contribute to prostate cancer development by altering the steady-state levels of key components in the androgen-signaling pathway; mutations are also observed in endometrial cancers (PMID:25058385)
- SPOP plays critical roles in suppressing gastric tumorigenesis through inhibiting Hh/Gli2 signaling pathway. It may provide an alternative strategy for developing therapeutic agents of gastric cancer in future. (PMID:25204354)
- The present study demonstrates that prognosis varies depending on SPOP expression and mutational status, hence, defining a new biotype of PCa associated with a worse prognosis. (PMID:25204806)
- studies highlight the AR axis as the key transcriptional output of SPOP in prostate adenocarcinoma and provide an explanation for the prostate-specific tumor suppressor role of wt-SPOP (PMID:25274033)
- SPOP mutants impaired ubiquitylation of a subset of proteins in a dominant-negative fashion. (PMID:25278611)
- SPOP has potential use as novel biomarker of glioma and may serve as an independent predictive factor for prognosis of glioma patients. (PMID:25351530)
- Our study revealed novel molecular mechanisms underlying the regulation of ERa protein and provided insights in understanding the relationship between SPOP mutations and the development of endometrial cancer. (PMID:25766326)
- results suggest that SPOP plays a pivotal role in colorectal cancer (CRC) through mesenchymal-epithelial transition and matrix metalloproteases. (PMID:26022775)
- our findings emphasize the critical role of SPOP in the regulation of proliferation and migration in liver cancer (PMID:26156804)
- SPOP functions as a tumor suppressor to negatively regulate the stability of the ERG oncoprotein in prostate cancer. (PMID:26344095)
- Overcoming ERG resistance to SPOP-mediated degradation represents a viable strategy for treatment of prostate cancers expressing either mutated SPOP or truncated ERG. (PMID:26344096)
- Data indicate that a mutation in the SPOP gene may not be associated with breast cancer, particularly in Chinese women. (PMID:26505385)
- SPOP acts as a tumor suppressor by promoting senescence through degrading SENP7. (PMID:26527005)
- While wild-type SPOP localizes to liquid nuclear speckles, self-association-deficient SPOP mutants have a diffuse distribution in the nucleus. SPOP oligomerizes through its BTB and BACK domains. (PMID:27220849)
- Results show that SPOP is highly expressed in clear cell renal cell carcinoma (RCC) and associated with disease progression. In vitro, SPOP promotes the invasiveness of RCC. (PMID:27572476)
- SPOP-containing complex regulates SETD2 stability and H3K36me3-coupled alternative splicing. (PMID:27614073)
- Prostate cancer-derived SPOP mutants failed to interact with Cdc20 to promote its degradation. As a result, SPOP-deficient prostate cancer cells with elevated Cdc20 expression became resistant to a pharmacological Cdc20 inhibitor. (PMID:27780719)
- methylation status of SPOP promoter can be used as a novel epigenetic biomarker and a therapeutic target in colorectal cancer. (PMID:28032859)
Cross-species orthologs
39 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | spop | ENSDARG00000100519 |
| mus_musculus | Spop | ENSMUSG00000057522 |
| mus_musculus | Tdpoz3 | ENSMUSG00000058005 |
| mus_musculus | Tdpoz4 | ENSMUSG00000060256 |
| mus_musculus | Gm5773 | ENSMUSG00000068879 |
| mus_musculus | Spopfm2 | ENSMUSG00000074424 |
| mus_musculus | Spopfm3 | ENSMUSG00000090268 |
| mus_musculus | Tdpoz1 | ENSMUSG00000094084 |
| mus_musculus | Tdpoz5 | ENSMUSG00000094163 |
| mus_musculus | Tdpoz9 | ENSMUSG00000094328 |
| mus_musculus | Tdpoz7 | ENSMUSG00000095251 |
| mus_musculus | Tdpoz9-ps1 | ENSMUSG00000095822 |
| mus_musculus | Tdpoz8 | ENSMUSG00000096879 |
| mus_musculus | Tdpoz2 | ENSMUSG00000103362 |
| rattus_norvegicus | Spop | ENSRNOG00000004686 |
| rattus_norvegicus | ENSRNOG00000071369 | |
| rattus_norvegicus | ENSRNOG00000071734 | |
| rattus_norvegicus | ENSRNOG00000072165 | |
| rattus_norvegicus | ENSRNOG00000072589 | |
| rattus_norvegicus | ENSRNOG00000073644 | |
| rattus_norvegicus | ENSRNOG00000074034 | |
| rattus_norvegicus | ENSRNOG00000077984 | |
| rattus_norvegicus | ENSRNOG00000079210 | |
| rattus_norvegicus | Spopfm2l1 | ENSRNOG00000080285 |
| rattus_norvegicus | ENSRNOG00000081034 | |
| rattus_norvegicus | ENSRNOG00000082881 | |
| rattus_norvegicus | ENSRNOG00000084634 | |
| rattus_norvegicus | ENSRNOG00000085189 | |
| rattus_norvegicus | ENSRNOG00000085967 | |
| rattus_norvegicus | ENSRNOG00000086343 | |
| rattus_norvegicus | ENSRNOG00000088118 | |
| rattus_norvegicus | ENSRNOG00000088911 | |
| rattus_norvegicus | ENSRNOG00000089625 | |
| rattus_norvegicus | ENSRNOG00000089833 | |
| rattus_norvegicus | ENSRNOG00000090182 | |
| drosophila_melanogaster | BTBD9 | FBGN0030228 |
| drosophila_melanogaster | CG17068 | FBGN0031098 |
| drosophila_melanogaster | lute | FBGN0262871 |
| caenorhabditis_elegans | WBGENE00015463 |
Paralogs (11): BTBD1 (ENSG00000064726), ABTB1 (ENSG00000114626), KBTBD4 (ENSG00000123444), BTBD3 (ENSG00000132640), BTBD2 (ENSG00000133243), SPOPL (ENSG00000144228), ABTB3 (ENSG00000151136), ABTB2 (ENSG00000166016), KLHL11 (ENSG00000178502), BTBD9 (ENSG00000183826), BTBD6 (ENSG00000184887)
Protein
Protein identifiers
Speckle-type POZ protein — O43791 (reviewed: O43791)
Alternative names: HIB homolog 1, Roadkill homolog 1
All UniProt accessions (10): A0A590UJA7, D6RA79, D6RBR3, D6RD94, D6RDG8, D6RFL7, D6RGZ4, D6RIS7, O43791, H0Y977
UniProt curated annotations — full annotation on UniProt →
Function. Component of a cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex that mediates the ubiquitination of target proteins, leading most often to their proteasomal degradation. In complex with CUL3, involved in ubiquitination and proteasomal degradation of BRMS1, DAXX, PDX1/IPF1, GLI2 and GLI3. In complex with CUL3, involved in ubiquitination of MACROH2A1 and BMI1; this does not lead to their proteasomal degradation. Inhibits transcriptional activation of PDX1/IPF1 targets, such as insulin, by promoting PDX1/IPF1 degradation. The cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex containing homodimeric SPOP has higher ubiquitin ligase activity than the complex that contains the heterodimer formed by SPOP and SPOPL. Involved in the regulation of bromodomain and extra-terminal motif (BET) proteins BRD2, BRD3, BRD4 stability. Plays an essential role for proper translation, but not for their degradation, of critical DNA replication licensing factors CDT1 and CDC6, thereby participating in DNA synthesis and cell proliferation. Regulates interferon regulatory factor 1/IRF1 proteasomal turnover by targeting S/T-rich degrons in IRF1. Facilitates the lysosome-dependent degradation of enterovirus EV71 protease 2A by inducing its ‘Lys-48’-linked polyubiquitination, which ultimately restricts EV71 replication. Acts as an antiviral factor also against hepatitis B virus/HBV by promoting ubiquitination and subsequent degradation of HNF1A. In turn, inhibits HBV transcription and replication by preventing HNF1A stimulating activity of HBV preS1 promoter and enhancer II. Involved in ubiquitination of BRDT and promotes its degradation, thereby regulates histone removal in early condensing spermatids prior to histone-to-protamine exchange.
Subunit / interactions. Interacts with GLI2 and GLI3. Homodimer and homooligomer. Heterodimer with SPOPL. Each dimer interacts with two CUL3 molecules. Part of cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes that contain CUL3 and homodimeric SPOP, or the heterodimer formed by SPOP and SPOPL, plus a target protein, such as MACROH2A1, PDX1/IPF1, BMI1, BRMS1 and DAXX. Interacts with IRF1; this interaction mediates IRF1 proteasomal degradation. Interacts with HNF1A.
Subcellular location. Nucleus. Nucleus speckle. Cytoplasm.
Tissue specificity. Widely expressed.
Disease relevance. Nabais Sa-de Vries syndrome 1 (NSDVS1) [MIM:618828] An autosomal dominant disorder characterized by global developmental delay, impaired intellectual development, speech delay, and variable behavioral abnormalities. Affected individuals show congenital microcephaly and dysmorphic facial features, including round face, small palpebral fissures, highly arched eyebrows, and short nose. The disease is caused by variants affecting the gene represented in this entry. Nabais Sa-de Vries syndrome 2 (NSDVS2) [MIM:618829] An autosomal dominant disorder characterized by global developmental delay apparent from birth, impaired intellectual development, speech delay, dysmorphic facial features, and additional anomalies including congenital heart defects, sleep disturbances, hypotonia, and variable endocrine abnormalities. The disease is caused by variants affecting distinct genetic loci, including the gene represented in this entry.
Domain organisation. The BTB (POZ) domain mediates dimerization and interaction with CUL3. The MATH domain mediates interaction with protein-ubiquitin ligase substrates, such as MACROH2A1 and BMI1.
Pathway. Protein modification; protein ubiquitination.
Miscellaneous. Antigen recognized by serum from scleroderma patient.
Similarity. Belongs to the Tdpoz family.
RefSeq proteins (9): NP_001007227, NP_001007228, NP_001007229, NP_001007230, NP_001007231, NP_001357659, NP_001357660, NP_001357661, NP_003554 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000210 | BTB/POZ_dom | Domain |
| IPR002083 | MATH/TRAF_dom | Domain |
| IPR008974 | TRAF-like | Homologous_superfamily |
| IPR011333 | SKP1/BTB/POZ_sf | Homologous_superfamily |
| IPR034089 | SPOP_C | Domain |
| IPR056423 | BACK_BPM_SPOP | Domain |
Pfam: PF00651, PF22486, PF24570
UniProt features (60 total): helix 20, strand 16, mutagenesis site 9, sequence variant 6, region of interest 4, domain 2, chain 1, sequence conflict 1, turn 1
Structure
Experimental structures (PDB)
36 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3IVV | X-RAY DIFFRACTION | 1.25 |
| 3HSV | X-RAY DIFFRACTION | 1.43 |
| 7LIN | X-RAY DIFFRACTION | 1.44 |
| 7D3D | X-RAY DIFFRACTION | 1.45 |
| 9HFV | X-RAY DIFFRACTION | 1.45 |
| 7LIP | X-RAY DIFFRACTION | 1.48 |
| 4HS2 | X-RAY DIFFRACTION | 1.53 |
| 3HQL | X-RAY DIFFRACTION | 1.66 |
| 3HQM | X-RAY DIFFRACTION | 1.74 |
| 3IVB | X-RAY DIFFRACTION | 1.75 |
| 6I5P | X-RAY DIFFRACTION | 1.81 |
| 6I68 | X-RAY DIFFRACTION | 1.85 |
| 6I41 | X-RAY DIFFRACTION | 1.9 |
| 9HGG | X-RAY DIFFRACTION | 1.9 |
| 7LIQ | X-RAY DIFFRACTION | 1.98 |
| 4O1V | X-RAY DIFFRACTION | 2 |
| 6F8F | X-RAY DIFFRACTION | 2 |
| 6F8G | X-RAY DIFFRACTION | 2.03 |
| 3IVQ | X-RAY DIFFRACTION | 2.1 |
| 6I7A | X-RAY DIFFRACTION | 2.2 |
| 3HQH | X-RAY DIFFRACTION | 2.3 |
| 4EOZ | X-RAY DIFFRACTION | 2.4 |
| 4J8Z | X-RAY DIFFRACTION | 2.42 |
| 3HTM | X-RAY DIFFRACTION | 2.5 |
| 3HQI | X-RAY DIFFRACTION | 2.62 |
| 3HU6 | X-RAY DIFFRACTION | 2.7 |
| 7LIO | X-RAY DIFFRACTION | 3.01 |
| 9OUW | ELECTRON MICROSCOPY | 3.2 |
| 7KLZ | X-RAY DIFFRACTION | 3.4 |
| 8DWU | ELECTRON MICROSCOPY | 3.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O43791-F1 | 90.38 | 0.78 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 87 | strongly reduced affinity for substrate proteins. |
| 123 | strongly reduced affinity for substrate proteins. |
| 130 | strongly reduced affinity for substrate proteins. |
| 131 | strongly reduced affinity for substrate proteins. |
| 133 | strongly reduced affinity for substrate proteins. |
| 186 | strongly reduced homodimerization. reduces the activity of the cullin-ring-based bcr (btb-cul3-rbx1) e3 ubiquitin-protei |
| 190 | strongly reduced homodimerization. reduces the activity of the cullin-ring-based bcr (btb-cul3-rbx1) e3 ubiquitin-protei |
| 193 | strongly reduced homodimerization. reduces the activity of the cullin-ring-based bcr (btb-cul3-rbx1) e3 ubiquitin-protei |
| 217 | strongly reduced homodimerization. reduces the activity of the cullin-ring-based bcr (btb-cul3-rbx1) e3 ubiquitin-protei |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-5632684 | Hedgehog ‘on’ state |
| R-HSA-9929491 | SPOP-mediated proteasomal degradation of PD-L1(CD274) |
| R-HSA-162582 | Signal Transduction |
| R-HSA-5358351 | Signaling by Hedgehog |
MSigDB gene sets: 427 (showing top):
JI_RESPONSE_TO_FSH_UP, TGCGCANK_UNKNOWN, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GCANCTGNY_MYOD_Q6, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, AP2_Q3, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, ATGTTAA_MIR302C, MYOD_01, BLALOCK_ALZHEIMERS_DISEASE_UP, TGCTGAY_UNKNOWN, GATA6_01
GO Biological Process (5): protein polyubiquitination (GO:0000209), regulation of proteolysis (GO:0030162), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), protein ubiquitination (GO:0016567), protein catabolic process (GO:0030163)
GO Molecular Function (4): ubiquitin protein ligase binding (GO:0031625), identical protein binding (GO:0042802), molecular function inhibitor activity (GO:0140678), protein binding (GO:0005515)
GO Cellular Component (5): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), nuclear speck (GO:0016607), Cul3-RING ubiquitin ligase complex (GO:0031463)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Signaling by Hedgehog | 1 |
| Regulation of PD-L1(CD274) Post-translational modification | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| protein ubiquitination | 1 |
| proteolysis | 1 |
| regulation of protein metabolic process | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| protein modification by small protein conjugation | 1 |
| macromolecule catabolic process | 1 |
| protein metabolic process | 1 |
| ubiquitin-like protein ligase binding | 1 |
| protein binding | 1 |
| molecular function regulator activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| nuclear ribonucleoprotein granule | 1 |
| cullin-RING ubiquitin ligase complex | 1 |
Protein interactions and networks
STRING
3751 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SPOP | CUL3 | Q13618 | 997 |
| SPOP | RBX1 | P62877 | 961 |
| SPOP | DAXX | Q9UER7 | 876 |
| SPOP | GLI1 | P08151 | 856 |
| SPOP | AR | P10275 | 788 |
| SPOP | TRIM24 | O15164 | 705 |
| SPOP | FOXA1 | P55317 | 696 |
| SPOP | GLI2 | P10070 | 693 |
| SPOP | EVX1 | P49640 | 685 |
| SPOP | CHD1 | O14646 | 668 |
| SPOP | TMPRSS2 | O15393 | 654 |
| SPOP | CD274 | Q9NZQ7 | 652 |
| SPOP | PTEN | P60484 | 644 |
| SPOP | CDK4 | P11802 | 621 |
| SPOP | SUFU | Q9UMX1 | 617 |
IntAct
1333 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CUL3 | SPOP | psi-mi:“MI:0915”(physical association) | 0.890 |
| SPOP | CUL3 | psi-mi:“MI:0407”(direct interaction) | 0.890 |
| CUL3 | SPOP | psi-mi:“MI:0407”(direct interaction) | 0.890 |
| SPOP | CUL3 | psi-mi:“MI:2364”(proximity) | 0.890 |
| MYD88 | SPOP | psi-mi:“MI:0915”(physical association) | 0.880 |
| SPOP | MYD88 | psi-mi:“MI:0915”(physical association) | 0.880 |
| SPOP | MYD88 | psi-mi:“MI:0403”(colocalization) | 0.880 |
| NUP50 | KPNA4 | psi-mi:“MI:0914”(association) | 0.830 |
| NUP50 | KPNA3 | psi-mi:“MI:0914”(association) | 0.780 |
| SPOP | DAXX | psi-mi:“MI:0915”(physical association) | 0.760 |
| DAXX | SPOP | psi-mi:“MI:0915”(physical association) | 0.760 |
| SPOP | DAXX | psi-mi:“MI:0403”(colocalization) | 0.760 |
| SPOP | DAXX | psi-mi:“MI:2364”(proximity) | 0.760 |
| NCOA3 | SPOP | psi-mi:“MI:0915”(physical association) | 0.740 |
| SPOP | NCOA3 | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| NCOA3 | SPOP | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| SPOP | NCOA3 | psi-mi:“MI:0915”(physical association) | 0.740 |
| NCOA3 | SPOP | psi-mi:“MI:0914”(association) | 0.740 |
BioGRID (815): SPOP (Affinity Capture-Western), SPOP (Affinity Capture-Western), SPOP (Affinity Capture-Western), SPOP (Reconstituted Complex), CUL3 (Affinity Capture-Western), SPOP (Affinity Capture-Western), AR (Affinity Capture-Western), SPOP (Reconstituted Complex), SPOP (Affinity Capture-Western), BRMS1 (Affinity Capture-Western), SPOP (Reconstituted Complex), DEK (Biochemical Activity), DEK (Affinity Capture-Western), SPOP (Affinity Capture-MS), SPOP (Affinity Capture-MS)
ESM2 similar proteins: A0JMG1, A2VE52, D3K5L7, E0CZ16, E1C6Q1, E2R222, F1LZ52, F1LZF0, F1MBP6, O13016, O35345, O43791, O60684, O95164, O95198, O95544, P35815, P36993, P54797, P58058, P63143, P63144, Q0IHH9, Q0V7M0, Q0VCW1, Q15645, Q28528, Q28F89, Q2M2N2, Q2TA46, Q3UA06, Q4PJK1, Q5BL35, Q5NVK7, Q5RBV0, Q5REP9, Q5U1X1, Q5XHZ9, Q6GR09, Q6IQ16
Diamond homologs: A0JMG1, A1YEX3, B0WWP2, B3DIV9, B3M9V8, B3NDN0, B4GRJ2, B4HIK1, B4J045, B4L0G9, B4LIG6, B4MXW3, B4PD06, B4QLQ2, B7U179, D3Z8N4, D4A2K4, E0CZ16, E7F6F9, F1LZF0, F1MBP6, O14682, O22286, O35709, O43791, O81432, O95198, P0DMR5, P0DMR6, P24278, P28575, P34568, P58544, P58545, Q08DK3, Q08DS0, Q0D2A9, Q0IHH9, Q0VCW1, Q16RL8
SIGNOR signaling
24 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SPOP | “down-regulates quantity by destabilization” | NCOA3 | binding |
| SPOP | “down-regulates quantity by destabilization” | EGLN2 | ubiquitination |
| SPOP | “down-regulates quantity” | BRMS1 | ubiquitination |
| SPOP | “down-regulates quantity” | DAXX | ubiquitination |
| SPOP | “down-regulates quantity” | GLI2 | ubiquitination |
| SPOP | “down-regulates quantity” | GLI3 | ubiquitination |
| SPOP | “down-regulates quantity” | HDAC6 | ubiquitination |
| “1-phosphatidyl-1D-myo-inositol 5-phosphate(3-)” | “up-regulates activity” | SPOP | binding |
| SPOP | “down-regulates activity” | GMNN | ubiquitination |
| SPOP | “up-regulates activity” | CUL3 | binding |
| SPOP | “up-regulates activity” | MACROH2A1 | binding |
| SPOP | “up-regulates activity” | BMI1 | binding |
| SPOP | “up-regulates activity” | “Cullin 3-RBX1-Skp1” | binding |
| SPOP | “down-regulates activity” | INF2 | binding |
| SPOP | up-regulates | “Cullin 3-RBX1-Skp1” | binding |
| SPOP | “down-regulates quantity by destabilization” | GLYR1 | binding |
| SPOP | “down-regulates quantity by destabilization” | TRIM24 | binding |
| SPOP | “down-regulates quantity by destabilization” | DEK | binding |
| SPOP | “down-regulates quantity” | CD274 | ubiquitination |
| LIMK2 | “down-regulates activity” | SPOP | phosphorylation |
| SPOP | “down-regulates quantity” | PDX1 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 129 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Defective binding of RB1 mutants to E2F1,(E2F2, E2F3) | 7 | 40.7× | 6e-08 |
| Aberrant regulation of mitotic cell cycle due to RB1 defects | 6 | 22.4× | 2e-05 |
| G1 Phase | 6 | 21.7× | 2e-05 |
| Diseases of mitotic cell cycle | 6 | 21.7× | 2e-05 |
| Cyclin D associated events in G1 | 9 | 19.2× | 2e-07 |
| NS1 Mediated Effects on Host Pathways | 6 | 15.7× | 1e-04 |
| Oncogene Induced Senescence | 5 | 15.4× | 6e-04 |
| Mitotic G1 phase and G1/S transition | 8 | 13.5× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| NLS-bearing protein import into nucleus | 8 | 52.2× | 8e-10 |
| G1/S transition of mitotic cell cycle | 12 | 19.6× | 8e-10 |
| positive regulation of G1/S transition of mitotic cell cycle | 6 | 19.6× | 9e-05 |
| positive regulation of fibroblast proliferation | 5 | 12.0× | 6e-03 |
| protein import into nucleus | 10 | 11.7× | 4e-06 |
| cell surface receptor protein tyrosine kinase signaling pathway | 6 | 8.5× | 7e-03 |
| protein autophosphorylation | 7 | 8.3× | 2e-03 |
| regulation of cell population proliferation | 8 | 7.5× | 2e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 5 cancer types — NHL, PRAD, PROSTATE, UCEC, UCS.
Clinical variants and AI predictions
ClinVar
243 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 8 |
| Uncertain significance | 198 |
| Likely benign | 11 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1067938 | NM_001007228.2(SPOP):c.257T>C (p.Leu86Pro) | Likely pathogenic |
| 1341399 | NM_001007228.2(SPOP):c.79-1G>C | Likely pathogenic |
| 1685452 | NM_001007228.2(SPOP):c.312C>A (p.Phe104Leu) | Likely pathogenic |
| 2500332 | NM_001007228.2(SPOP):c.352G>A (p.Glu118Lys) | Likely pathogenic |
| 2584445 | NM_001007228.2(SPOP):c.468_469insAA (p.Leu157fs) | Likely pathogenic |
| 3773986 | NM_001007228.2(SPOP):c.622G>T (p.Gly208Cys) | Likely pathogenic |
| 830357 | NM_001007228.2(SPOP):c.395G>T (p.Gly132Val) | Likely pathogenic |
| 830360 | NM_001007228.2(SPOP):c.248A>G (p.Tyr83Cys) | Likely pathogenic |
SpliceAI
2574 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:49601863:A:AC | donor_gain | 1.0000 |
| 17:49601864:C:CC | donor_gain | 1.0000 |
| 17:49601883:G:GA | donor_gain | 1.0000 |
| 17:49602004:CATA:C | acceptor_gain | 1.0000 |
| 17:49602006:TA:T | acceptor_gain | 1.0000 |
| 17:49602008:C:CC | acceptor_gain | 1.0000 |
| 17:49607244:TCTTA:T | donor_loss | 1.0000 |
| 17:49607245:CTTA:C | donor_loss | 1.0000 |
| 17:49607246:TTA:T | donor_loss | 1.0000 |
| 17:49607247:TA:T | donor_loss | 1.0000 |
| 17:49607248:ACCTT:A | donor_loss | 1.0000 |
| 17:49607249:C:CT | donor_loss | 1.0000 |
| 17:49607368:CGATT:C | acceptor_gain | 1.0000 |
| 17:49607371:TT:T | acceptor_gain | 1.0000 |
| 17:49607373:C:CC | acceptor_gain | 1.0000 |
| 17:49611278:A:T | donor_loss | 1.0000 |
| 17:49611279:CCT:C | donor_loss | 1.0000 |
| 17:49611453:CTCAC:C | acceptor_gain | 1.0000 |
| 17:49611454:TCAC:T | acceptor_gain | 1.0000 |
| 17:49611455:CAC:C | acceptor_gain | 1.0000 |
| 17:49611455:CACC:C | acceptor_gain | 1.0000 |
| 17:49611456:AC:A | acceptor_gain | 1.0000 |
| 17:49611457:CC:C | acceptor_gain | 1.0000 |
| 17:49611458:CTGTG:C | acceptor_loss | 1.0000 |
| 17:49611460:G:GC | acceptor_gain | 1.0000 |
| 17:49618976:CTCA:C | donor_loss | 1.0000 |
| 17:49618977:TCAC:T | donor_loss | 1.0000 |
| 17:49618978:CACCT:C | donor_loss | 1.0000 |
| 17:49618979:A:AC | donor_gain | 1.0000 |
| 17:49618980:C:CC | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000010363 (17:49621346 G>A), RS1000062024 (17:49679936 T>C,G), RS1000079345 (17:49628108 G>A), RS1000085880 (17:49627998 T>G), RS1000148417 (17:49629447 T>G), RS1000149010 (17:49608474 G>A), RS1000151724 (17:49629448 C>A,G), RS1000154146 (17:49673048 A>C), RS1000182079 (17:49608900 C>CAT), RS1000235080 (17:49654682 G>A), RS1000250452 (17:49635614 T>C), RS1000336256 (17:49601779 C>T), RS1000336327 (17:49642227 G>C), RS1000339044 (17:49647734 G>A), RS1000345092 (17:49678264 T>G)
Disease associations
OMIM: gene MIM:602650 | disease phenotypes: MIM:618828, MIM:618829
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with microcephaly and dysmorphic facies | Strong | Autosomal dominant |
| neurodevelopmental disorder | Strong | Autosomal dominant |
| neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies | Strong | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with microcephaly and dysmorphic facies | Moderate | AD |
| neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies | Definitive | AD |
Mondo (4): prostate cancer (MONDO:0008315), neurodevelopmental disorder with microcephaly and dysmorphic facies (MONDO:0032942), neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies (MONDO:0032943), neurodevelopmental disorder (MONDO:0700092)
Orphanet (3): Familial prostate cancer (Orphanet:1331), Microcephaly-hearing loss-facial dysmorphism-intellectual disability syndrome (Orphanet:662179), Macrocephaly-congenital heart disease-facial dysmorphism-intellectual disability syndrome (Orphanet:662175)
HPO phenotypes
72 total (30 of 72 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000218 | High palate |
| HP:0000233 | Thin vermilion border |
| HP:0000248 | Brachycephaly |
| HP:0000286 | Epicanthus |
| HP:0000294 | Low anterior hairline |
| HP:0000307 | Pointed chin |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000325 | Triangular face |
| HP:0000341 | Narrow forehead |
| HP:0000347 | Micrognathia |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000391 | Thickened helices |
| HP:0000411 | Protruding ear |
| HP:0000414 | Bulbous nose |
| HP:0000426 | Prominent nasal bridge |
| HP:0000448 | Prominent nose |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
| HP:0000490 | Deeply set eye |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000506 | Telecanthus |
| HP:0000527 | Long eyelashes |
| HP:0000609 | Optic nerve hypoplasia |
| HP:0000637 | Long palpebral fissure |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001942_17 | Prostate cancer | 2.000000e-09 |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (5): CHEMBL4523140 (SINGLE PROTEIN), CHEMBL4523606 (PROTEIN-PROTEIN INTERACTION), CHEMBL6195607 (PROTEIN-PROTEIN INTERACTION), CHEMBL6195608 (PROTEIN-PROTEIN INTERACTION), CHEMBL6195609 (PROTEIN-PROTEIN INTERACTION)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
6 potent at pChembl≥5 of 25 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.24 | IC50 | 580 | nM | CHEMBL5432865 |
| 5.81 | Kd | 1540 | nM | CHEMBL5432865 |
| 5.35 | IC50 | 4510 | nM | CHEMBL6190856 |
| 5.27 | IC50 | 5350 | nM | CHEMBL5429033 |
| 5.20 | IC50 | 6330 | nM | CHEMBL5439373 |
| 5.15 | IC50 | 7030 | nM | CHEMBL5397319 |
PubChem BioAssay actives
5 with measured affinity, of 123 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (6R,7R)-7-[[5-(chloromethyl)furan-2-carbonyl]amino]-3-ethenyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid | 2006983: Inhibition of GST-tagged human SPOP MATH domain (28 to 166 residues) expressed in Escherichia coli BL21 CodonPlus (DE3)-RIPL cells using FITC-LACDEVTSTTSSSTA peptide as substrate assessed as inhibition of substrate binding to SPOP preincubated with compound for 30 mins followed by substrate addition and measured immediately by fluorescence polarization assay | ic50 | 0.5800 | uM |
| (6R,7R)-7-[[5-[(4-bromo-2-chlorophenoxy)methyl]furan-2-carbonyl]amino]-3-ethenyl-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid | 2006983: Inhibition of GST-tagged human SPOP MATH domain (28 to 166 residues) expressed in Escherichia coli BL21 CodonPlus (DE3)-RIPL cells using FITC-LACDEVTSTTSSSTA peptide as substrate assessed as inhibition of substrate binding to SPOP preincubated with compound for 30 mins followed by substrate addition and measured immediately by fluorescence polarization assay | ic50 | 5.3500 | uM |
| (6R,7R)-3-ethenyl-8-oxo-7-[[5-(phenoxymethyl)furan-2-carbonyl]amino]-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid | 2006983: Inhibition of GST-tagged human SPOP MATH domain (28 to 166 residues) expressed in Escherichia coli BL21 CodonPlus (DE3)-RIPL cells using FITC-LACDEVTSTTSSSTA peptide as substrate assessed as inhibition of substrate binding to SPOP preincubated with compound for 30 mins followed by substrate addition and measured immediately by fluorescence polarization assay | ic50 | 6.3300 | uM |
| (6R,7R)-3-ethenyl-7-[[5-[(4-fluorophenoxy)methyl]furan-2-carbonyl]amino]-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid | 2006983: Inhibition of GST-tagged human SPOP MATH domain (28 to 166 residues) expressed in Escherichia coli BL21 CodonPlus (DE3)-RIPL cells using FITC-LACDEVTSTTSSSTA peptide as substrate assessed as inhibition of substrate binding to SPOP preincubated with compound for 30 mins followed by substrate addition and measured immediately by fluorescence polarization assay | ic50 | 7.0300 | uM |
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 2 |
| TAK-243 | increases sumoylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | increases methylation | 1 |
| arsenite | affects binding, increases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Glyphosate | decreases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Valproic Acid | decreases expression | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Cadmium Chloride | decreases expression | 1 |
| Volatile Organic Compounds | affects cotreatment, increases oxidation | 1 |
ChEMBL screening assays
82 unique, capped per target: 82 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4406284 | Binding | Inhibition of SPOP signalling in human OS-RC2 cells assessed as accumulation of DUSP7 incubated for 12 hrs by Western blot analysis | Structure-Activity Relationship of SPOP Inhibitors against Kidney Cancer. — J Med Chem |
Cellosaurus cell lines
6 cell lines: 5 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2H7 | Abcam HeLa SPOP KO | Cancer cell line | Female |
| CVCL_D7IV | Ubigene 5637 SPOP KO | Cancer cell line | Male |
| CVCL_E1FU | Abcam HEK293 SPOP KO | Transformed cell line | Female |
| CVCL_E1KX | HyCyte HeLa KO-hSPOP | Cancer cell line | Female |
| CVCL_VL77 | FDOV1 | Cancer cell line | Female |
| CVCL_XT78 | HAP1 SPOP (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
502 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder with microcephaly and dysmorphic facies, neurodevelopmental disorder, neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neurodevelopmental disorder, neurodevelopmental disorder with microcephaly and dysmorphic facies, neurodevelopmental disorder with relative macrocephaly and with or without cardiac or endocrine anomalies, prostate cancer, prostate carcinoma