SPOPL-DT

Summary

SPOPL-DT (SPOPL divergent transcript, HGNC:55802) is a long non-coding RNA gene on chromosome 2q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55802
Approved symbol	SPOPL-DT
Name	SPOPL divergent transcript
Location	2q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228043
Ensembl biotype	lncRNA
Entrez	105373637
RNAcentral	URS00026A19FD — lncRNA, 10195 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000414911, ENST00000431985, ENST00000843065, ENST00000843066, ENST00000843067, ENST00000843068, ENST00000843069, ENST00000843070, ENST00000843071, ENST00000843072, ENST00000843073, ENST00000843074, ENST00000843075, ENST00000843076, ENST00000843077, ENST00000843078

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414911 — 5 exons

Exon	Start	End
ENSE00001605259	138500755	138500880
ENSE00001619001	138436473	138436613
ENSE00001690368	138501319	138501674
ENSE00001706957	138434375	138434541
ENSE00001804909	138477170	138477246

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 82.60.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.60	gold quality
colonic epithelium	UBERON:0000397	80.49	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.93	gold quality
bone marrow cell	CL:0002092	65.81	silver quality
ventricular zone	UBERON:0003053	61.36	gold quality
ganglionic eminence	UBERON:0004023	61.22	gold quality
skeletal muscle tissue	UBERON:0001134	60.75	gold quality
monocyte	CL:0000576	58.66	gold quality
leukocyte	CL:0000738	58.36	gold quality
islet of Langerhans	UBERON:0000006	58.15	gold quality
bone marrow	UBERON:0002371	57.09	gold quality
calcaneal tendon	UBERON:0003701	56.73	gold quality
blood	UBERON:0000178	55.87	gold quality
urinary bladder	UBERON:0001255	55.78	gold quality
muscle tissue	UBERON:0002385	55.38	gold quality
stromal cell of endometrium	CL:0002255	55.17	silver quality
placenta	UBERON:0001987	54.91	gold quality
liver	UBERON:0002107	54.88	gold quality
popliteal artery	UBERON:0002250	54.74	gold quality
tibial artery	UBERON:0007610	54.67	gold quality
tonsil	UBERON:0002372	54.59	silver quality
gall bladder	UBERON:0002110	53.72	gold quality
lymph node	UBERON:0000029	53.30	gold quality
vermiform appendix	UBERON:0001154	52.99	gold quality
left coronary artery	UBERON:0001626	52.81	gold quality
pancreas	UBERON:0001264	52.78	gold quality
ascending aorta	UBERON:0001496	52.59	gold quality
thoracic aorta	UBERON:0001515	52.42	gold quality
subcutaneous adipose tissue	UBERON:0002190	52.31	gold quality
ectocervix	UBERON:0012249	52.25	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-GEOD-180759	yes	24309.48
E-ANND-3	no	3.66

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.