SPTA1
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Also known as EL2
Summary
SPTA1 (spectrin alpha, erythrocytic 1, HGNC:11272) is a protein-coding gene on chromosome 1q23.1, encoding Spectrin alpha chain, erythrocytic 1 (P02549). Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane.
This gene encodes a member of a family of molecular scaffold proteins that link the plasma membrane to the actin cytoskeleton and functions in the determination of cell shape, arrangement of transmembrane proteins, and organization of organelles. The encoded protein is primarily composed of 22 spectrin repeats which are involved in dimer formation. It forms a component of the erythrocyte plasma membrane. Mutations in this gene result in a variety of hereditary red blood cell disorders, including elliptocytosis-2, pyropoikilocytosis, and spherocytosis, type 3.
Source: NCBI Gene 6708 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hereditary spherocytosis type 3 (Definitive, GenCC) — +4 more curated relationships
- GWAS associations: 83
- Clinical variants (ClinVar): 1,531 total — 66 pathogenic, 109 likely-pathogenic
- Phenotypes (HPO): 44
- MANE Select transcript:
NM_003126
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11272 |
| Approved symbol | SPTA1 |
| Name | spectrin alpha, erythrocytic 1 |
| Location | 1q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | EL2 |
| Ensembl gene | ENSG00000163554 |
| Ensembl biotype | protein_coding |
| OMIM | 182860 |
| Entrez | 6708 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 7 retained_intron, 1 protein_coding_CDS_not_defined, 1 protein_coding
ENST00000461624, ENST00000465741, ENST00000481212, ENST00000484520, ENST00000485680, ENST00000492934, ENST00000498708, ENST00000643759, ENST00000647256
RefSeq mRNA: 1 — MANE Select: NM_003126
NM_003126
CCDS: CCDS41423
Canonical transcript exons
ENST00000643759 — 52 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001075888 | 158622983 | 158623192 |
| ENSE00001075889 | 158645495 | 158645594 |
| ENSE00001075891 | 158649856 | 158649947 |
| ENSE00001075892 | 158654611 | 158654748 |
| ENSE00001075895 | 158662702 | 158662945 |
| ENSE00001075897 | 158685108 | 158685347 |
| ENSE00001075899 | 158643322 | 158643425 |
| ENSE00001075901 | 158648509 | 158648653 |
| ENSE00001075904 | 158669408 | 158669563 |
| ENSE00001075906 | 158652467 | 158652653 |
| ENSE00001075907 | 158677690 | 158677834 |
| ENSE00001075908 | 158667858 | 158668062 |
| ENSE00001075911 | 158642814 | 158642976 |
| ENSE00001075914 | 158634543 | 158634675 |
| ENSE00001075916 | 158674540 | 158674675 |
| ENSE00001075921 | 158619222 | 158619334 |
| ENSE00001075924 | 158651367 | 158651468 |
| ENSE00001075925 | 158681527 | 158681667 |
| ENSE00001075927 | 158672059 | 158672196 |
| ENSE00001075931 | 158639582 | 158639686 |
| ENSE00001075935 | 158680583 | 158680729 |
| ENSE00001075939 | 158661287 | 158661409 |
| ENSE00001075941 | 158645188 | 158645385 |
| ENSE00001075943 | 158683371 | 158683496 |
| ENSE00001075947 | 158638033 | 158638241 |
| ENSE00001075949 | 158644253 | 158644396 |
| ENSE00001075951 | 158657477 | 158657694 |
| ENSE00001075954 | 158653274 | 158653425 |
| ENSE00001075956 | 158676141 | 158676295 |
| ENSE00001075959 | 158636641 | 158636761 |
| ENSE00001075963 | 158612817 | 158612961 |
| ENSE00001075965 | 158642411 | 158642542 |
| ENSE00001075967 | 158656564 | 158656656 |
| ENSE00001075969 | 158669709 | 158669786 |
| ENSE00001075970 | 158635913 | 158636034 |
| ENSE00001075971 | 158620170 | 158620466 |
| ENSE00001075972 | 158674329 | 158674430 |
| ENSE00001075973 | 158647539 | 158647720 |
| ENSE00001075974 | 158666316 | 158666497 |
| ENSE00001446421 | 158626839 | 158627007 |
| ENSE00001446423 | 158610704 | 158611389 |
| ENSE00001659491 | 158671343 | 158671453 |
| ENSE00001832787 | 158686494 | 158686715 |
| ENSE00002340408 | 158618039 | 158618056 |
| ENSE00003479963 | 158617537 | 158617588 |
| ENSE00003519778 | 158613721 | 158613867 |
| ENSE00003528016 | 158627625 | 158627723 |
| ENSE00003562694 | 158626146 | 158626222 |
| ENSE00003612806 | 158639870 | 158640007 |
| ENSE00003628015 | 158615216 | 158615403 |
| ENSE00003676402 | 158614253 | 158614306 |
| ENSE00003705440 | 158678401 | 158678534 |
Expression profiles
Bgee: expression breadth ubiquitous, 147 present calls, max score 97.94.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 2.6160 / max 1749.9717, expressed in 130 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 15352 | 0.9642 | 71 |
| 15355 | 0.7955 | 93 |
| 15353 | 0.3631 | 52 |
| 15354 | 0.2061 | 36 |
| 15351 | 0.1951 | 37 |
| 15348 | 0.0577 | 11 |
| 15346 | 0.0223 | 3 |
| 15345 | 0.0119 | 4 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trabecular bone tissue | UBERON:0002483 | 97.94 | gold quality |
| bone marrow | UBERON:0002371 | 93.78 | gold quality |
| bone marrow cell | CL:0002092 | 92.00 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.97 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 76.95 | gold quality |
| adrenal tissue | UBERON:0018303 | 73.02 | gold quality |
| monocyte | CL:0000576 | 66.45 | gold quality |
| mononuclear cell | CL:0000842 | 66.18 | gold quality |
| leukocyte | CL:0000738 | 65.02 | gold quality |
| blood | UBERON:0000178 | 63.97 | gold quality |
| right testis | UBERON:0004534 | 63.48 | gold quality |
| left testis | UBERON:0004533 | 63.26 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 62.87 | gold quality |
| spleen | UBERON:0002106 | 62.30 | gold quality |
| testis | UBERON:0000473 | 62.02 | gold quality |
| sperm | CL:0000019 | 60.43 | silver quality |
| male germ cell | CL:0000015 | 59.78 | gold quality |
| ganglionic eminence | UBERON:0004023 | 56.96 | gold quality |
| decidua | UBERON:0002450 | 56.55 | gold quality |
| skin of hip | UBERON:0001554 | 56.51 | silver quality |
| amniotic fluid | UBERON:0000173 | 55.24 | gold quality |
| granulocyte | CL:0000094 | 53.97 | gold quality |
| embryo | UBERON:0000922 | 53.15 | gold quality |
| muscle of leg | UBERON:0001383 | 52.75 | gold quality |
| gastrocnemius | UBERON:0001388 | 52.55 | gold quality |
| endometrium epithelium | UBERON:0004811 | 52.44 | gold quality |
| hair follicle | UBERON:0002073 | 52.43 | gold quality |
| omental fat pad | UBERON:0010414 | 52.24 | gold quality |
| peritoneum | UBERON:0002358 | 52.21 | gold quality |
| tibialis anterior | UBERON:0001385 | 52.06 | silver quality |
Single-cell (SCXA)
Detected in 7 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10432 | yes | 177.64 |
| E-MTAB-8205 | yes | 173.43 |
| E-CURD-112 | yes | 77.43 |
| E-MTAB-10042 | yes | 32.87 |
| E-MTAB-9388 | yes | 8.42 |
| E-ANND-3 | yes | 7.65 |
| E-MTAB-9067 | yes | 4.59 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, BCL3, DLX4, E2F2, E2F8, ETS1, FLI1, FOXO3, GATA1, GATA2, IKZF1, IRF6, JUN, KAT7, KLF1, LMO2, MAFB, MYB, MYC, NFE2, NFKB, NR3C1, NRF1, POU2F1, SATB2, SMAD7, SOX6, SP1, SPI1, STAT5A, TAL1, TCF3, TFCP2, YY1, ZFPM1, ZIC2, ZNF148, ZNF354C
miRNA regulators (miRDB)
19 targeting SPTA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-1290 | 99.59 | 69.90 | 2079 |
| HSA-MIR-141-5P | 99.57 | 67.86 | 897 |
| HSA-MIR-5689 | 99.50 | 71.26 | 1154 |
| HSA-MIR-582-5P | 99.47 | 70.79 | 2635 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-3606-3P | 99.11 | 69.84 | 3254 |
| HSA-MIR-155-3P | 99.03 | 67.99 | 924 |
| HSA-MIR-5699-5P | 97.36 | 67.03 | 1014 |
| HSA-MIR-6851-3P | 95.73 | 65.11 | 688 |
| HSA-MIR-3610 | 93.97 | 64.11 | 73 |
Literature-anchored findings (GeneRIF, showing 40)
- identification and characterization of the gene promoter; requires GATA-1- and NF-E2-binding proteins to direct high level expression in erythroid cells in vitro. (PMID:12196550)
- Quantitative analysis of erythrocyte membrane proteins revealed increase in alpha-spectrin from patients with homozygous and heterozygous forms of beta-thalassemia. (PMID:15310273)
- a region 3’ of the alpha-spectrin core promoter contains a GATA-1-dependent positive regulatory element that is required in its proper genomic orientation (PMID:15456760)
- analysis of erythroid alpha and beta spectrin chaperone activity and prodan binding (PMID:15492010)
- Ubiquitination of alpha-spectrin does not regulate heterodimer formation. (PMID:15795915)
- splicing mutation in hereditary pyropoikilocytosis kindred (PMID:16150946)
- We found that cysteine 2071 & cysteine 2100 are critical for alpha-spectrin (2005-2415) E2/E3 activity; also demonstrated that both Cys2071 & Cys2100 are capable of transferring ubiquitin from an E1 enzyme to target sites within alpha-spectrin (2005-2415) (PMID:16171554)
- the interaction of the alphaII-spectrin SH3 domain with EVL (PMID:16336193)
- These results suggest a role for spectrin in providing a dynamic and reversible signaling platform to the specific domains of the plasma membrane in response to stimulation of GPCR. (PMID:16551696)
- Results provide evidence that protein degradation of alphaII-spectrin is a reliable marker of severe traumatic brain injury (TBI) in humans and that both necrotic and apoptotic cell death mechanisms are activated in humans following a severe TBI. (PMID:16841024)
- REVIEW: Culture studies of Plasmodium falciparum in elliptocytes bearing such elliptocytogenic alleles of spectrin showed that these alleles are supplementary genetic factors of malaria resistance (PMID:17414207)
- The absence of particular spectrin isoforms may correlate with transformation or aggressive biologic behavior for some lymphoma subtypes. (PMID:17885671)
- analysis of the conformational change of erythroid alpha-spectrin at the tetramerization site upon binding beta-spectrin (PMID:17905835)
- This model supports the hypothesis that initial docking of the correct alpha and beta repeats from among many very similar repeats in both subunits is driven primarily by long range electrostatic interactions. (PMID:17977835)
- All alpha0 HE/HPP mutations studied here appear to exert their destabilizing effects through molecular recognition rather than structural mechanisms. (PMID:18218854)
- Erythrocytes from most jereditary pyropoikilocytosis (inherited hemolytic anemia) exhibit abnormalities in the alpha-spectrin gene. (PMID:18815189)
- exon 1’ and intron 1’ are excellent candidate regions for mutations in patients with spectrin-linked hemolytic anemia (PMID:19008453)
- The L49F mutation in alpha erythroid spectrin leads to an unstable triple helical bundle of alpha beta-spectrin partial domains, and thus unstable tetramers. (PMID:19593814)
- The functional roles of residues 21-43 and 55-59 in the alpha-spectrin N-terminal region in forming tetramers were determined;mutations may also introduce abnormalities to erythrocytes. (PMID:19747366)
- The data show that the alpha-spectrin EF domain greatly amplifies the function of the beta-spectrin actin-binding domain in forming the spectrin-actin-4.1R complex. (PMID:20585040)
- lipid rafts are associated with the spectrin skeleton in human erythrocytes (PMID:20807499)
- Results suggest that it is possible for cellular proteins to differentially associate with the C-termini of different beta-spectrin isoforms to regulate alpha- and beta-spectrin association to form functional spectrin tetramers. (PMID:21412925)
- analysis of glycosylation of erythrocyte spectrin and its modification in visceral leishmaniasis (PMID:22164239)
- Further studies involving siRNA-mediated knockdowns of spectrin, adducin, or p4.1 revealed that those proteins are needed for efficient docking of enterohaemorrhagic Escherichia coli to host cells. (PMID:22197999)
- These data further suggest that residues 44 and 53, which are key players in the nucleation-condensation mechanism of folding, are also important triggers of the aggregation process. (PMID:22727745)
- The unusually slow, two-state kinetics of spectrin assembly in solution, was investigated. (PMID:23200054)
- In this review, we summarize recent findings concerning structure and function of spectrin together with its possible role in pathology. (PMID:23373410)
- Data show that transcription cofactor TAF3 is required for transcription of the alpha spectrin SPTA1 gene. (PMID:23935956)
- The common hereditary elliptocytosis-associated alpha-spectrin leucine260proline mutation perturbs erythrocyte membranes by stabilizing spectrin in the closed dimer conformation. (PMID:23974198)
- The heterozygous c.121C>T mutation of SPTA1 gene induces an amino acid change p.Arg41Trp in the alpha1 domain of the alpha-spectrin protein. (PMID:24003435)
- A novel exon 2 alpha spectrin mutation is identified in two families of European ancestry with hereditary pyropoikilocytosis. (PMID:24077844)
- In this review, we summarize the state of knowledge about interactions between spectrin and membrane lipids (PMID:24569979)
- Case Report: severe hemolytic jaundice and a phenotype of hereditary spherocytosis due alpha-spectrin mutations. (PMID:25277063)
- The authors demonstrate that the initial vacuolar membrane around internalized Babesia divergens is formed from protein and lipid components of the red blood cells plasma membrane, including band 3, glycophorin A and spectrin. (PMID:25628009)
- a new function for spectrins in the stability of invadosomes and the coupling between actin regulation and ECM degradation (PMID:25830635)
- The authors show that SUB1-mediated processing of MSP1 is important for parasite viability, the processing modifies the secondary structure of MSP1 and activates its capacity to bind spectrin. (PMID:26468747)
- A novel SPTA1 mutation (H54P) was identified in a case of hereditary elliptocytosis. (PMID:28694211)
- a novel HE case with a His54Pro mutation in the SPTA1 gene was reported. The results suggested that the His54Pro mutation influenced the role of erythrocyte membrane proteins without reducing its level of expression. (PMID:29484404)
- These findings suggest that band 3 and spectrin are potential targets of autoantibodies that may be relevant for P. vivax malaria-associated anemia. (PMID:29884876)
- Novel mutations in SPTA1 and SPTB identified by whole exome sequencing in eight Thai families with hereditary pyropoikilocytosis presenting with severe fetal and neonatal anaemia. (PMID:30198572)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Spta1 | ENSMUSG00000026532 |
| rattus_norvegicus | Spta1 | ENSRNOG00000003537 |
Paralogs (36): SYNE2 (ENSG00000054654), SPTB (ENSG00000070182), ACTN1 (ENSG00000072110), ACTN2 (ENSG00000077522), DSP (ENSG00000096696), DRP2 (ENSG00000102385), SPTBN1 (ENSG00000115306), MACF1 (ENSG00000127603), FLNC (ENSG00000128591), ACTN4 (ENSG00000130402), SYNE1 (ENSG00000131018), MICAL2 (ENSG00000133816), DTNA (ENSG00000134769), MICAL1 (ENSG00000135596), FLNB (ENSG00000136068), SPTBN5 (ENSG00000137877), DTNB (ENSG00000138101), GAS2L3 (ENSG00000139354), DST (ENSG00000151914), UTRN (ENSG00000152818), SPTBN4 (ENSG00000160460), CLMN (ENSG00000165959), PKHD1 (ENSG00000170927), SPTBN2 (ENSG00000173898), SYNE3 (ENSG00000176438), PLEC (ENSG00000178209), SMTNL2 (ENSG00000188176), FLNA (ENSG00000196924), SPTAN1 (ENSG00000197694), DMD (ENSG00000198947), PKHD1L1 (ENSG00000205038), DYTN (ENSG00000232125), MICAL3 (ENSG00000243156), ACTN3 (ENSG00000248746), EPPK1 (ENSG00000261150), GAS2L2 (ENSG00000270765)
Protein
Protein identifiers
Spectrin alpha chain, erythrocytic 1 — P02549 (reviewed: P02549)
Alternative names: Erythroid alpha-spectrin
All UniProt accessions (1): P02549
UniProt curated annotations — full annotation on UniProt →
Function. Spectrin is the major constituent of the cytoskeletal network underlying the erythrocyte plasma membrane. It associates with band 4.1 and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane.
Subunit / interactions. Composed of non-homologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers. Interacts with FASLG. Interacts with BCAM.
Subcellular location. Cytoplasm. Cytoskeleton. Cell cortex.
Disease relevance. Elliptocytosis 2 (EL2) [MIM:130600] A Rhesus-unlinked form of hereditary elliptocytosis, a genetically heterogeneous, autosomal dominant hematologic disorder. It is characterized by variable hemolytic anemia and elliptical or oval red cell shape. The disease is caused by variants affecting the gene represented in this entry. Hereditary pyropoikilocytosis (HPP) [MIM:266140] Autosomal recessive hematologic disorder characterized by hemolytic anemia, microspherocytosis, poikilocytosis, and an unusual thermal sensitivity of red cells. The disease is caused by variants affecting the gene represented in this entry. Spherocytosis 3 (SPH3) [MIM:270970] Spherocytosis is a hematologic disorder leading to chronic hemolytic anemia and characterized by numerous abnormally shaped erythrocytes which are generally spheroidal. SPH3 is characterized by severe hemolytic anemia. Inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. This complex is anchored to the cytoplasmic face of the plasma membrane via another protein, ankyrin, which binds to beta-spectrin and mediates the binding of the whole complex to a transmembrane protein band 3. The interaction of erythrocyte spectrin with other proteins through specific binding domains lead to the formation of an extensive subplasmalemmal meshwork which is thought to be responsible for the maintenance of the biconcave shape of human erythrocytes, for the regulation of plasma membrane components and for the maintenance of the lipid asymmetry of the plasma membrane.
Similarity. Belongs to the spectrin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P02549-1 | 1 | yes |
| P02549-2 | 2 |
RefSeq proteins (1): NP_003117* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001452 | SH3_domain | Domain |
| IPR002017 | Spectrin_repeat | Repeat |
| IPR002048 | EF_hand_dom | Domain |
| IPR011992 | EF-hand-dom_pair | Homologous_superfamily |
| IPR014837 | EF-hand_Ca_insen | Domain |
| IPR018159 | Spectrin/alpha-actinin | Repeat |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
Pfam: PF00018, PF00435, PF08726
UniProt features (96 total): sequence variant 38, repeat 20, helix 13, binding site 8, sequence conflict 6, domain 4, modified residue 2, strand 2, chain 1, splice variant 1, turn 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5J4O | X-RAY DIFFRACTION | 1.54 |
| 3LBX | X-RAY DIFFRACTION | 2.8 |
| 1OWA | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P02549-F1 | 76.74 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 2284; 2286; 2288; 2290; 2295; 2327; 2333; 2338
Post-translational modifications (2): 992, 1976
Function
Pathways and Gene Ontology
Reactome pathways
18 pathways
| ID | Pathway |
|---|---|
| R-HSA-375165 | NCAM signaling for neurite out-growth |
| R-HSA-445095 | Interaction between L1 and Ankyrins |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6807878 | COPI-mediated anterograde transport |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-199977 | ER to Golgi Anterograde Transport |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-422475 | Axon guidance |
| R-HSA-446203 | Asparagine N-linked glycosylation |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-5683057 | MAPK family signaling cascades |
| R-HSA-5684996 | MAPK1/MAPK3 signaling |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-948021 | Transport to the Golgi and subsequent modification |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 284 (showing top):
GOBP_REGULATION_OF_CELL_ACTIVATION, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, GOBP_REGULATION_OF_PROTEIN_POLYMERIZATION, GOBP_REGULATION_OF_CELL_MORPHOGENESIS, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_POLYMERIZATION, GOBP_LYMPHOCYTE_HOMEOSTASIS, GOBP_PLASMA_MEMBRANE_ORGANIZATION, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH, IVANOVA_HEMATOPOIESIS_MATURE_CELL, GOBP_NEGATIVE_REGULATION_OF_ACTIN_FILAMENT_DEPOLYMERIZATION, GOBP_TETRAPYRROLE_BIOSYNTHETIC_PROCESS, REACTOME_MEMBRANE_TRAFFICKING, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GNF2_ANK1
GO Biological Process (9): lymphocyte homeostasis (GO:0002260), porphyrin-containing compound biosynthetic process (GO:0006779), plasma membrane organization (GO:0007009), actin filament organization (GO:0007015), regulation of cell shape (GO:0008360), actin cytoskeleton organization (GO:0030036), hemopoiesis (GO:0030097), positive regulation of T cell proliferation (GO:0042102), actin filament capping (GO:0051693)
GO Molecular Function (6): structural constituent of cytoskeleton (GO:0005200), calcium ion binding (GO:0005509), actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (16): cytosol (GO:0005829), plasma membrane (GO:0005886), spectrin (GO:0008091), cytoplasmic side of plasma membrane (GO:0009898), spectrin-associated cytoskeleton (GO:0014731), actin cytoskeleton (GO:0015629), cell junction (GO:0030054), axon (GO:0030424), cortical actin cytoskeleton (GO:0030864), cuticular plate (GO:0032437), cell projection (GO:0042995), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cell cortex (GO:0005938), membrane (GO:0016020), cortical cytoskeleton (GO:0030863)
Reactome top-level categories
Rollup of top-14 pathways:
| Category | Pathways |
|---|---|
| Axon guidance | 2 |
| L1CAM interactions | 1 |
| MAPK1/MAPK3 signaling | 1 |
| ER to Golgi Anterograde Transport | 1 |
| Membrane Trafficking | 1 |
| Transport to the Golgi and subsequent modification | 1 |
| Vesicle-mediated transport | 1 |
| Nervous system development | 1 |
| Post-translational protein modification | 1 |
| Signal Transduction | 1 |
| MAPK family signaling cascades | 1 |
| Metabolism of proteins | 1 |
| Asparagine N-linked glycosylation | 1 |
| Developmental Biology | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cytoskeleton | 4 |
| cytoskeleton organization | 2 |
| cytoplasm | 2 |
| cell periphery | 2 |
| cortical actin cytoskeleton | 2 |
| leukocyte homeostasis | 1 |
| porphyrin-containing compound metabolic process | 1 |
| tetrapyrrole biosynthetic process | 1 |
| endomembrane system organization | 1 |
| membrane organization | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| regulation of cell morphogenesis | 1 |
| regulation of biological quality | 1 |
| actin filament-based process | 1 |
| cell development | 1 |
| T cell proliferation | 1 |
| regulation of T cell proliferation | 1 |
| positive regulation of lymphocyte proliferation | 1 |
| positive regulation of T cell activation | 1 |
| negative regulation of actin filament depolymerization | 1 |
| negative regulation of actin filament polymerization | 1 |
| structural molecule activity | 1 |
| metal ion binding | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| cation binding | 1 |
| membrane | 1 |
| protein-containing complex | 1 |
| plasma membrane | 1 |
| cytoplasmic side of membrane | 1 |
| neuron projection | 1 |
| actin cytoskeleton | 1 |
| cortical cytoskeleton | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| cell cortex | 1 |
Protein interactions and networks
STRING
1370 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SPTA1 | EPB41 | P11171 | 861 |
| SPTA1 | SPTBN1 | Q01082 | 820 |
| SPTA1 | SPTB | P11277 | 800 |
| SPTA1 | SLC4A1 | P02730 | 794 |
| SPTA1 | ANK1 | P16157 | 774 |
| SPTA1 | EPB42 | P16452 | 773 |
| SPTA1 | SPTBN5 | Q9NRC6 | 751 |
| SPTA1 | SPTBN4 | Q9H254 | 740 |
| SPTA1 | ANK3 | Q12955 | 738 |
| SPTA1 | RBFOX2 | O43251 | 666 |
| SPTA1 | ANK2 | Q01484 | 648 |
| SPTA1 | CD5L | O43866 | 617 |
| SPTA1 | ACTG1 | P02571 | 611 |
| SPTA1 | LRP1B | Q9NZR2 | 580 |
| SPTA1 | RHAG | Q02094 | 575 |
IntAct
64 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SPTA1 | SPTB | psi-mi:“MI:0407”(direct interaction) | 0.790 |
| SPTA1 | SPTB | psi-mi:“MI:0915”(physical association) | 0.790 |
| SPTB | SPTA1 | psi-mi:“MI:0407”(direct interaction) | 0.790 |
| SPTA1 | SPTBN1 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| SPTBN1 | SPTA1 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| KRT75 | SPTA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CIMAP1B | SPTA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BCKDK | SPTA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | TSHZ2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | TXN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | DGCR6L | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | PKP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | CCDC185 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | C21orf58 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | GADD45GIP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | ZNF326 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPTA1 | EXOSC5 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC4A1 | FLOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| SPTA1 | ABI1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| CBL | BCR/ABL fusion | psi-mi:“MI:0914”(association) | 0.460 |
| UBASH3B | BCR/ABL fusion | psi-mi:“MI:0914”(association) | 0.460 |
| SHC1 | BCR/ABL fusion | psi-mi:“MI:0914”(association) | 0.460 |
| ADAM10 | SPTA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FASLG | SPTA1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SPTA1 | PARP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (117): ANK1 (Biochemical Activity), SPTA1 (Affinity Capture-MS), SPTA1 (Co-crystal Structure), SPTA1 (Affinity Capture-MS), SMARCA4 (Affinity Capture-Western), HNRNPA2B1 (Affinity Capture-Western), SMARCA2 (Affinity Capture-Western), ERCC5 (Affinity Capture-Western), ERCC6 (Affinity Capture-Western), FANCA (Affinity Capture-Western), FANCD2 (Affinity Capture-Western), RAD50 (Affinity Capture-Western), BRIP1 (Affinity Capture-Western), ERCC4 (Affinity Capture-Western), ERCC3 (Affinity Capture-Western)
ESM2 similar proteins: A0A8M2BID5, A2CG49, D3ZEY0, D3ZHV2, E9Q557, E9Q8Q6, F1LMV6, F1M0Z1, G3V7L1, O15068, O60229, O60437, O75962, O97592, P02549, P10911, P11277, P11530, P11531, P11532, P11533, P15508, P15924, P30427, P46939, P97924, Q03001, Q0KL02, Q15149, Q1LUA6, Q4FZC9, Q5GN48, Q63406, Q64096, Q6ZMZ3, Q6ZP82, Q6ZWQ0, Q6ZWR6, Q86YR7, Q8NF91
Diamond homologs: A0JNJ1, A1CEK6, A1DFN5, A2QW93, A4RF61, A6QLK6, A7A261, F1LRS8, O35179, O35964, O43307, O74749, O75791, O75886, O88811, O89100, O93436, P02549, P07751, P09215, P09216, P10830, P13395, P16054, P16086, P16546, P23298, P24723, P28867, P29355, P32793, P34885, P38753, P43603, P53281, P62993, P62994, P70297, P87379, P97306
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| GATA1 | “up-regulates quantity by expression” | SPTA1 | “transcriptional regulation” |
| SPTA1 | “form complex” | “Erythrocytic spectrin” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 36 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by Receptor Tyrosine Kinases | 5 | 10.3× | 3e-03 |
| Axon guidance | 5 | 9.0× | 5e-03 |
| Nervous system development | 5 | 8.6× | 5e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| positive regulation of canonical NF-kappaB signal transduction | 5 | 12.1× | 7e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1531 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 66 |
| Likely pathogenic | 109 |
| Uncertain significance | 781 |
| Likely benign | 162 |
| Benign | 125 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1030628 | NM_003126.4(SPTA1):c.3163C>T (p.Gln1055Ter) | Pathogenic |
| 1033567 | NM_003126.4(SPTA1):c.4180del (p.Cys1394fs) | Pathogenic |
| 1162868 | NM_003126.4(SPTA1):c.3139C>T (p.Arg1047Ter) | Pathogenic |
| 1163657 | NM_003126.4(SPTA1):c.2671C>T (p.Arg891Ter) | Pathogenic |
| 12849 | NM_003126.4(SPTA1):c.135G>T (p.Arg45Ser) | Pathogenic |
| 12852 | NM_003126.4(SPTA1):c.121C>T (p.Arg41Trp) | Pathogenic |
| 12854 | NM_003126.4(SPTA1):c.82C>A (p.Arg28Ser) | Pathogenic |
| 12860 | NM_003126.4(SPTA1):c.2465-1G>A | Pathogenic |
| 12861 | NG_011474.1:g.11070_11071insSVAelement | Pathogenic |
| 12863 | NM_003126.2(SPTA1):c.5190_5310del | Pathogenic |
| 12865 | NM_003126.4(SPTA1):c.3188+5G>A | Pathogenic |
| 1330482 | NM_003126.4(SPTA1):c.1778del (p.Asp593fs) | Pathogenic |
| 1343229 | NM_003126.4(SPTA1):c.4519C>T (p.Arg1507Ter) | Pathogenic |
| 1413207 | NM_003126.4(SPTA1):c.1460_1463dup (p.Asp489fs) | Pathogenic |
| 1676967 | NM_003126.4(SPTA1):c.27del (p.Val10fs) | Pathogenic |
| 1676968 | NM_003126.4(SPTA1):c.4443-1G>A | Pathogenic |
| 1879102 | NM_003126.4(SPTA1):c.5530C>T (p.Arg1844Ter) | Pathogenic |
| 2026750 | NM_003126.4(SPTA1):c.4408G>T (p.Glu1470Ter) | Pathogenic |
| 2071594 | NM_003126.4(SPTA1):c.2920del (p.Glu974fs) | Pathogenic |
| 2090339 | NM_003126.4(SPTA1):c.1790G>A (p.Trp597Ter) | Pathogenic |
| 2428537 | NM_003126.4(SPTA1):c.5431C>T (p.Arg1811Ter) | Pathogenic |
| 2428579 | NM_003126.4(SPTA1):c.2954del (p.Leu985fs) | Pathogenic |
| 2438362 | NM_003126.4(SPTA1):c.4632dup (p.Ala1545fs) | Pathogenic |
| 2438367 | NM_003126.4(SPTA1):c.1120C>T (p.Arg374Ter) | Pathogenic |
| 2635281 | NM_003126.4(SPTA1):c.2319C>A (p.Cys773Ter) | Pathogenic |
| 2690495 | NM_003126.4(SPTA1):c.6335T>G (p.Leu2112Ter) | Pathogenic |
| 2698766 | NM_003126.4(SPTA1):c.2464G>T (p.Gly822Ter) | Pathogenic |
| 279900 | NM_003126.4(SPTA1):c.5950A>T (p.Arg1984Ter) | Pathogenic |
| 2820488 | NM_003126.4(SPTA1):c.4603C>T (p.Gln1535Ter) | Pathogenic |
| 2826237 | NM_003126.4(SPTA1):c.1055G>A (p.Trp352Ter) | Pathogenic |
SpliceAI
6392 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:158612811:TCGGA:T | donor_loss | 1.0000 |
| 1:158612812:CGGAC:C | donor_loss | 1.0000 |
| 1:158612813:GGAC:G | donor_loss | 1.0000 |
| 1:158612814:GACC:G | donor_loss | 1.0000 |
| 1:158612815:A:T | donor_loss | 1.0000 |
| 1:158612816:C:CA | donor_loss | 1.0000 |
| 1:158612958:CTTC:C | acceptor_gain | 1.0000 |
| 1:158612959:TTC:T | acceptor_gain | 1.0000 |
| 1:158612959:TTCC:T | acceptor_loss | 1.0000 |
| 1:158612960:TC:T | acceptor_gain | 1.0000 |
| 1:158612961:CC:C | acceptor_gain | 1.0000 |
| 1:158612962:C:CC | acceptor_gain | 1.0000 |
| 1:158613716:CCTA:C | donor_loss | 1.0000 |
| 1:158613717:CTAC:C | donor_loss | 1.0000 |
| 1:158613719:A:AT | donor_loss | 1.0000 |
| 1:158613719:ACCT:A | donor_gain | 1.0000 |
| 1:158613719:ACCTC:A | donor_gain | 1.0000 |
| 1:158613720:CCT:C | donor_gain | 1.0000 |
| 1:158613720:CCTC:C | donor_gain | 1.0000 |
| 1:158613720:CCTCC:C | donor_gain | 1.0000 |
| 1:158613722:T:TA | donor_gain | 1.0000 |
| 1:158613723:C:A | donor_gain | 1.0000 |
| 1:158613749:T:TA | donor_gain | 1.0000 |
| 1:158613863:AGTGT:A | acceptor_gain | 1.0000 |
| 1:158613864:GTGT:G | acceptor_gain | 1.0000 |
| 1:158613865:TGT:T | acceptor_gain | 1.0000 |
| 1:158613866:GT:G | acceptor_gain | 1.0000 |
| 1:158613867:TCTAA:T | acceptor_loss | 1.0000 |
| 1:158613868:C:CC | acceptor_gain | 1.0000 |
| 1:158613868:CTA:C | acceptor_loss | 1.0000 |
AlphaMissense
16084 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:158685289:C:G | R28P | 0.985 |
| 1:158611288:G:C | F2412L | 0.984 |
| 1:158611288:G:T | F2412L | 0.984 |
| 1:158611290:A:G | F2412L | 0.984 |
| 1:158639929:C:G | A1606P | 0.984 |
| 1:158611289:A:G | F2412S | 0.981 |
| 1:158639937:A:G | L1603P | 0.981 |
| 1:158639877:A:G | L1623P | 0.979 |
| 1:158612869:A:G | F2361S | 0.978 |
| 1:158652571:C:G | A1091P | 0.977 |
| 1:158676156:A:G | L366P | 0.977 |
| 1:158613811:A:G | L2300P | 0.976 |
| 1:158611385:A:G | L2380P | 0.974 |
| 1:158649861:A:C | F1188L | 0.973 |
| 1:158649861:A:T | F1188L | 0.973 |
| 1:158649863:A:G | F1188L | 0.973 |
| 1:158652609:A:G | L1078P | 0.973 |
| 1:158613823:A:G | F2296S | 0.971 |
| 1:158677821:C:G | A276P | 0.971 |
| 1:158685259:A:G | F38S | 0.971 |
| 1:158685269:A:C | Y35D | 0.971 |
| 1:158674663:A:C | F375L | 0.970 |
| 1:158674663:A:T | F375L | 0.970 |
| 1:158674665:A:G | F375L | 0.970 |
| 1:158685168:C:A | W68C | 0.970 |
| 1:158685168:C:G | W68C | 0.970 |
| 1:158657610:C:G | R891P | 0.969 |
| 1:158611362:A:G | C2388R | 0.968 |
| 1:158615237:A:G | L2256P | 0.968 |
| 1:158676210:A:G | L348P | 0.968 |
dbSNP variants (sampled 300 via entrez): RS1000001087 (1:158628435 G>T), RS1000012251 (1:158644136 CAAA>C,CA,CAA,CAAAA,CAAAAA,CAAAAAA,CAAAAAAA), RS1000071795 (1:158647213 C>G,T), RS1000162544 (1:158650189 A>C), RS1000237164 (1:158666734 G>A), RS1000244154 (1:158618919 A>G), RS1000262697 (1:158612703 G>A,C,T), RS1000283566 (1:158681723 C>T), RS1000335456 (1:158681913 A>T), RS1000411872 (1:158682981 A>G,T), RS1000432961 (1:158628207 T>C), RS1000445686 (1:158650524 G>A,T), RS1000479405 (1:158639419 C>T), RS1000486015 (1:158633835 G>T), RS1000492817 (1:158623657 C>A,T)
Disease associations
OMIM: gene MIM:182860 | disease phenotypes: MIM:130600, MIM:266140, MIM:270970, MIM:222700, MIM:616649, MIM:301107
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hereditary spherocytosis type 3 | Definitive | Autosomal recessive |
| elliptocytosis 2 | Strong | Autosomal dominant |
| pyropoikilocytosis, hereditary | Strong | Autosomal recessive |
| hereditary elliptocytosis | Supportive | Autosomal dominant |
| hereditary spherocytosis | Supportive | Autosomal dominant |
Mondo (11): elliptocytosis 2 (MONDO:0007533), pyropoikilocytosis, hereditary (MONDO:0009948), hereditary spherocytosis type 3 (MONDO:0010053), hereditary spherocytosis (MONDO:0019350), lysinuric protein intolerance (MONDO:0009109), hereditary spherocytosis type 2 (MONDO:0000913), hemolytic anemia (MONDO:0003664), intellectual developmental disorder, X-linked 111 (MONDO:0957203), familial hemolytic anemia (MONDO:0003689), anemia (MONDO:0002280), hereditary elliptocytosis (MONDO:0017319)
Orphanet (4): Hereditary elliptocytosis (Orphanet:288), Hereditary spherocytosis (Orphanet:822), Lysinuric protein intolerance (Orphanet:470), Hereditary pyropoikilocytosis (Orphanet:98867)
HPO phenotypes
44 total (30 of 44 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000952 | Jaundice |
| HP:0000980 | Pallor |
| HP:0001081 | Cholelithiasis |
| HP:0001251 | Ataxia |
| HP:0001324 | Muscle weakness |
| HP:0001510 | Growth delay |
| HP:0001723 | Restrictive cardiomyopathy |
| HP:0001744 | Splenomegaly |
| HP:0001789 | Hydrops fetalis |
| HP:0001877 | Abnormal erythrocyte morphology |
| HP:0001878 | Hemolytic anemia |
| HP:0001903 | Anemia |
| HP:0001923 | Reticulocytosis |
| HP:0001945 | Fever |
| HP:0001978 | Extramedullary hematopoiesis |
| HP:0001997 | Gout |
| HP:0002007 | Frontal bossing |
| HP:0002027 | Abdominal pain |
| HP:0002240 | Hepatomegaly |
| HP:0002904 | Hyperbilirubinemia |
| HP:0003265 | Neonatal hyperbilirubinemia |
| HP:0003270 | Abdominal distention |
| HP:0003326 | Myalgia |
| HP:0003546 | Exercise intolerance |
| HP:0004444 | Spherocytosis |
| HP:0004445 | Elliptocytosis |
| HP:0004446 | Stomatocytosis |
| HP:0004447 | Poikilocytosis |
GWAS associations
83 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000500_4 | Other erythrocyte phenotypes | 1.000000e-10 |
| GCST000803_1 | Glycated hemoglobin levels | 3.000000e-09 |
| GCST001765_34 | Red blood cell traits | 4.000000e-16 |
| GCST003542_29 | Night sleep phenotypes | 6.000000e-06 |
| GCST003598_53 | QRS duration | 1.000000e-06 |
| GCST003598_54 | QRS duration | 8.000000e-09 |
| GCST004602_17 | Mean corpuscular volume | 6.000000e-29 |
| GCST004602_18 | Mean corpuscular volume | 2.000000e-25 |
| GCST004602_19 | Mean corpuscular volume | 8.000000e-19 |
| GCST004605_55 | Mean corpuscular hemoglobin concentration | 2.000000e-52 |
| GCST004611_114 | High light scatter reticulocyte count | 2.000000e-10 |
| GCST004611_115 | High light scatter reticulocyte count | 1.000000e-62 |
| GCST004611_116 | High light scatter reticulocyte count | 3.000000e-30 |
| GCST004612_153 | High light scatter reticulocyte percentage of red cells | 3.000000e-10 |
| GCST004612_154 | High light scatter reticulocyte percentage of red cells | 7.000000e-58 |
| GCST004612_155 | High light scatter reticulocyte percentage of red cells | 4.000000e-28 |
| GCST004619_126 | Reticulocyte fraction of red cells | 5.000000e-16 |
| GCST004619_127 | Reticulocyte fraction of red cells | 1.000000e-151 |
| GCST004619_74 | Reticulocyte fraction of red cells | 3.000000e-47 |
| GCST004621_36 | Red cell distribution width | 3.000000e-23 |
| GCST004621_37 | Red cell distribution width | 7.000000e-23 |
| GCST004622_136 | Reticulocyte count | 2.000000e-16 |
| GCST004622_137 | Reticulocyte count | 2.000000e-159 |
| GCST004622_138 | Reticulocyte count | 3.000000e-50 |
| GCST004627_129 | Lymphocyte count | 9.000000e-16 |
| GCST004628_132 | Immature fraction of reticulocytes | 3.000000e-09 |
| GCST004630_14 | Mean corpuscular hemoglobin | 4.000000e-10 |
| GCST004633_96 | Neutrophil percentage of white cells | 4.000000e-11 |
| GCST005992_2 | Mean corpuscular hemoglobin concentration | 1.000000e-14 |
| GCST006011_90 | Mean corpuscular volume | 9.000000e-11 |
EFO canonical traits (17, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0004541 | HbA1c measurement |
| EFO:0007986 | reticulocyte count |
| EFO:0009188 | Red cell distribution width |
| EFO:0004587 | lymphocyte count |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0007990 | neutrophil percentage of leukocytes |
| EFO:0007629 | hemoglobin A1 measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0009473 | hemolysis |
| EFO:0004531 | urate measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0005091 | monocyte count |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007984 | platelet component distribution width |
| EFO:0004305 | erythrocyte count |
MeSH disease descriptors (9)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000740 | Anemia | C15.378.050 |
| D000743 | Anemia, Hemolytic | C15.378.050.141 |
| D000745 | Anemia, Hemolytic, Congenital | C15.378.050.141.150; C16.320.070 |
| D004612 | Elliptocytosis, Hereditary | C15.378.050.141.150.365; C16.320.070.365 |
| D013103 | Spherocytosis, Hereditary | C15.378.050.141.150.785; C16.320.070.785 |
| C565058 | Elliptocytosis 2 (supp.) | |
| C562687 | Lysinuric Protein Intolerance (supp.) | |
| C563004 | Pyropoikilocytosis, Hereditary (supp.) | |
| C567489 | Spherocytosis, Type 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2106089 | SPTA1 | 0.00 | 0 |
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression | 2 |
| bisphenol A | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| 4-phenylenediamine | increases expression | 1 |
| nickel sulfate | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| (E)-4-((2-N-(4-methoxybenzenesulfonyl)amino)stilbazole)1-oxide | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| Benzo(a)pyrene | increases mutagenesis | 1 |
| Dinitrochlorobenzene | increases expression | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression, affects cotreatment | 1 |
| Naphthoquinones | increases expression | 1 |
| Oxygen | increases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| tert-Butylhydroperoxide | affects binding, increases degradation | 1 |
Cellosaurus cell lines
32 cell lines: 32 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0561 | TK6 | Transformed cell line | Male |
| CVCL_2733 | TK6TGR | Transformed cell line | Male |
| CVCL_2761 | WIL2 NS | Transformed cell line | Male |
| CVCL_2762 | WIL2.NS.6TG | Transformed cell line | Male |
| CVCL_3796 | SKW 6.4 | Transformed cell line | Male |
| CVCL_3809 | WIL2 S | Transformed cell line | Male |
| CVCL_6416 | LTR228 | Transformed cell line | Male |
| CVCL_6544 | WIL2 | Transformed cell line | Male |
| CVCL_6741 | WI-L2-729HF2 | Transformed cell line | Male |
| CVCL_6742 | WTK-1 | Transformed cell line | Male |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05777993 | PHASE4 | ENROLLING_BY_INVITATION | A Study to Provide Continued Access to Mitapivat for Participants Who Previously Completed an Agios-Sponsored Mitapivat Study |
| NCT00003398 | PHASE4 | COMPLETED | Bone Marrow Transplantation in Treating Patients With Hematologic Cancer |
| NCT00022386 | PHASE4 | COMPLETED | Epoetin Alfa in Treating Chemotherapy-Related Anemia in Women With Stage I, Stage II, or Stage III Breast Cancer |
| NCT00046969 | PHASE4 | COMPLETED | Epoetin Beta in Treating Anemia in Patients With Cervical Cancer |
| NCT00111995 | PHASE4 | COMPLETED | Evaluating Aranesp® for the Treatment of Anemia in African-American Subjects With Chronic Renal Failure (CRF) Receiving Hemodialysis |
| NCT00117039 | PHASE4 | COMPLETED | A Study to Evaluate the Effectiveness of Aranesp® for Cancer Patients With Anemia |
| NCT00117065 | PHASE4 | COMPLETED | Study of Transplant Related Anemia Treated With Aranesp® (STRATA) |
| NCT00117117 | PHASE4 | COMPLETED | A Study to Assess Symptom Burden in Subjects With Nonmyeloid Malignancies Receiving Chemotherapy and Aranesp® |
| NCT00126334 | PHASE4 | COMPLETED | Conservative Versus Liberal Red Cell Transfusion in Myocardial Infarction Trial: The CRIT Pilot |
| NCT00153868 | PHASE4 | COMPLETED | A Web-based Study of Quality of Life Benefits Associated Aranesp in Anemic Patients With Cancer |
| NCT00168948 | PHASE4 | UNKNOWN | Intermittent Antimalaria Treatment With SP in African Children |
| NCT00173706 | PHASE4 | UNKNOWN | Evaluation of the Effects of L-Carnitine Injection in Patients Undergoing Hemodialysis |
| NCT00194857 | PHASE4 | TERMINATED | Treatment of Anemia and Neutropenia in HIV/HCV Coinfected Patients Treated With Pegylated Interferon and Ribavirin |
| NCT00204334 | PHASE4 | COMPLETED | Effects of Anemia Correction on Vascular and Monocyte Function in Renal Transplant Recipients |
| NCT00206739 | PHASE4 | COMPLETED | Intermittent Treatment With Sulfadoxine-pyrimethamine for Malaria Control in Infants |
| NCT00211120 | PHASE4 | TERMINATED | Correction of Hemoglobin and Outcomes in Renal Insufficiency (CHOIR) |
| NCT00216541 | PHASE4 | COMPLETED | A Study of the Safety and Effectiveness of Epoetin Alfa on Hemoglobin Levels and Blood Transfusions in Cancer Patients Receiving Chemotherapy |
| NCT00223938 | PHASE4 | TERMINATED | Study of the Efficacy and Safety of Ferrlecit in the Maintenance Dosing in Hemodialysis Patients. |
| NCT00223964 | PHASE4 | COMPLETED | Study of the Efficacy of Two Doses of Ferrlecit in the Treatment of Iron Deficiency in Pediatric Hemodialysis Patients |
| NCT00224003 | PHASE4 | COMPLETED | Study of the Safety and Efficacy of Ferrlecit® Maintenance Dosing in Pediatric Hemodialysis Patients |
| NCT00224068 | PHASE4 | COMPLETED | Effect of Iron Therapy as an Adjunct to Epoetin Alfa in the Anemia of Cancer Chemotherapy |
| NCT00239642 | PHASE4 | COMPLETED | Safety and Efficacy of Iron Sucrose in Children |
| NCT00247507 | PHASE4 | UNKNOWN | The Effects of Acetylcysteine on Alleviating Damage of Oxidative Stress in Hemodialysis Patients |
| NCT00248716 | PHASE4 | UNKNOWN | Treatment of Anemia in the 2nd Year of Life. Comparison of the Efficacy of Two Different Iron Preparations. |
| NCT00283465 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Treatment With Epoetin Alfa on Hemoglobin Levels, Red Blood Cell Transfusions, and Quality of Life in Patients With Cancer Receiving Platinum-containing Chemotherapy |
| NCT00312871 | PHASE4 | TERMINATED | Effects of Early Correction of Anemia in Patients With Chronic Renal Insufficiency |
| NCT00315484 | PHASE4 | COMPLETED | Hematologic Response of Epoetin Alfa (PROCRIT) Versus Darbepoetin Alfa (ARANESP) in Chemotherapy Induced Anemia |
| NCT00317902 | PHASE4 | COMPLETED | An Open-Label Study to Evaluate the Effect of Every Other Week PROCRIT� (Epoetin Alfa) Dosing (40,000-60,000 Units) On Maintaining Quality of Life and Target Hemoglobin Levels in Anemic HIV-Infected Patients (CHAMPS II) |
| NCT00335023 | PHASE4 | COMPLETED | Well Being of Obstetric Patients on Minimal Blood Transfusions |
| NCT00338468 | PHASE4 | TERMINATED | A Study to Assess Disability in Anemic Elderly Patients With Kidney Disease Receiving PROCRIT (Epoetin Alfa) |
| NCT00377481 | PHASE4 | COMPLETED | COMFORT Study: A Crossover Study of NeoRecormon (Epoetin Beta) and Darbepoetin Alfa in Patients With Renal Anemia. |
| NCT00396435 | PHASE4 | COMPLETED | Correction of Anaemia and Progression of Renal Failure on Transplanted Patients |
| NCT00401869 | PHASE4 | COMPLETED | The Effect of PROCRIT (Epoetin Alfa) on Postoperative Vigor and Handgrip Strength (VIGOR Study) |
| NCT00413101 | PHASE4 | COMPLETED | A Study of NeoRecormon (Epoetin Beta) in Patients With End Stage Renal Disease. |
| NCT00431496 | PHASE4 | COMPLETED | A Study of Cinacalcet to Improve Achievement of National Kidney Foundation Kidney Disease Outcomes Quality Initiative (K/DOQI) Targets in Patients With End Stage Renal Disease (ESRD) |
| NCT00437723 | PHASE4 | COMPLETED | A Study of NeoRecormon in Patients With Chronic Kidney Disease. |
| NCT00440063 | PHASE4 | TERMINATED | A Study of NeoRecormon (Epoetin Beta) in Patients With Renal Anemia. |
| NCT00470158 | PHASE4 | COMPLETED | Delivery of Iron and Zinc Supplements: Evaluation of Interaction Effect on Biochemical and Clinical Outcomes |
| NCT00479102 | PHASE4 | UNKNOWN | Prevention of Iron Deficiency in 2nd Year of Life |
| NCT00495365 | PHASE4 | TERMINATED | A Dose Conversion Study of Epoetin Alfa in Subjects With the Anemia of Chronic Kidney Disease. |
Related Atlas pages
- Associated diseases: elliptocytosis 2, pyropoikilocytosis, hereditary, hereditary spherocytosis type 3, hereditary elliptocytosis, hereditary spherocytosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anemia, elliptocytosis 2, familial hemolytic anemia, hemolytic anemia, hereditary elliptocytosis, hereditary spherocytosis, hereditary spherocytosis type 2, hereditary spherocytosis type 3, intellectual developmental disorder, X-linked 111, lysinuric protein intolerance, pyropoikilocytosis, hereditary