SPTBN2
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Summary
SPTBN2 (spectrin beta, non-erythrocytic 2, HGNC:11276) is a protein-coding gene on chromosome 11q13.2, encoding Spectrin beta chain, non-erythrocytic 2 (O15020). Probably plays an important role in neuronal membrane skeleton.
Spectrins are principle components of a cell’s membrane-cytoskeleton and are composed of two alpha and two beta spectrin subunits. The protein encoded by this gene (SPTBN2), is called spectrin beta non-erythrocytic 2 or beta-III spectrin. It is related to, but distinct from, the beta-II spectrin gene which is also known as spectrin beta non-erythrocytic 1 (SPTBN1). SPTBN2 regulates the glutamate signaling pathway by stabilizing the glutamate transporter EAAT4 at the surface of the plasma membrane. Mutations in this gene cause a form of spinocerebellar ataxia, SCA5, that is characterized by neurodegeneration, progressive locomotor incoordination, dysarthria, and uncoordinated eye movements.
Source: NCBI Gene 6712 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive spinocerebellar ataxia 14 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 6
- Clinical variants (ClinVar): 1,407 total — 25 pathogenic, 28 likely-pathogenic
- Phenotypes (HPO): 45
- MANE Select transcript:
NM_006946
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11276 |
| Approved symbol | SPTBN2 |
| Name | spectrin beta, non-erythrocytic 2 |
| Location | 11q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000173898 |
| Ensembl biotype | protein_coding |
| OMIM | 604985 |
| Entrez | 6712 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 14 protein_coding, 5 retained_intron, 2 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000309996, ENST00000528051, ENST00000529997, ENST00000530665, ENST00000530775, ENST00000532650, ENST00000532902, ENST00000533211, ENST00000611817, ENST00000617502, ENST00000647510, ENST00000682471, ENST00000713737, ENST00000713738, ENST00000713739, ENST00000713740, ENST00000713741, ENST00000713742, ENST00000888769, ENST00000930530, ENST00000930531, ENST00000961397
RefSeq mRNA: 2 — MANE Select: NM_006946
NM_001411025, NM_006946
CCDS: CCDS8150, CCDS91511
Canonical transcript exons
ENST00000533211 — 38 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001187901 | 66688653 | 66688849 |
| ENSE00001187927 | 66690039 | 66690283 |
| ENSE00001187935 | 66691284 | 66691658 |
| ENSE00001187940 | 66692536 | 66692740 |
| ENSE00001187950 | 66692970 | 66693100 |
| ENSE00001187956 | 66693186 | 66693446 |
| ENSE00001187965 | 66693772 | 66693861 |
| ENSE00001187979 | 66694139 | 66694363 |
| ENSE00001188009 | 66698992 | 66699082 |
| ENSE00001188017 | 66699406 | 66699608 |
| ENSE00001188026 | 66700526 | 66701282 |
| ENSE00001188033 | 66701584 | 66701721 |
| ENSE00001188040 | 66704598 | 66705468 |
| ENSE00001188049 | 66705684 | 66705837 |
| ENSE00001188053 | 66707516 | 66707818 |
| ENSE00001188065 | 66708141 | 66708299 |
| ENSE00001188071 | 66708902 | 66709019 |
| ENSE00001188080 | 66710582 | 66710769 |
| ENSE00001188096 | 66713631 | 66713746 |
| ENSE00001188110 | 66714091 | 66714171 |
| ENSE00001188138 | 66715830 | 66715981 |
| ENSE00002140245 | 66728741 | 66729216 |
| ENSE00002188137 | 66682497 | 66686104 |
| ENSE00002430051 | 66710917 | 66711029 |
| ENSE00002452586 | 66698639 | 66698785 |
| ENSE00002485850 | 66714316 | 66714407 |
| ENSE00002515455 | 66715222 | 66715395 |
| ENSE00003622224 | 66689805 | 66689943 |
| ENSE00003650989 | 66696277 | 66696540 |
| ENSE00003663248 | 66689096 | 66689180 |
| ENSE00004021092 | 66688169 | 66688311 |
| ENSE00004021094 | 66721350 | 66721440 |
| ENSE00004021095 | 66687427 | 66687647 |
| ENSE00004021099 | 66721084 | 66721262 |
| ENSE00004021100 | 66686398 | 66686440 |
| ENSE00004021101 | 66686994 | 66687167 |
| ENSE00004021102 | 66687868 | 66687918 |
| ENSE00004021103 | 66688004 | 66688079 |
Expression profiles
Bgee: expression breadth ubiquitous, 238 present calls, max score 99.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.3978 / max 387.5476, expressed in 1014 samples.
FANTOM5 promoters (18 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 120838 | 2.3522 | 768 |
| 120833 | 2.1650 | 286 |
| 120846 | 2.0404 | 177 |
| 120840 | 0.6495 | 319 |
| 120847 | 0.5948 | 91 |
| 120832 | 0.4207 | 153 |
| 120837 | 0.4138 | 234 |
| 120843 | 0.3550 | 123 |
| 120844 | 0.2821 | 134 |
| 120839 | 0.2649 | 114 |
Top tissues by expression
293 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 99.10 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.75 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.67 | gold quality |
| right frontal lobe | UBERON:0002810 | 98.32 | gold quality |
| skin of leg | UBERON:0001511 | 98.05 | gold quality |
| skin of abdomen | UBERON:0001416 | 97.84 | gold quality |
| cortical plate | UBERON:0005343 | 97.68 | gold quality |
| cerebellum | UBERON:0002037 | 97.52 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.90 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.76 | gold quality |
| zone of skin | UBERON:0000014 | 96.74 | gold quality |
| left testis | UBERON:0004533 | 96.73 | gold quality |
| right testis | UBERON:0004534 | 96.73 | gold quality |
| metanephros cortex | UBERON:0010533 | 96.58 | gold quality |
| cingulate cortex | UBERON:0003027 | 96.30 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 96.28 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 96.18 | gold quality |
| nucleus accumbens | UBERON:0001882 | 95.99 | gold quality |
| esophagus mucosa | UBERON:0002469 | 95.57 | gold quality |
| amygdala | UBERON:0001876 | 95.32 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 95.12 | gold quality |
| gingiva | UBERON:0001828 | 94.86 | gold quality |
| gingival epithelium | UBERON:0001949 | 94.68 | gold quality |
| upper leg skin | UBERON:0004262 | 94.59 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 94.43 | gold quality |
| frontal cortex | UBERON:0001870 | 94.35 | gold quality |
| neocortex | UBERON:0001950 | 94.31 | gold quality |
| oral cavity | UBERON:0000167 | 94.11 | gold quality |
| mammalian vulva | UBERON:0000997 | 93.90 | gold quality |
| skin of hip | UBERON:0001554 | 93.61 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.98 |
| E-MTAB-6142 | no | 18.04 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
59 targeting SPTBN2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-221-5P | 99.86 | 65.45 | 1052 |
| HSA-MIR-8073 | 99.86 | 65.21 | 1118 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-548AU-3P | 99.70 | 68.22 | 1373 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-4690-5P | 99.65 | 66.24 | 813 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
Literature-anchored findings (GeneRIF, showing 31)
- beta-III spectrin (SPTBN2) mutations cause spinocerebellar ataxia type 5 (SCA5) in an 11-generation American kindred descended from President Lincoln’s grandparents and two additional families. (PMID:16429157)
- None of the Spinocerebellar Ataxia individuals tested had evidence for one of the known SCA5 mutations. (PMID:17940722)
- Adducin acting through spectrin provides a novel mechanism to regulate global properties of the lateral membrane of bronchial epithelial cells. (PMID:18003973)
- the crystal structure of the ankyrin-binding domain of human beta2-spectrin at 1.95 A resolution together with mutagenesis data identifying the binding surface for ankyrins on beta2-spectrin. (PMID:19098307)
- TGF-beta signaling, particularly beta2SP, plays a critical role in hepatocyte proliferation and transitional phenotype. (PMID:20131405)
- A mouse model lacking full-length beta-III spectrin reproduces features of human spinocerebellar ataxia type 5 including gait abnormalities, tremor, deteriorating motor coordination, Purkinje cell loss, and cerebellar atrophy. (PMID:20371805)
- Results suggest that it is possible for cellular proteins to differentially associate with the C-termini of different beta-spectrin isoforms to regulate alpha- and beta-spectrin association to form functional spectrin tetramers. (PMID:21412925)
- This review summarizes data showing that beta-III spectrin mutations are a novel cause of neurodegenerative disease, which may affect the stabilization or trafficking of membrane proteins. (PMID:21827906)
- two gene markers (CNKSR3 and SPTBN2) differentiate between aspirin-exacerbated respiratory disease and aspirin-tolerant asthma with a perfect discriminative power (PMID:22457146)
- A novel missense mutation within a SPTBN2 spectrin repeat encoded by exon 12 was found in a family with spinocerebellar ataxia type 5. (PMID:22843192)
- betaIII spectrin regulates the structural integrity and the secretory protein transport of the Golgi complex (PMID:23233669)
- the identification of SPARCA1 and normal heterozygous carriers of the stop codon in SPTBN2 provides insights into the mechanism of molecular dominance in SCA5 and demonstrates that the cell-specific repertoire of spectrin subunits (PMID:23236289)
- A homozygous SPTBN2 nonsense mutation underlying infantile ataxia and psychomotor delay in a human family. (PMID:23838597)
- Mutant beta-III spectrin causes mislocalization and dysfunction of mGluR1alpha at dendritic spines. (PMID:25057192)
- First Japanese spinocerebellar ataxia type 5 (SCA5) family with a novel heterozygous three-nucleotide in-frame deletion mutation in the SPTBN2 gene. (PMID:25142508)
- investigated using either targeted next generation sequencing or trio-based exome sequencing and were found to have mutations in three different genes, KCNC3, ITPR1 and SPTBN2 (PMID:25981959)
- TGF-beta/beta2-spectrin/CTCF-regulated tumor suppression in human stem cell disorder Beckwith-Wiedemann syndrome. (PMID:26784546)
- This study indicates that high-affinity actin binding of L253P beta-III-spectrin is a likely driver of neurodegeneration. (PMID:26883385)
- beta2-Spectrin, a TGF-beta mediator and signaling molecule, is cleaved and activated by caspase-3/7, consequently enhancing apoptosis and transcriptional control to determine cell fate upon liver damage. (PMID:26884715)
- Cardiac beta2-spectrin and downstream molecules are regulated in multiple forms of cardiovascular disease via Ca(2+)- and calpain-dependent proteolysis. (PMID:27106045)
- the proposed methodology is validated against betaII-spectrin protein, a brain injury validated biomarker (PMID:28112201)
- SCA5 missense mutation found in the spinocerebellar ataxia type 5 perturbs a closed-open structural equilibrium in the SCA5-actin-binding domain by lowering the energetic barrier between structural states. (PMID:29116080)
- Study reviews the previously reported SPTBN2 mutations and cases. Moreover, the novel homozygous missense variant (c.1572C>T; p.R414C) in two brothers adds up to the literature for the infantile-onset form of autosomal recessive ataxia associated with SPTBN2. (PMID:29196973)
- High SPTBN2 expression is associated with malignant peripheral nerve sheath tumors. (PMID:29596596)
- Study revealed that betaIII spectrin was weakly stained or lost in most poorly differentiated hepatocellular carcinoma (HCC) cases but retained moderate to strong stain in most cholangiocarcinoma (CC) cases. These findings suggest, for the first time, that betaIII spectrins could be helpful in differentiating poorly differentiated HCC from CC. (PMID:30798076)
- Two novel missense variants in SPTBN2 likely associated with spinocerebellar ataxia type 5. (PMID:33797620)
- Expanding the beta-III Spectrin-Associated Phenotypes toward Non-Progressive Congenital Ataxias with Neurodegeneration. (PMID:33801522)
- SPTBN2 Promotes the Progression of Thyroid Cancer by Accelerating G1/S Transition and Inhibiting Apoptosis. (PMID:35968508)
- Increased Actin Binding Is a Shared Molecular Consequence of Numerous SCA5 Mutations in beta-III-Spectrin. (PMID:37626910)
- SPTBN2 suppresses ferroptosis in NSCLC cells by facilitating SLC7A11 membrane trafficking and localization. (PMID:38241838)
- SPTBN2 regulated by miR-214-3p inhibits the proliferation and migration of colorectal cancer cells. (PMID:38279463)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | sptbn2 | ENSDARG00000053956 |
| mus_musculus | Sptbn2 | ENSMUSG00000067889 |
| rattus_norvegicus | Sptbn2 | ENSRNOG00000058842 |
Paralogs (36): SYNE2 (ENSG00000054654), SPTB (ENSG00000070182), ACTN1 (ENSG00000072110), ACTN2 (ENSG00000077522), DSP (ENSG00000096696), DRP2 (ENSG00000102385), SPTBN1 (ENSG00000115306), MACF1 (ENSG00000127603), FLNC (ENSG00000128591), ACTN4 (ENSG00000130402), SYNE1 (ENSG00000131018), MICAL2 (ENSG00000133816), DTNA (ENSG00000134769), MICAL1 (ENSG00000135596), FLNB (ENSG00000136068), SPTBN5 (ENSG00000137877), DTNB (ENSG00000138101), GAS2L3 (ENSG00000139354), DST (ENSG00000151914), UTRN (ENSG00000152818), SPTBN4 (ENSG00000160460), SPTA1 (ENSG00000163554), CLMN (ENSG00000165959), PKHD1 (ENSG00000170927), SYNE3 (ENSG00000176438), PLEC (ENSG00000178209), SMTNL2 (ENSG00000188176), FLNA (ENSG00000196924), SPTAN1 (ENSG00000197694), DMD (ENSG00000198947), PKHD1L1 (ENSG00000205038), DYTN (ENSG00000232125), MICAL3 (ENSG00000243156), ACTN3 (ENSG00000248746), EPPK1 (ENSG00000261150), GAS2L2 (ENSG00000270765)
Protein
Protein identifiers
Spectrin beta chain, non-erythrocytic 2 — O15020 (reviewed: O15020)
Alternative names: Beta-III spectrin, Spinocerebellar ataxia 5 protein
All UniProt accessions (8): O15020, A0A087WYQ1, A0AAQ5BGS8, A0AAQ5BGT4, A0AAQ5BGT9, A0AAQ5BGU2, A0AAQ5BGW1, A4QPE4
UniProt curated annotations — full annotation on UniProt →
Function. Probably plays an important role in neuronal membrane skeleton.
Subcellular location. Cytoplasm. Cytoskeleton. Cell cortex.
Tissue specificity. Highly expressed in brain, kidney, pancreas, and liver, and at lower levels in lung and placenta.
Disease relevance. Spinocerebellar ataxia 5 (SCA5) [MIM:600224] Spinocerebellar ataxia is a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA5 is an autosomal dominant cerebellar ataxia (ADCA). It is a slowly progressive disorder with variable age at onset, ranging between 10 and 50 years. The disease is caused by variants affecting the gene represented in this entry. Spinocerebellar ataxia, autosomal recessive, 14 (SCAR14) [MIM:615386] A form of spinocerebellar ataxia, a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCAR14 is characterized by delayed psychomotor development, severe early onset gait ataxia, eye movement abnormalities, cerebellar atrophy on brain imaging, and intellectual disability. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the spectrin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15020-1 | 1 | yes |
| O15020-2 | 2 |
RefSeq proteins (2): NP_001397954, NP_008877* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001589 | Actinin_actin-bd_CS | Conserved_site |
| IPR001605 | PH_dom-spectrin-type | Domain |
| IPR001715 | CH_dom | Domain |
| IPR001849 | PH_domain | Domain |
| IPR002017 | Spectrin_repeat | Repeat |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR016343 | Spectrin_bsu | Family |
| IPR018159 | Spectrin/alpha-actinin | Repeat |
| IPR036872 | CH_dom_sf | Homologous_superfamily |
| IPR041681 | PH_9 | Domain |
Pfam: PF00307, PF00435, PF15410
UniProt features (68 total): repeat 17, strand 12, modified residue 9, sequence variant 8, helix 6, turn 4, domain 3, region of interest 3, compositionally biased region 3, initiator methionine 1, chain 1, splice variant 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6ANU | ELECTRON MICROSCOPY | 7 |
| 1WJM | SOLUTION NMR | |
| 1WYQ | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15020-F1 | 76.91 | 0.08 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (9): 2, 6, 31, 959, 1073, 2171, 2199, 2354, 2359
Function
Pathways and Gene Ontology
Reactome pathways
21 pathways
| ID | Pathway |
|---|---|
| R-HSA-2132295 | MHC class II antigen presentation |
| R-HSA-375165 | NCAM signaling for neurite out-growth |
| R-HSA-445095 | Interaction between L1 and Ankyrins |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6807878 | COPI-mediated anterograde transport |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-162582 | Signal Transduction |
| R-HSA-168256 | Immune System |
| R-HSA-199977 | ER to Golgi Anterograde Transport |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-373760 | L1CAM interactions |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-422475 | Axon guidance |
| R-HSA-446203 | Asparagine N-linked glycosylation |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-5683057 | MAPK family signaling cascades |
| R-HSA-5684996 | MAPK1/MAPK3 signaling |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-948021 | Transport to the Golgi and subsequent modification |
| R-HSA-9675108 | Nervous system development |
MSigDB gene sets: 289 (showing top):
GOBP_NEGATIVE_REGULATION_OF_PROTEIN_CONTAINING_COMPLEX_ASSEMBLY, GOBP_HINDBRAIN_DEVELOPMENT, GOBP_REGULATION_OF_PROTEIN_POLYMERIZATION, GOBP_METENCEPHALON_DEVELOPMENT, GOBP_BEHAVIOR, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GOBP_SYNAPSE_ASSEMBLY, GOBP_ADULT_BEHAVIOR, GOBP_NEGATIVE_REGULATION_OF_PROTEIN_POLYMERIZATION, GOZGIT_ESR1_TARGETS_DN, GOBP_GROWTH, REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH, GOBP_CEREBELLAR_CORTEX_MORPHOGENESIS, GOBP_NEGATIVE_REGULATION_OF_ACTIN_FILAMENT_DEPOLYMERIZATION
GO Biological Process (10): synapse assembly (GO:0007416), vesicle-mediated transport (GO:0016192), cerebellar Purkinje cell layer morphogenesis (GO:0021692), actin cytoskeleton organization (GO:0030036), adult behavior (GO:0030534), multicellular organism growth (GO:0035264), actin filament capping (GO:0051693), regulation of postsynaptic specialization assembly (GO:0099150), cytoskeleton organization (GO:0007010), postsynapse organization (GO:0099173)
GO Molecular Function (9): actin binding (GO:0003779), structural constituent of cytoskeleton (GO:0005200), phospholipid binding (GO:0005543), cadherin binding (GO:0045296), actin filament binding (GO:0051015), structural constituent of synapse (GO:0098918), structural constituent of postsynapse (GO:0099186), protein binding (GO:0005515), cytoskeletal protein binding (GO:0008092)
GO Cellular Component (18): obsolete extracellular space (GO:0005615), cytosol (GO:0005829), plasma membrane (GO:0005886), spectrin (GO:0008091), apical plasma membrane (GO:0016324), cell junction (GO:0030054), cortical actin cytoskeleton (GO:0030864), paranodal junction (GO:0033010), cell projection (GO:0042995), neuronal cell body (GO:0043025), parallel fiber to Purkinje cell synapse (GO:0098688), presynapse (GO:0098793), glutamatergic synapse (GO:0098978), postsynaptic spectrin-associated cytoskeleton (GO:0099189), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cell cortex (GO:0005938), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-15 pathways:
| Category | Pathways |
|---|---|
| Axon guidance | 2 |
| Adaptive Immune System | 1 |
| L1CAM interactions | 1 |
| MAPK1/MAPK3 signaling | 1 |
| ER to Golgi Anterograde Transport | 1 |
| Immune System | 1 |
| Membrane Trafficking | 1 |
| Transport to the Golgi and subsequent modification | 1 |
| Vesicle-mediated transport | 1 |
| Nervous system development | 1 |
| Post-translational protein modification | 1 |
| Signal Transduction | 1 |
| MAPK family signaling cascades | 1 |
| Metabolism of proteins | 1 |
| Asparagine N-linked glycosylation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| synapse organization | 3 |
| synapse | 3 |
| cytoskeleton organization | 2 |
| structural molecule activity | 2 |
| postsynapse | 2 |
| cytoplasm | 2 |
| cell periphery | 2 |
| nervous system development | 1 |
| cell junction assembly | 1 |
| transport | 1 |
| cellular process | 1 |
| anatomical structure morphogenesis | 1 |
| cerebellar Purkinje cell layer development | 1 |
| cerebellar cortex morphogenesis | 1 |
| actin filament-based process | 1 |
| behavior | 1 |
| multicellular organismal process | 1 |
| developmental growth | 1 |
| negative regulation of actin filament depolymerization | 1 |
| negative regulation of actin filament polymerization | 1 |
| postsynaptic specialization assembly | 1 |
| regulation of organelle assembly | 1 |
| organelle organization | 1 |
| cellular component organization | 1 |
| cytoskeletal protein binding | 1 |
| cytoskeleton | 1 |
| lipid binding | 1 |
| cell adhesion molecule binding | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| structural constituent of synapse | 1 |
| postsynapse organization | 1 |
| binding | 1 |
| protein binding | 1 |
| membrane | 1 |
| cortical actin cytoskeleton | 1 |
| protein-containing complex | 1 |
| apical part of cell | 1 |
| plasma membrane region | 1 |
Protein interactions and networks
STRING
1410 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SPTBN2 | SLC1A6 | P48664 | 949 |
| SPTBN2 | ATXN10 | Q9UBB4 | 924 |
| SPTBN2 | ARHGEF11 | O15085 | 890 |
| SPTBN2 | PLEKHG4 | Q58EX7 | 878 |
| SPTBN2 | TTBK2 | Q6IQ55 | 876 |
| SPTBN2 | ATXN7 | O15265 | 827 |
| SPTBN2 | CACNA1A | P78510 | 823 |
| SPTBN2 | ZNF592 | Q92610 | 818 |
| SPTBN2 | GRID2 | O43424 | 726 |
| SPTBN2 | KCNC3 | Q14003 | 726 |
| SPTBN2 | ATXN3 | P54252 | 683 |
| SPTBN2 | ATXN1 | P54253 | 670 |
| SPTBN2 | EPB41 | P11171 | 664 |
| SPTBN2 | PRKCG | P05129 | 662 |
| SPTBN2 | ATXN2 | Q99700 | 661 |
IntAct
92 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| IKBKG | IKBKB | psi-mi:“MI:0914”(association) | 0.980 |
| SMARCB1 | ARID1A | psi-mi:“MI:0914”(association) | 0.860 |
| OPG044 | DDX3X | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| KIFAP3 | KIF3C | psi-mi:“MI:0914”(association) | 0.640 |
| TUBB3 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| ESR2 | FBLL1 | psi-mi:“MI:0914”(association) | 0.460 |
| ATAD2 | SPTBN2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| Cdk1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| SPTBN2 | ADRB2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CELSR3 | SPTBN2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SPTBN2 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| SPTBN2 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| SPTBN2 | BKRF1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Aurkb | SPTBN2 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO18A | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO1C | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO19 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| FLNA | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Bod1 | SPTBN2 | psi-mi:“MI:0914”(association) | 0.350 |
| Calml3 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| SYNPO | LMO7 | psi-mi:“MI:0914”(association) | 0.350 |
| Myh9 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Myo1c | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| Myh9 | GOSR1 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZA2 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (233): SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Co-fractionation), SPTBN2 (Co-fractionation), SPTBN2 (Co-fractionation), SPTBN2 (Co-fractionation), SPTBN2 (Co-fractionation), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS), SPTBN2 (Affinity Capture-MS)
ESM2 similar proteins: A5D7D1, B0WYY2, L7UZ85, O01422, O13728, O15020, O43707, O88990, P05094, P11277, P12814, P15311, P15508, P18091, P20111, P26040, P31976, P31977, P32599, P35609, P46150, P57780, Q00963, Q01082, Q08043, Q0III9, Q13576, Q2PFV7, Q3B7N2, Q3UQ44, Q3ZC55, Q4QR29, Q5RCS6, Q62018, Q62261, Q6DEU9, Q6NXC0, Q6PD62, Q7PKQ5, Q7TPR4
Diamond homologs: A5D7D1, D3ZEN0, D3ZHA0, D3ZHV2, D3ZQL6, E1BBG2, F1MF74, F1RA39, F6QZ15, G3MWR8, G3V7L1, L7UZ85, M9MRD1, O13728, O15020, O43707, O75369, O76329, O88990, O94851, O97592, P05094, P05095, P07751, P11277, P11530, P11531, P11532, P11533, P12814, P13395, P13466, P15508, P16086, P16546, P18091, P20111, P21333, P30427, P35609
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 99 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Signaling by FLT3 fusion proteins | 5 | 46.8× | 1e-05 |
| RAF activation | 5 | 27.5× | 5e-05 |
| Signaling by high-kinase activity BRAF mutants | 5 | 26.0× | 6e-05 |
| Signaling by FGFR1 in disease | 5 | 24.0× | 6e-05 |
| MAP2K and MAPK activation | 5 | 23.4× | 7e-05 |
| Signaling by RAF1 mutants | 5 | 22.8× | 7e-05 |
| Signaling by moderate kinase activity BRAF mutants | 5 | 20.8× | 9e-05 |
| Paradoxical activation of RAF signaling by kinase inactive BRAF | 5 | 20.8× | 9e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| microtubule cytoskeleton organization | 7 | 10.1× | 5e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1407 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 25 |
| Likely pathogenic | 28 |
| Uncertain significance | 665 |
| Likely benign | 352 |
| Benign | 64 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1027424 | NM_006946.4(SPTBN2):c.157+1G>A | Pathogenic |
| 1048078 | NM_006946.4(SPTBN2):c.1240C>T (p.Arg414Cys) | Pathogenic |
| 1074233 | NM_006946.4(SPTBN2):c.5352dup (p.Asp1785Ter) | Pathogenic |
| 1323650 | NM_006946.4(SPTBN2):c.1444C>T (p.Gln482Ter) | Pathogenic |
| 1879205 | NM_006946.4(SPTBN2):c.6722+1G>T | Pathogenic |
| 1879208 | NM_006946.4(SPTBN2):c.3301G>T (p.Glu1101Ter) | Pathogenic |
| 208740 | NM_006946.4(SPTBN2):c.1915G>T (p.Glu639Ter) | Pathogenic |
| 2258160 | NM_006946.4(SPTBN2):c.2250_2252del (p.Tyr750_Gln751delinsTer) | Pathogenic |
| 2500212 | NM_006946.4(SPTBN2):c.5581del (p.Asp1861fs) | Pathogenic |
| 2642007 | NM_006946.4(SPTBN2):c.158-1G>T | Pathogenic |
| 2734018 | NM_006946.4(SPTBN2):c.1121G>T (p.Ser374Ile) | Pathogenic |
| 2810551 | NM_006946.4(SPTBN2):c.4233C>A (p.Tyr1411Ter) | Pathogenic |
| 2835724 | NM_006946.4(SPTBN2):c.4801_4816del (p.Glu1601fs) | Pathogenic |
| 3237165 | NM_006946.4(SPTBN2):c.6304G>T (p.Glu2102Ter) | Pathogenic |
| 3244770 | NC_000011.9:g.(?66472049)(66473328_?)del | Pathogenic |
| 3391810 | NM_006946.4(SPTBN2):c.3436C>T (p.Arg1146Ter) | Pathogenic |
| 3392612 | NM_006946.4(SPTBN2):c.6034+1G>A | Pathogenic |
| 4085932 | NM_006946.4(SPTBN2):c.3867+1G>C | Pathogenic |
| 448482 | NM_006946.4(SPTBN2):c.1596_1634del (p.Glu532_Met544del) | Pathogenic |
| 4811994 | NM_006946.4(SPTBN2):c.5197C>T (p.Arg1733Ter) | Pathogenic |
| 5274 | NM_006946.4(SPTBN2):c.1886_1900del (p.Leu629_Arg634delinsTrp) | Pathogenic |
| 5275 | NM_006946.4(SPTBN2):c.758T>C (p.Leu253Pro) | Pathogenic |
| 620423 | NM_006946.4(SPTBN2):c.5515C>T (p.Gln1839Ter) | Pathogenic |
| 64367 | NM_006946.4(SPTBN2):c.1881C>A (p.Cys627Ter) | Pathogenic |
| 64369 | NM_006946.4(SPTBN2):c.2864_2868del (p.Thr955fs) | Pathogenic |
| 1029115 | NM_006946.4(SPTBN2):c.4358A>T (p.Asp1453Val) | Likely pathogenic |
| 1029118 | NM_006946.4(SPTBN2):c.812C>T (p.Thr271Ile) | Likely pathogenic |
| 1195160 | NM_006946.4(SPTBN2):c.793G>C (p.Asp265His) | Likely pathogenic |
| 1333225 | NM_006946.4(SPTBN2):c.5974C>T (p.Gln1992Ter) | Likely pathogenic |
| 1485369 | NM_006946.4(SPTBN2):c.5950-2A>C | Likely pathogenic |
SpliceAI
5256 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:66687020:T:A | donor_gain | 1.0000 |
| 11:66687421:CTGTA:C | donor_loss | 1.0000 |
| 11:66687422:TGTAC:T | donor_loss | 1.0000 |
| 11:66687423:GTACC:G | donor_loss | 1.0000 |
| 11:66687424:TACCT:T | donor_loss | 1.0000 |
| 11:66687426:C:CT | donor_loss | 1.0000 |
| 11:66687643:GGTCC:G | acceptor_gain | 1.0000 |
| 11:66687644:GTCC:G | acceptor_gain | 1.0000 |
| 11:66687645:TCC:T | acceptor_gain | 1.0000 |
| 11:66687646:CC:C | acceptor_gain | 1.0000 |
| 11:66687646:CCC:C | acceptor_gain | 1.0000 |
| 11:66687647:CC:C | acceptor_gain | 1.0000 |
| 11:66687648:C:CC | acceptor_gain | 1.0000 |
| 11:66687648:C:T | acceptor_gain | 1.0000 |
| 11:66687648:CTGG:C | acceptor_loss | 1.0000 |
| 11:66687860:GAACT:G | donor_loss | 1.0000 |
| 11:66687861:AACT:A | donor_loss | 1.0000 |
| 11:66687863:CTC:C | donor_loss | 1.0000 |
| 11:66687864:TCA:T | donor_loss | 1.0000 |
| 11:66687865:CA:C | donor_loss | 1.0000 |
| 11:66687866:A:AC | donor_gain | 1.0000 |
| 11:66687867:C:CC | donor_gain | 1.0000 |
| 11:66688080:C:CC | acceptor_gain | 1.0000 |
| 11:66688090:C:CT | acceptor_gain | 1.0000 |
| 11:66688091:A:T | acceptor_gain | 1.0000 |
| 11:66688860:C:CT | acceptor_gain | 1.0000 |
| 11:66688861:G:T | acceptor_gain | 1.0000 |
| 11:66689090:GCTCA:G | donor_loss | 1.0000 |
| 11:66689091:CTCA:C | donor_loss | 1.0000 |
| 11:66689092:TCA:T | donor_loss | 1.0000 |
AlphaMissense
15544 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:66687465:C:A | K2228N | 1.000 |
| 11:66687465:C:G | K2228N | 1.000 |
| 11:66708265:C:G | R409P | 1.000 |
| 11:66708278:C:G | A405P | 1.000 |
| 11:66708286:A:G | L402P | 1.000 |
| 11:66708294:C:A | W399C | 1.000 |
| 11:66708294:C:G | W399C | 1.000 |
| 11:66708296:A:G | W399R | 1.000 |
| 11:66708296:A:T | W399R | 1.000 |
| 11:66708983:G:C | F370L | 1.000 |
| 11:66708983:G:T | F370L | 1.000 |
| 11:66708984:A:G | F370S | 1.000 |
| 11:66708985:A:G | F370L | 1.000 |
| 11:66709007:T:A | K362N | 1.000 |
| 11:66709007:T:G | K362N | 1.000 |
| 11:66709016:A:C | F359L | 1.000 |
| 11:66709016:A:T | F359L | 1.000 |
| 11:66709018:A:G | F359L | 1.000 |
| 11:66710705:A:G | L317P | 1.000 |
| 11:66710973:A:C | Y277D | 1.000 |
| 11:66713642:A:G | L254P | 1.000 |
| 11:66713693:A:G | L237P | 1.000 |
| 11:66714109:G:T | A213D | 1.000 |
| 11:66714110:C:G | A213P | 1.000 |
| 11:66714115:A:G | F211S | 1.000 |
| 11:66714124:C:A | G208V | 1.000 |
| 11:66714124:C:T | G208E | 1.000 |
| 11:66714125:C:G | G208R | 1.000 |
| 11:66714125:C:T | G208R | 1.000 |
| 11:66714133:C:G | W205S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000022170 (11:66714846 G>T), RS1000153610 (11:66719698 G>A,T), RS1000162991 (11:66708120 C>A,T), RS1000230616 (11:66733847 A>G), RS1000246907 (11:66704147 T>C), RS1000256259 (11:66740453 C>T), RS1000290073 (11:66702062 T>C), RS1000366628 (11:66746253 G>C), RS1000383114 (11:66701865 T>A,C), RS1000457991 (11:66720536 C>A,T), RS1000482048 (11:66704303 G>A,T), RS1000557426 (11:66716126 G>A), RS1000672558 (11:66725881 T>C), RS1000673652 (11:66691153 C>T), RS1000757791 (11:66686157 C>T)
Disease associations
OMIM: gene MIM:604985 | disease phenotypes: MIM:600224, MIM:615386, MIM:303350
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| spinocerebellar ataxia type 5 | Definitive | Autosomal dominant |
| autosomal recessive spinocerebellar ataxia 14 | Definitive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive spinocerebellar ataxia 14 | Definitive | AR |
| spinocerebellar ataxia type 5 | Definitive | AD |
Mondo (6): spinocerebellar ataxia type 5 (MONDO:0010848), autosomal recessive spinocerebellar ataxia 14 (MONDO:0014159), hereditary spastic paraplegia (MONDO:0019064), cerebellar ataxia (MONDO:0000437), hereditary ataxia (MONDO:0100309), intellectual disability (MONDO:0001071)
Orphanet (6): Spinocerebellar ataxia type 5 (Orphanet:98766), Spectrin-associated autosomal recessive cerebellar ataxia (Orphanet:352403), Hereditary spastic paraplegia (Orphanet:685), Rare ataxia (Orphanet:102002), Hereditary ataxia (Orphanet:183518), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
45 total (30 of 45 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000317 | Facial myokymia |
| HP:0000486 | Strabismus |
| HP:0000571 | Hypometric saccades |
| HP:0000639 | Nystagmus |
| HP:0000640 | Gaze-evoked nystagmus |
| HP:0000641 | Dysmetric saccades |
| HP:0000651 | Diplopia |
| HP:0000666 | Horizontal nystagmus |
| HP:0000750 | Delayed speech and language development |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
| HP:0001257 | Spasticity |
| HP:0001260 | Dysarthria |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001288 | Gait disturbance |
| HP:0001310 | Dysmetria |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001347 | Hyperreflexia |
| HP:0001350 | Slurred speech |
| HP:0001583 | Rotary nystagmus |
| HP:0002066 | Gait ataxia |
| HP:0002070 | Limb ataxia |
| HP:0002073 | Progressive cerebellar ataxia |
| HP:0002075 | Dysdiadochokinesis |
| HP:0002078 | Truncal ataxia |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001241_12 | Bipolar disorder | 2.000000e-07 |
| GCST004139_3 | Bipolar disorder | 1.000000e-07 |
| GCST008103_30 | Bipolar disorder | 4.000000e-08 |
| GCST012090_40 | Major depressive disorder (MTAG) | 2.000000e-08 |
| GCST012227_667 | Hip circumference adjusted for BMI | 1.000000e-09 |
| GCST90020028_1912 | Hip circumference adjusted for BMI | 7.000000e-27 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002524 | Cerebellar Ataxia | C10.228.140.252.190; C10.597.350.090.500; C23.888.592.350.090.200 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D015419 | Spastic Paraplegia, Hereditary | C10.500.300.820; C10.574.500.495.820; C10.668.829.800.300.820; C16.131.666.300.820; C16.320.400.375.820 |
| C531684 | Hereditary spinal ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, decreases expression, decreases reaction, increases abundance | 2 |
| sodium arsenite | affects methylation, increases expression | 2 |
| (+)-JQ1 compound | decreases expression | 2 |
| Arsenic | affects methylation, increases methylation | 2 |
| Aflatoxin B1 | increases methylation, decreases methylation | 2 |
| FR900359 | decreases phosphorylation | 1 |
| ginger extract | decreases reaction, increases abundance, increases expression | 1 |
| dicrotophos | increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, decreases expression, affects localization | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Cadmium | increases expression | 1 |
| Calcitriol | increases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Furaldehyde | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| Ivermectin | increases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Oils, Volatile | decreases reaction, increases abundance, increases expression | 1 |
| Sodium Chloride | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_E7NR | KOLF2.1J SPTBN2 25.2kbdel DEL/DEL | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
287 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT07542548 | PHASE4 | COMPLETED | D-Cycloserine for Serine Palmitoyltransferase Inhibition |
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT04107740 | PHASE4 | COMPLETED | C-Trelin Orally Disintegrated(OD) Tablet 5mg in Ataxia Due to Spinocerebellar Degeneration |
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT01970098 | PHASE3 | COMPLETED | A Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970111 | PHASE3 | COMPLETED | An Extension Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970124 | PHASE3 | COMPLETED | A Long-Term Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01970137 | PHASE3 | COMPLETED | A 24-week Open-label Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT02889302 | PHASE3 | COMPLETED | An Additional Confirmatory Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT03408080 | PHASE3 | ACTIVE_NOT_RECRUITING | Open Pilot Trial of BHV-4157 |
| NCT03701399 | PHASE3 | ACTIVE_NOT_RECRUITING | Troriluzole in Adult Participants With Spinocerebellar Ataxia |
| NCT03901638 | PHASE3 | TERMINATED | Tllsh2910 for Ataxia and Gut Microbiota Alteration in Patients of Multiple System Atrophy |
| NCT07040137 | PHASE3 | RECRUITING | Confirmatory Study 3 of KPS-0373 in Patients With Spinocerebellar Degeneration |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT03961906 | PHASE2 | COMPLETED | Physiotherapy in Hereditary Spastic Paraplegia |
| NCT04768166 | PHASE2 | COMPLETED | Testing Miglustat Administration in Subjects With Spastic Paraplegia 11 |
| NCT00034242 | PHASE2 | COMPLETED | High-Dose Intravenous Immunoglobulin to Treat Cerebellar Degeneration |
| NCT00202397 | PHASE2 | COMPLETED | Effect of Riluzole as a Symptomatic Approach in Patients With Chronic Cerebellar Ataxia |
| NCT00863538 | PHASE2 | COMPLETED | Phase II Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01004016 | PHASE2 | COMPLETED | A Study of KPS-0373 in Patients With Spinocerebellar Degeneration (SCD) |
| NCT01350440 | PHASE2 | COMPLETED | Safety and Efficacy of Intravenous Immune Globulin in Treating Spinocerebellar Ataxia |
| NCT02540655 | PHASE2 | COMPLETED | Efficacy and Safety Study of Stemchymal® in Polyglutamine Spinocerebellar Ataxia |
| NCT03932669 | PHASE2 | COMPLETED | Effect of Nilotinib in Cerebellar Ataxia Patients |
| NCT04301284 | PHASE2 | WITHDRAWN | Study of CAD-1883 for Spinocerebellar Ataxia |
| NCT05125666 | PHASE2 | UNKNOWN | Efficacy of Dual Task Training on Children With Ataxia After Medulloblastoma Resection |
| NCT06397274 | PHASE2 | NOT_YET_RECRUITING | Stemchymal® for Polyglutamine Spinocerebellar Ataxia |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT06117020 | PHASE1 | COMPLETED | Single and Multiple Ascending Dose Study of MTR-601 in Healthy Individuals |
| NCT00683943 | PHASE1 | COMPLETED | Lithium Treatment for Patients With Spinocerebellar Ataxia Type I |
| NCT02287064 | PHASE1 | UNKNOWN | An Open-label Trial of Intravenous Immune Globulin (IVIG)in Treating Spinocerebellar Ataxias |
| NCT05157802 | PHASE1 | ACTIVE_NOT_RECRUITING | Promoting Physical Activity Engagement for People With Early-stage Cerebellar Ataxia |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
Related Atlas pages
- Associated diseases: spinocerebellar ataxia type 5, autosomal recessive spinocerebellar ataxia 14
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive spinocerebellar ataxia 14, bipolar disorder, cerebellar ataxia, hereditary ataxia, hereditary spastic paraplegia, major depressive disorder, spinocerebellar ataxia type 5