SRP9
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Summary
SRP9 (signal recognition particle 9, HGNC:11304) is a protein-coding gene on chromosome 1q42.12, encoding Signal recognition particle 9 kDa protein (P49458). Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). It is a common-essential gene (DepMap: required in 95.4% of cancer cell lines).
Predicted to enable RNA binding activity and signal recognition particle binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytosol. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting.
Source: NCBI Gene 6726 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 10 total
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 95.4% of screened cell lines (common-essential)
- MANE Select transcript:
NM_003133
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11304 |
| Approved symbol | SRP9 |
| Name | signal recognition particle 9 |
| Location | 1q42.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000143742 |
| Ensembl biotype | protein_coding |
| OMIM | 600707 |
| Entrez | 6726 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 11 protein_coding, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000304786, ENST00000366838, ENST00000366839, ENST00000619790, ENST00000626563, ENST00000650651, ENST00000651465, ENST00000651653, ENST00000651761, ENST00000861557, ENST00000924808, ENST00000924809, ENST00000924810
RefSeq mRNA: 2 — MANE Select: NM_003133
NM_001130440, NM_003133
CCDS: CCDS1546, CCDS44323
Canonical transcript exons
ENST00000304786 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000961765 | 225783300 | 225783368 |
| ENSE00001442734 | 225777826 | 225778012 |
| ENSE00003686398 | 225789240 | 225790464 |
Expression profiles
Bgee: expression breadth ubiquitous, 149 present calls, max score 99.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 70.9534 / max 2592.6961, expressed in 1816 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8829 | 70.9534 | 1816 |
Top tissues by expression
149 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| embryo | UBERON:0000922 | 99.53 | gold quality |
| ganglionic eminence | UBERON:0004023 | 99.53 | gold quality |
| ventricular zone | UBERON:0003053 | 99.52 | gold quality |
| endometrium | UBERON:0001295 | 99.41 | gold quality |
| cortical plate | UBERON:0005343 | 99.40 | gold quality |
| adrenal tissue | UBERON:0018303 | 99.33 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.32 | gold quality |
| corpus callosum | UBERON:0002336 | 99.24 | gold quality |
| hypothalamus | UBERON:0001898 | 99.14 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.13 | gold quality |
| rectum | UBERON:0001052 | 99.11 | gold quality |
| substantia nigra | UBERON:0002038 | 99.09 | gold quality |
| amygdala | UBERON:0001876 | 99.08 | gold quality |
| spinal cord | UBERON:0002240 | 99.08 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.08 | gold quality |
| temporal lobe | UBERON:0001871 | 99.07 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 99.06 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.05 | gold quality |
| gall bladder | UBERON:0002110 | 99.05 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 99.04 | gold quality |
| lymph node | UBERON:0000029 | 99.03 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.02 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.01 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 99.01 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.99 | gold quality |
| caudate nucleus | UBERON:0001873 | 98.98 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.95 | gold quality |
| putamen | UBERON:0001874 | 98.93 | gold quality |
| telencephalon | UBERON:0001893 | 98.91 | gold quality |
| adrenal gland | UBERON:0002369 | 98.91 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 41.59 |
| E-GEOD-84465 | yes | 23.31 |
| E-MTAB-10042 | yes | 10.84 |
| E-MTAB-6819 | no | 4013.41 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
87 targeting SRP9, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 95.4% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 5)
- PSB7, PRDX1, and SRP9 up-regulation as candidate biomarkers of colon cancer is discovered (PMID:18549262)
- mutational study on SRP9/14 that identified and characterized regions and single residues essential for elongation arrest activity (PMID:20348448)
- Dats show that Alu RNA promotes functional binding of Signal Recognition Particle proteins SRP9/14 to 40S ribosomal subunits. (PMID:25697503)
- Investigation of SRP9 protein expression in breast cancer. (PMID:34727289)
- Significance of signal recognition particle 9 nuclear translocation: Implications for pancreatic cancer prognosis and functionality. (PMID:38847231)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | srp9 | ENSDARG00000042851 |
| mus_musculus | Srp9 | ENSMUSG00000026511 |
| rattus_norvegicus | Srp9 | ENSRNOG00000003211 |
| drosophila_melanogaster | Srp9 | FBGN0035827 |
| caenorhabditis_elegans | WBGENE00013984 |
Protein
Protein identifiers
Signal recognition particle 9 kDa protein — P49458 (reviewed: P49458)
All UniProt accessions (4): P49458, E9PE20, Q659G3, Q6P2S0
UniProt curated annotations — full annotation on UniProt →
Function. Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.
Subunit / interactions. Heterodimer with SRP14; binds RNA as heterodimer. Component of a signal recognition particle complex that consists of a 7SL RNA molecule of 300 nucleotides and six protein subunits: SRP72, SRP68, SRP54, SRP19, SRP14 and SRP9.
Subcellular location. Cytoplasm.
Similarity. Belongs to the SRP9 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P49458-1 | 1 | yes |
| P49458-2 | 2 |
RefSeq proteins (2): NP_001123912, NP_003124* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008832 | SRP9 | Family |
| IPR009018 | Signal_recog_particle_SRP9/14 | Homologous_superfamily |
| IPR039432 | SRP9_dom | Domain |
| IPR039914 | SRP9-like | Family |
Pfam: PF05486
UniProt features (15 total): strand 5, helix 3, turn 2, initiator methionine 1, chain 1, sequence conflict 1, modified residue 1, splice variant 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5AOX | X-RAY DIFFRACTION | 2.04 |
| 1E8O | X-RAY DIFFRACTION | 3.2 |
| 7NFX | ELECTRON MICROSCOPY | 3.2 |
| 4UYK | X-RAY DIFFRACTION | 3.22 |
| 4UYJ | X-RAY DIFFRACTION | 3.35 |
| 1E8S | X-RAY DIFFRACTION | 4 |
| 1RY1 | ELECTRON MICROSCOPY | 12 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49458-F1 | 90.41 | 0.85 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 52
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-1799339 | SRP-dependent cotranslational protein targeting to membrane |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-72766 | Translation |
MSigDB gene sets: 228 (showing top):
MORF_MTA1, MORF_MBD4, MODULE_151, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, MODULE_150, MORF_HDAC1, GOBP_PROTEIN_TARGETING, MORF_RAD21, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ENDOPLASMIC_RETICULUM, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, GOBP_REGULATION_OF_TRANSLATIONAL_ELONGATION, MORF_HDAC2, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, MODULE_149, MORF_PSMC2
GO Biological Process (2): SRP-dependent cotranslational protein targeting to membrane (GO:0006614), negative regulation of translational elongation (GO:0045900)
GO Molecular Function (4): RNA binding (GO:0003723), signal recognition particle binding (GO:0005047), 7S RNA binding (GO:0008312), protein binding (GO:0005515)
GO Cellular Component (6): signal recognition particle receptor complex (GO:0005785), signal recognition particle, endoplasmic reticulum targeting (GO:0005786), cytosol (GO:0005829), cytoplasm (GO:0005737), signal recognition particle (GO:0048500), ribonucleoprotein complex (GO:1990904)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Translation | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 2 |
| cellular anatomical structure | 2 |
| translation | 1 |
| cotranslational protein targeting to membrane | 1 |
| protein targeting to ER | 1 |
| translational elongation | 1 |
| regulation of translational elongation | 1 |
| negative regulation of translation | 1 |
| nucleic acid binding | 1 |
| ribonucleoprotein complex binding | 1 |
| RNA binding | 1 |
| binding | 1 |
| rough endoplasmic reticulum membrane | 1 |
| membrane protein complex | 1 |
| endoplasmic reticulum protein-containing complex | 1 |
| signal recognition particle | 1 |
| intracellular anatomical structure | 1 |
| ribonucleoprotein complex | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
2232 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SRP9 | SRP14 | P37108 | 999 |
| SRP9 | SRP72 | O76094 | 999 |
| SRP9 | SRP19 | P09132 | 999 |
| SRP9 | SRP68 | Q9UHB9 | 999 |
| SRP9 | SRP54 | P13624 | 997 |
| SRP9 | SRPRA | P08240 | 681 |
| SRP9 | SRPRB | Q9Y5M8 | 644 |
| SRP9 | COG3 | Q96JB2 | 601 |
| SRP9 | PABPC1 | P11940 | 580 |
| SRP9 | SPCS1 | Q9Y6A9 | 570 |
| SRP9 | SZRD1 | Q7Z422 | 531 |
| SRP9 | SEC61G | P38384 | 523 |
| SRP9 | HNRNPK | P61978 | 506 |
| SRP9 | SEC61A1 | P38378 | 504 |
| SRP9 | SHMT1 | P34896 | 496 |
IntAct
183 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SRP9 | SRP14 | psi-mi:“MI:0915”(physical association) | 0.890 |
| SRP14 | SRP9 | psi-mi:“MI:0915”(physical association) | 0.890 |
| SRP9 | SRP72 | psi-mi:“MI:0914”(association) | 0.730 |
| PTK2 | TGFB1I1 | psi-mi:“MI:0914”(association) | 0.680 |
| ACTN2 | SRP9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RYBP | SRP9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SRP9 | DPP9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CDHR3 | SRP9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CC2D2A | OFD1 | psi-mi:“MI:2364”(proximity) | 0.420 |
| SGCD | SRP9 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| OTUB1 | psi-mi:“MI:0914”(association) | 0.350 | |
| psi-mi:“MI:0914”(association) | 0.350 | ||
| Edc4 | C4BPA | psi-mi:“MI:0914”(association) | 0.350 |
| EXOSC1 | MPHOSPH6 | psi-mi:“MI:0914”(association) | 0.350 |
| DUX4 | CBX3 | psi-mi:“MI:0914”(association) | 0.350 |
| E7 | COPE | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (525): SRP9 (Affinity Capture-MS), SRP9 (Affinity Capture-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Proximity Label-MS), SRP9 (Affinity Capture-MS), SRP9 (Affinity Capture-MS), SRP9 (Affinity Capture-MS), SRP9 (Affinity Capture-MS), SRP9 (Two-hybrid), SRP54 (Affinity Capture-MS)
ESM2 similar proteins: A0A140F3K6, A0A6M3VZT9, A0RVX7, A1KRS4, A4IR79, A4VSE9, A4VYN7, A8ALC5, A9A5J1, A9VI08, B1MXP9, B7IYP1, B8DCF0, C5D4Z2, I6WJ72, O26903, O27943, O29789, O30321, O32124, P0DW82, P18005, P41063, P49458, P51429, Q03R44, Q03YQ1, Q04ER0, Q0AZQ0, Q12NR2, Q16BB4, Q1WT33, Q2LQ83, Q2RHZ4, Q2W1Y0, Q3JYN3, Q47269, Q57778, Q5KWU6, Q65GS6
Diamond homologs: O04438, P21262, P34642, P49458, P49962, Q4R6I6, Q55GL2, Q9SMU7, Q9VSC1
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 139 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 6 | 10.2× | 6e-03 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 6 | 10.2× | 6e-03 |
| AURKA Activation by TPX2 | 6 | 9.8× | 6e-03 |
| Anchoring of the basal body to the plasma membrane | 8 | 9.7× | 1e-03 |
| Recruitment of mitotic centrosome proteins and complexes | 6 | 8.8× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
10 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 2 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
579 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:225778008:TGAAG:T | donor_loss | 1.0000 |
| 1:225778013:GT:G | donor_loss | 1.0000 |
| 1:225778014:T:G | donor_loss | 1.0000 |
| 1:225783364:TAGTT:T | donor_gain | 1.0000 |
| 1:225783366:GTT:G | donor_gain | 1.0000 |
| 1:225783367:TT:T | donor_gain | 1.0000 |
| 1:225783369:G:GG | donor_gain | 1.0000 |
| 1:225783365:AGTT:A | donor_gain | 0.9900 |
| 1:225783366:GTTG:G | donor_gain | 0.9900 |
| 1:225783367:TTGT:T | donor_gain | 0.9900 |
| 1:225783367:TTGTA:T | donor_loss | 0.9900 |
| 1:225783368:TGTA:T | donor_loss | 0.9900 |
| 1:225783369:G:A | donor_loss | 0.9900 |
| 1:225783370:T:TG | donor_loss | 0.9900 |
| 1:225783371:AA:A | donor_loss | 0.9900 |
| 1:225783372:A:AA | donor_loss | 0.9900 |
| 1:225783373:G:A | donor_loss | 0.9900 |
| 1:225789238:A:AG | acceptor_gain | 0.9900 |
| 1:225789239:G:GG | acceptor_gain | 0.9900 |
| 1:225789239:GT:G | acceptor_gain | 0.9900 |
| 1:225778105:G:GT | donor_gain | 0.9800 |
| 1:225778142:T:G | donor_gain | 0.9800 |
| 1:225783299:GGCAC:G | acceptor_gain | 0.9800 |
| 1:225778866:TT:T | donor_gain | 0.9700 |
| 1:225783298:A:AG | acceptor_gain | 0.9700 |
| 1:225783299:G:GG | acceptor_gain | 0.9700 |
| 1:225783293:GTTTC:G | acceptor_loss | 0.9600 |
| 1:225783294:TTTCA:T | acceptor_loss | 0.9600 |
| 1:225783295:TTCA:T | acceptor_loss | 0.9600 |
| 1:225783297:CA:C | acceptor_loss | 0.9600 |
AlphaMissense
572 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:225777959:T:A | W7R | 0.999 |
| 1:225777959:T:C | W7R | 0.999 |
| 1:225777968:T:C | F10L | 0.999 |
| 1:225777969:T:C | F10S | 0.999 |
| 1:225777970:C:A | F10L | 0.999 |
| 1:225777970:C:G | F10L | 0.999 |
| 1:225777981:C:A | A14D | 0.999 |
| 1:225777961:G:C | W7C | 0.998 |
| 1:225777961:G:T | W7C | 0.998 |
| 1:225777980:G:C | A14P | 0.998 |
| 1:225789249:T:G | Y51D | 0.998 |
| 1:225783303:C:A | R26S | 0.997 |
| 1:225783318:T:C | Y31H | 0.997 |
| 1:225783318:T:G | Y31D | 0.997 |
| 1:225789278:G:C | K60N | 0.997 |
| 1:225789278:G:T | K60N | 0.997 |
| 1:225789304:T:C | L69P | 0.997 |
| 1:225783304:G:C | R26P | 0.996 |
| 1:225783355:C:T | T43I | 0.996 |
| 1:225789256:C:T | T53I | 0.996 |
| 1:225777990:T:C | L17P | 0.995 |
| 1:225783346:T:A | V40D | 0.995 |
| 1:225777960:G:C | W7S | 0.994 |
| 1:225777969:T:G | F10C | 0.994 |
| 1:225783319:A:C | Y31S | 0.994 |
| 1:225789274:T:A | V59E | 0.994 |
| 1:225789276:A:G | K60E | 0.994 |
| 1:225777968:T:A | F10I | 0.993 |
| 1:225777992:T:G | Y18D | 0.993 |
| 1:225789249:T:A | Y51N | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000465567 (1:225781790 A>G), RS1000484206 (1:225785176 T>G), RS1000793867 (1:225781498 C>A), RS1000955648 (1:225778153 C>A,G,T), RS1001085638 (1:225783585 T>C), RS1001200822 (1:225783189 G>A), RS1001266450 (1:225784000 GT>G,GTT,GTTT), RS1001528845 (1:225780788 C>A), RS1001560052 (1:225781102 T>C), RS1001866036 (1:225789622 CAT>C), RS1002426753 (1:225788358 A>G), RS1002536818 (1:225779544 C>T), RS1002567846 (1:225779923 C>T), RS1002771108 (1:225786070 T>G), RS1002779553 (1:225784543 C>T)
Disease associations
OMIM: gene MIM:600707 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003447_2 | Neuroticism | 2.000000e-08 |
| GCST004607_209 | Plateletcrit | 2.000000e-09 |
| GCST006464_3 | Endometrial cancer | 8.000000e-07 |
| GCST009312_20 | Antisaccade task score | 5.000000e-06 |
| GCST90002388_54 | Lymphocyte count | 2.000000e-13 |
| GCST90002392_255 | Mean corpuscular volume | 5.000000e-13 |
| GCST90002400_542 | Plateletcrit | 5.000000e-14 |
| GCST90002401_405 | Platelet distribution width | 2.000000e-13 |
| GCST90002402_264 | Platelet count | 1.000000e-09 |
| GCST90002404_449 | Red cell distribution width | 1.000000e-12 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007660 | neuroticism measurement |
| EFO:0007985 | platelet crit |
| EFO:0007969 | cognitive inhibition measurement |
| EFO:0004587 | lymphocyte count |
| EFO:0007984 | platelet component distribution width |
| EFO:0004309 | platelet count |
| EFO:0009188 | Red cell distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5725084 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 3 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.27 | Kd | 5323 | nM | CHEMBL3752910 |
| 5.27 | ED50 | 5323 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 10 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149487: Binding affinity to human SRP9 incubated for 45 mins by Kinobead based pull down assay | kd | 5.3228 | uM |
CTD chemical–gene interactions
54 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects expression, decreases expression, increases expression | 4 |
| sodium arsenite | decreases expression | 2 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| terbufos | decreases methylation | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| 4-hydroxy-2-nonenal | affects binding | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| chloropicrin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Ethanol | increases abundance, affects cotreatment, decreases expression | 1 |
| Arsenic | decreases expression | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | decreases expression | 1 |
ChEMBL screening assays
7 unique, capped per target: 7 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652529 | Binding | Binding affinity to human SRP9 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3I6 | Abcam HEK293T SRP9 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): endometrial carcinoma