ST6GAL2-IT1

Summary

ST6GAL2-IT1 (ST6GAL2 intronic transcript 1, HGNC:41380) is a long non-coding RNA gene on chromosome 2q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41380
Approved symbol	ST6GAL2-IT1
Name	ST6GAL2 intronic transcript 1
Location	2q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238250
Ensembl biotype	lncRNA
Entrez	100874354
RNAcentral	URS00000F44D2 — lncRNA, 388 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000446058

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446058 — 2 exons

Exon	Start	End
ENSE00001716942	106824866	106825031
ENSE00001763590	106822923	106823144

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 73.27.

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	73.27	gold quality
adrenal tissue	UBERON:0018303	72.07	gold quality
descending thoracic aorta	UBERON:0002345	70.96	gold quality
ventricular zone	UBERON:0003053	70.36	gold quality
ascending aorta	UBERON:0001496	70.29	gold quality
thoracic aorta	UBERON:0001515	70.16	gold quality
ganglionic eminence	UBERON:0004023	69.40	gold quality
gall bladder	UBERON:0002110	68.78	gold quality
placenta	UBERON:0001987	65.55	gold quality
left coronary artery	UBERON:0001626	65.24	gold quality
right coronary artery	UBERON:0001625	65.15	gold quality
right lobe of thyroid gland	UBERON:0001119	63.11	gold quality
thyroid gland	UBERON:0002046	62.53	gold quality
left lobe of thyroid gland	UBERON:0001120	62.42	gold quality
corpus callosum	UBERON:0002336	61.83	gold quality
prefrontal cortex	UBERON:0000451	61.15	gold quality
superior frontal gyrus	UBERON:0002661	60.60	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.58	gold quality
popliteal artery	UBERON:0002250	59.02	gold quality
tibial artery	UBERON:0007610	58.93	gold quality
primary visual cortex	UBERON:0002436	58.84	gold quality
amygdala	UBERON:0001876	58.32	gold quality
monocyte	CL:0000576	57.33	gold quality
heart	UBERON:0000948	56.96	gold quality
stomach	UBERON:0000945	55.74	gold quality
blood	UBERON:0000178	55.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.37	gold quality
frontal cortex	UBERON:0001870	55.08	gold quality
liver	UBERON:0002107	54.98	gold quality
anterior cingulate cortex	UBERON:0009835	54.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.