STAP1
geneOn this page
Also known as STAP-1BRDG1
Summary
STAP1 (signal transducing adaptor family member 1, HGNC:24133) is a protein-coding gene on chromosome 4q13.2, encoding Signal-transducing adaptor protein 1 (Q9ULZ2). In BCR signaling, appears to function as a docking protein acting downstream of TEC and participates in a positive feedback loop by increasing the activity of TEC.
The protein encoded by this gene contains a proline-rich region, a pleckstrin homology (PH) domain, and a region in the carboxy terminal half with similarity to the Src Homology 2 (SH2) domain. This protein is a substrate of tyrosine-protein kinase Tec, and its interaction with tyrosine-protein kinase Tec is phosphorylation-dependent. This protein is thought to participate in a positive feedback loop by upregulating the activity of tyrosine-protein kinase Tec. Variants of this gene have been associated with autosomal-dominant hypercholesterolemia (ADH), which is characterized by elevated low-density lipoprotein cholesterol levels and in increased risk of coronary vascular disease. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 26228 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 158 total — 1 likely-pathogenic
- MANE Select transcript:
NM_012108
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24133 |
| Approved symbol | STAP1 |
| Name | signal transducing adaptor family member 1 |
| Location | 4q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | STAP-1, BRDG1 |
| Ensembl gene | ENSG00000035720 |
| Ensembl biotype | protein_coding |
| OMIM | 604298 |
| Entrez | 26228 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000265404, ENST00000396225, ENST00000894638, ENST00000894639
RefSeq mRNA: 2 — MANE Select: NM_012108
NM_001317769, NM_012108
CCDS: CCDS3515
Canonical transcript exons
ENST00000265404 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000371763 | 67571084 | 67571155 |
| ENSE00000718793 | 67575385 | 67575498 |
| ENSE00000718799 | 67577203 | 67577259 |
| ENSE00000718804 | 67581305 | 67581471 |
| ENSE00000718819 | 67583574 | 67583702 |
| ENSE00000718848 | 67590884 | 67590953 |
| ENSE00000718890 | 67593260 | 67593356 |
| ENSE00001072365 | 67606296 | 67607337 |
| ENSE00003847227 | 67558727 | 67558929 |
Expression profiles
Bgee: expression breadth ubiquitous, 150 present calls, max score 87.79.
FANTOM5 (CAGE): breadth broad, TPM avg 3.5981 / max 267.2855, expressed in 256 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 47810 | 1.9033 | 216 |
| 47812 | 1.5864 | 181 |
| 47811 | 0.1084 | 55 |
Top tissues by expression
264 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lymph node | UBERON:0000029 | 87.79 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 85.00 | gold quality |
| spleen | UBERON:0002106 | 84.62 | gold quality |
| metanephros cortex | UBERON:0010533 | 84.55 | gold quality |
| vermiform appendix | UBERON:0001154 | 84.20 | gold quality |
| granulocyte | CL:0000094 | 80.86 | gold quality |
| caecum | UBERON:0001153 | 78.46 | gold quality |
| bone marrow cell | CL:0002092 | 78.10 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 77.60 | gold quality |
| bone marrow | UBERON:0002371 | 77.45 | gold quality |
| tonsil | UBERON:0002372 | 76.28 | gold quality |
| superficial temporal artery | UBERON:0001614 | 75.55 | gold quality |
| blood | UBERON:0000178 | 74.21 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 72.91 | gold quality |
| colonic epithelium | UBERON:0000397 | 70.37 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 69.88 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 69.65 | gold quality |
| renal medulla | UBERON:0000362 | 69.57 | gold quality |
| kidney | UBERON:0002113 | 69.02 | gold quality |
| rectum | UBERON:0001052 | 68.54 | gold quality |
| leukocyte | CL:0000738 | 67.03 | gold quality |
| small intestine | UBERON:0002108 | 66.81 | gold quality |
| cortex of kidney | UBERON:0001225 | 66.57 | gold quality |
| nephron tubule | UBERON:0001231 | 66.17 | silver quality |
| seminal vesicle | UBERON:0000998 | 65.78 | gold quality |
| mononuclear cell | CL:0000842 | 65.59 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 65.42 | gold quality |
| monocyte | CL:0000576 | 65.20 | gold quality |
| gall bladder | UBERON:0002110 | 65.07 | gold quality |
| metanephros | UBERON:0000081 | 64.51 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-38 | yes | 406.06 |
| E-ANND-3 | yes | 24.69 |
| E-CURD-114 | yes | 11.39 |
| E-CURD-112 | yes | 10.09 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| NOS2 | Activation |
miRNA regulators (miRDB)
67 targeting STAP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-4697-3P | 99.89 | 67.09 | 1123 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-7978 | 99.86 | 66.90 | 856 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-130B-5P | 99.83 | 68.50 | 1888 |
| HSA-MIR-6844 | 99.82 | 70.69 | 2423 |
| HSA-MIR-148A-3P | 99.74 | 73.77 | 1700 |
| HSA-MIR-148B-3P | 99.74 | 73.75 | 1700 |
| HSA-MIR-152-3P | 99.74 | 73.75 | 1703 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-6716-5P | 99.56 | 68.62 | 1244 |
| HSA-MIR-510-3P | 99.54 | 70.06 | 2965 |
| HSA-MIR-302B-5P | 99.50 | 69.49 | 1857 |
| HSA-MIR-302D-5P | 99.50 | 69.34 | 1863 |
Literature-anchored findings (GeneRIF, showing 9)
- Mutations in STAP1 are associated with autosomal dominant hypercholesterolemia. (PMID:25035151)
- STAP1 associated with Familial Hypercholesterolemia and Polygenic Hypercholesterolemia in patients with Acute Coronary Syndrome , age </=65 years, and LDL-C levels >/=160 mg/dl. (PMID:28958330)
- The findings confirm and extend the linkage between STAP1 variants and FH, and point to an important role of this adaptor protein within a signaling pathway that affects cholesterol homeostasis. (PMID:30308187)
- Predicted pathogenic mutations in STAP1 are not associated with clinically defined familial hypercholesterolemia. (PMID:31809983)
- Our combined studies in mouse models and carriers of STAP1 variants indicate that STAP1 is not a familial hypercholesterolemia gene. (PMID:31996024)
- Positive interactions between STAP-1 and BCR-ABL influence chronic myeloid leukemia cell proliferation and survival. (PMID:33845308)
- Signal-transducing adaptor protein-1 and protein-2 in hematopoiesis and diseases. (PMID:34780812)
- Diagnostic and prognostic value of STAP1 and AHNAK methylation in peripheral blood immune cells for HBV-related hepatopathy. (PMID:36713363)
- Relationship between STAP1 methylation in peripheral blood T cells and the clinicopathological characteristics and prognosis of patients within 5-cm diameter HCC. (PMID:37526444)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Stap1 | ENSMUSG00000029254 |
| rattus_norvegicus | Stap1 | ENSRNOG00000002014 |
Paralogs (1): STAP2 (ENSG00000178078)
Protein
Protein identifiers
Signal-transducing adaptor protein 1 — Q9ULZ2 (reviewed: Q9ULZ2)
Alternative names: BCR downstream-signaling protein 1, Docking protein BRDG1, Stem cell adaptor protein 1
All UniProt accessions (1): Q9ULZ2
UniProt curated annotations — full annotation on UniProt →
Function. In BCR signaling, appears to function as a docking protein acting downstream of TEC and participates in a positive feedback loop by increasing the activity of TEC.
Subunit / interactions. Interacts with KIT and CSF1R. Interacts with URI1; the interaction is phosphorylation-dependent and occurs in a growth-dependent manner.
Subcellular location. Nucleus. Cytoplasm. Mitochondrion.
Post-translational modifications. Phosphorylated on tyrosine by TEC. Phosphorylated on tyrosine by KIT.
RefSeq proteins (2): NP_001304698, NP_036240* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000980 | SH2 | Domain |
| IPR001849 | PH_domain | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR035877 | STAP1_SH2 | Domain |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
| IPR039111 | STAP1/STAP2 | Family |
Pfam: PF00017, PF00169
UniProt features (26 total): strand 15, helix 5, domain 2, chain 1, turn 1, region of interest 1, modified residue 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3MAZ | X-RAY DIFFRACTION | 1.9 |
| 1X1F | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9ULZ2-F1 | 79.06 | 0.39 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 168
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 369 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GOBP_REGULATION_OF_B_CELL_RECEPTOR_SIGNALING_PATHWAY, GOBP_REGULATION_OF_CELL_ACTIVATION, VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_REGULATION_OF_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, WALLACE_PROSTATE_CANCER_RACE_UP, HNF3ALPHA_Q6, GOBP_POSITIVE_REGULATION_OF_ENDOCYTOSIS, GOBP_POSITIVE_REGULATION_OF_MACROPHAGE_ACTIVATION, GOBP_MYELOID_LEUKOCYTE_MIGRATION, GOBP_CELL_CHEMOTAXIS, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, GOBP_CELLULAR_RESPONSE_TO_LIPID, GOBP_CELLULAR_RESPONSE_TO_BIOTIC_STIMULUS
GO Biological Process (12): cell surface receptor protein tyrosine kinase signaling pathway (GO:0007169), positive regulation of gene expression (GO:0010628), negative regulation of macrophage chemotaxis (GO:0010760), positive regulation of B cell receptor signaling pathway (GO:0050861), positive regulation of phagocytosis, engulfment (GO:0060100), cellular response to lipopolysaccharide (GO:0071222), negative regulation of ruffle assembly (GO:1900028), negative regulation of macrophage colony-stimulating factor signaling pathway (GO:1902227), positive regulation of microglial cell activation (GO:1903980), negative regulation of microglial cell migration (GO:1904140), positive regulation of microglial cell mediated cytotoxicity (GO:1904151), response to bacterium (GO:0009617)
GO Molecular Function (10): phosphotyrosine residue binding (GO:0001784), transmembrane receptor protein tyrosine kinase adaptor activity (GO:0005068), macrophage colony-stimulating factor receptor binding (GO:0005157), phospholipid binding (GO:0005543), protein kinase binding (GO:0019901), protein tyrosine kinase activator activity (GO:0030296), signaling adaptor activity (GO:0035591), protein binding (GO:0005515), protein-macromolecule adaptor activity (GO:0030674), receptor tyrosine kinase binding (GO:0030971)
GO Cellular Component (6): nucleus (GO:0005634), cytoplasm (GO:0005737), mitochondrion (GO:0005739), cytosol (GO:0005829), nuclear body (GO:0016604), protein-containing complex (GO:0032991)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| negative regulation of macrophage migration | 2 |
| intracellular membrane-bounded organelle | 2 |
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| enzyme-linked receptor protein signaling pathway | 1 |
| gene expression | 1 |
| regulation of gene expression | 1 |
| positive regulation of macromolecule biosynthetic process | 1 |
| negative regulation of leukocyte chemotaxis | 1 |
| regulation of macrophage chemotaxis | 1 |
| macrophage chemotaxis | 1 |
| B cell receptor signaling pathway | 1 |
| regulation of B cell receptor signaling pathway | 1 |
| positive regulation of antigen receptor-mediated signaling pathway | 1 |
| phagocytosis, engulfment | 1 |
| positive regulation of phagocytosis | 1 |
| regulation of phagocytosis, engulfment | 1 |
| positive regulation of membrane invagination | 1 |
| response to lipopolysaccharide | 1 |
| cellular response to molecule of bacterial origin | 1 |
| cellular response to lipid | 1 |
| cellular response to oxygen-containing compound | 1 |
| ruffle assembly | 1 |
| negative regulation of plasma membrane bounded cell projection assembly | 1 |
| regulation of ruffle assembly | 1 |
| negative regulation of cytokine-mediated signaling pathway | 1 |
| macrophage colony-stimulating factor signaling pathway | 1 |
| regulation of macrophage colony-stimulating factor signaling pathway | 1 |
| microglial cell activation | 1 |
| positive regulation of macrophage activation | 1 |
| positive regulation of neuroinflammatory response | 1 |
| regulation of microglial cell activation | 1 |
| negative regulation of glial cell migration | 1 |
| microglial cell migration | 1 |
| regulation of microglial cell migration | 1 |
| positive regulation of leukocyte mediated cytotoxicity | 1 |
| positive regulation of myeloid leukocyte mediated immunity | 1 |
| microglial cell mediated cytotoxicity | 1 |
| regulation of microglial cell mediated cytotoxicity | 1 |
| response to other organism | 1 |
Protein interactions and networks
STRING
584 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| STAP1 | BMX | P51813 | 770 |
| STAP1 | ITK | Q08881 | 633 |
| STAP1 | TXK | P42681 | 580 |
| STAP1 | LDLRAP1 | Q5SW96 | 580 |
| STAP1 | BTK | Q06187 | 561 |
| STAP1 | PCSK9 | Q8NBP7 | 511 |
| STAP1 | PLEK2 | Q9NYT0 | 497 |
| STAP1 | IRS2 | Q9Y4H2 | 491 |
| STAP1 | PLEK | P08567 | 471 |
| STAP1 | LIPA | P38571 | 447 |
| STAP1 | APOB | P04114 | 444 |
| STAP1 | IRS1 | P35568 | 438 |
| STAP1 | PNPLA5 | Q7Z6Z6 | 432 |
| STAP1 | TEC | P42680 | 393 |
| STAP1 | NIBAN3 | Q86XR2 | 393 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| URI1 | POLR2E | psi-mi:“MI:0914”(association) | 0.850 |
| STAP1 | SH3KBP1 | psi-mi:“MI:0915”(physical association) | 0.750 |
| SH3KBP1 | STAP1 | psi-mi:“MI:0915”(physical association) | 0.750 |
| RETREG3 | STAP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CCND3 | CDK1 | psi-mi:“MI:0914”(association) | 0.640 |
| STAP1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| STAP1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| GRIPAP1 | STAP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| STAP1 | SULT1A1 | psi-mi:“MI:0914”(association) | 0.530 |
| STAP1 | AR | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| STAP1 | GAB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| STAP1 | KIT | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| STAP1 | MET | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (31): SH3KBP1 (Two-hybrid), FAM134C (Two-hybrid), CD2AP (Affinity Capture-MS), SULT1A1 (Affinity Capture-MS), SH3KBP1 (Affinity Capture-MS), CAPZA2 (Affinity Capture-MS), CAPZB (Affinity Capture-MS), SH3KBP1 (Two-hybrid), SH3KBP1 (Affinity Capture-MS), CD2AP (Affinity Capture-MS), SULT1A1 (Affinity Capture-MS), STAP1 (Affinity Capture-MS), STAP1 (Affinity Capture-MS), GRIPAP1 (Two-hybrid), FAM134C (Two-hybrid)
ESM2 similar proteins: A1L2W9, B2RQE8, B5XG43, G9CGD6, O08969, O88387, P59113, Q0V987, Q0VC85, Q1KKW7, Q1KKZ1, Q32LP0, Q3UUV5, Q3ZBA3, Q4V7G1, Q503L1, Q53GA4, Q5FVW6, Q5PQT7, Q5R8M5, Q5U597, Q5XGP7, Q5ZL23, Q6P0G8, Q6PG29, Q7Z628, Q7Z6J4, Q80VL0, Q80YS6, Q86UX7, Q86WV1, Q8AW35, Q8BY35, Q8IZC4, Q8K1B8, Q8N556, Q8VH46, Q91ZM9, Q91ZT5, Q925E0
Diamond homologs: Q8R0L1, Q9JM90, Q9UGK3, Q9ULZ2, Q64398, Q86XP1
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TEC | “up-regulates activity” | STAP1 | phosphorylation |
| PTK2B | “up-regulates activity” | STAP1 | phosphorylation |
| STAP1 | “up-regulates activity” | TEC | binding |
| KIT | “up-regulates activity” | STAP1 | phosphorylation |
| STAP1 | “up-regulates activity” | STAT5A | binding |
| STAP1 | “up-regulates activity” | KIT | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 17 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| MAPK family signaling cascades | 5 | 46.8× | 6e-06 |
| Signaling by Receptor Tyrosine Kinases | 6 | 28.2× | 6e-06 |
| Diseases of signal transduction by growth factor receptors and second messengers | 5 | 25.8× | 7e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
158 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 79 |
| Likely benign | 51 |
| Benign | 14 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 189309 | NM_012108.4(STAP1):c.139A>G (p.Thr47Ala) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
1940 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:67577230:T:A | W112R | 0.999 |
| 4:67577230:T:C | W112R | 0.999 |
| 4:67571109:T:C | L49S | 0.997 |
| 4:67583602:G:C | A187P | 0.997 |
| 4:67583651:G:C | R203T | 0.997 |
| 4:67583652:G:C | R203S | 0.997 |
| 4:67583652:G:T | R203S | 0.997 |
| 4:67558863:G:C | R18S | 0.996 |
| 4:67558863:G:T | R18S | 0.996 |
| 4:67577232:G:C | W112C | 0.996 |
| 4:67577232:G:T | W112C | 0.996 |
| 4:67583648:T:C | L202P | 0.996 |
| 4:67583651:G:T | R203M | 0.996 |
| 4:67571113:A:C | R50S | 0.994 |
| 4:67571113:A:T | R50S | 0.994 |
| 4:67577231:G:C | W112S | 0.994 |
| 4:67558862:G:C | R18T | 0.993 |
| 4:67571115:G:T | G51V | 0.993 |
| 4:67583615:T:A | L191H | 0.993 |
| 4:67583636:G:A | G198E | 0.993 |
| 4:67583636:G:T | G198V | 0.993 |
| 4:67583650:A:G | R203G | 0.993 |
| 4:67571112:G:C | R50T | 0.992 |
| 4:67583615:T:C | L191P | 0.992 |
| 4:67590937:T:A | I238N | 0.992 |
| 4:67571114:G:A | G51R | 0.991 |
| 4:67571114:G:C | G51R | 0.991 |
| 4:67577239:T:C | F115L | 0.991 |
| 4:67577241:C:A | F115L | 0.991 |
| 4:67577241:C:G | F115L | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000018319 (4:67576477 A>G,T), RS1000045451 (4:67559714 A>G), RS10000695 (4:67591977 A>G,T), RS1000129913 (4:67582801 C>T), RS10002109 (4:67590356 C>T), RS1000216221 (4:67557013 C>G), RS10002440 (4:67591331 T>A,C,G), RS10002486 (4:67560652 C>A,G,T), RS1000577378 (4:67600723 C>A), RS1000651140 (4:67558223 C>T), RS1000705785 (4:67564909 C>T), RS1000753389 (4:67578809 T>C), RS1000837719 (4:67583807 G>A), RS1000924224 (4:67560146 T>A,C), RS1000933137 (4:67603209 G>A,T)
Disease associations
OMIM: gene MIM:604298 | disease phenotypes: MIM:143890
GenCC curated gene-disease
Mondo (1): hypercholesterolemia, familial, 1 (MONDO:0007750)
Orphanet (1): Homozygous familial hypercholesterolemia (Orphanet:391665)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000005_2 | Parkinson’s disease | 2.000000e-06 |
| GCST006921_13 | Regular attendance at a pub or social club | 7.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009592 | social interaction measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | decreases methylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Lipopolysaccharides | affects response to substance, increases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Methotrexate | increases expression | 1 |
| Nickel | increases expression | 1 |
| Progesterone | affects cotreatment, decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Clinical trials (associated diseases)
28 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06231459 | PHASE4 | COMPLETED | Expression of Pro- and Anti-inflammatory Cytokines During Anti-PCSK9 in Familial Hypercholesterolemia |
| NCT00000594 | PHASE3 | COMPLETED | NHLBI Type II Coronary Intervention Study |
| NCT00092833 | PHASE3 | TERMINATED | Investigational Drug in Patients With Hypercholesterolemia or in Patients With Sitosterolemia (0653-026)(COMPLETED) |
| NCT00134485 | PHASE3 | COMPLETED | Study To Evaluate The Safety And Efficacy Of Torcetrapib/Atorvastatin In Subjects With Familial Hypercholerolemia |
| NCT00134511 | PHASE3 | COMPLETED | Study To Evaluate The Effect Of Torcetrapib/Atorvastatin In Patients With Genetic High Cholesterol Disorder |
| NCT00136981 | PHASE3 | COMPLETED | Carotid B-Mode Ultrasound Study to Compare Anti-Atherosclerotic Effect of Torcetrpib/Atorvastatin to Atorvastatin Alone. |
| NCT00384293 | PHASE3 | TERMINATED | Carotid IMT (Intima Media Thickening) Study (0524A-041)(TERMINATED) |
| NCT01524289 | PHASE3 | COMPLETED | Study to Assess the Tolerability and Efficacy of Anacetrapib (MK-0859) Co-Administered With Statin in Participants With Heterozygous Familial Hypercholesterolemia (MK-0859-020) |
| NCT00280995 | PHASE2 | COMPLETED | Dose-escalating Safety Study of ISIS 301012 in Homozygous Familial Hypercholesterolemia Subjects on Lipid Lowering Therapy |
| NCT00281008 | PHASE2 | COMPLETED | Study of ISIS 301012 (Mipomersen) in Heterozygous Familial Hypercholesterolemia Subjects on Lipid Lowering Therapy |
| NCT01375751 | PHASE2 | COMPLETED | Reduction of Low-Density Lipoprotein Cholesterol (LDL-C) With PCSK9 Inhibition in Heterozygous Familial Hypercholesterolemia Disorder Study |
| NCT00515307 | PHASE1 | COMPLETED | Bone Marrow Stem Cells as a Source of Allogenic Hepatocyte Transplantation in Homozygous Familial Hypercholesterolemia |
| NCT01583647 | PHASE1 | TERMINATED | A Study of Extended-release (ER) Niacin/Laropiprant in Adolescents With Heterozygous Familial Hypercholesterolemia (MK-0524A-158) |
| NCT00005168 | Not specified | COMPLETED | Hyperapo B and Coronary Heart Disease |
| NCT01753232 | Not specified | COMPLETED | Safety and Efficacy of the DALI LDL-adsorber and MONET Lipoprotein Filter |
| NCT03018678 | Not specified | COMPLETED | Screening Protocol for a Gene Therapy Trial in Subjects With Homozygous Familial Hypercholesterolemia |
| NCT03110432 | Not specified | COMPLETED | Prospective German Very High Cardiovascular Risk Patients Dyslipidemia Treatment Indication Registry |
| NCT03795038 | Not specified | COMPLETED | Comparison of the Plasma Lipoprotein Apheresis Systems DIAMED and MONET vs. the Whole Blood Apheresis System DALI |
| NCT03989167 | Not specified | RECRUITING | Clinical Decision Support for Familial Hypercholesterolemia |
| NCT04073797 | Not specified | RECRUITING | PET Imaging of Inflammation and Lipid Lowering Study |
| NCT04118348 | Not specified | COMPLETED | Evaluating the Efficacy of Pediatric Lipid Screening Alerts |
| NCT04313270 | Not specified | UNKNOWN | Subclinical Atherosclerosis in Patients With Familial Hypercholesterolemia Treated With Evolocumab® |
| NCT04526457 | Not specified | COMPLETED | Is Family Screening Improved by Genetic Testing of Familial Hypercholesterolemia |
| NCT04656028 | Not specified | ACTIVE_NOT_RECRUITING | Genetic Testing and Motivational Counseling for FH |
| NCT04722068 | Not specified | COMPLETED | Regeneron 1331 Kinetics Sub-Study HoFH |
| NCT04837638 | Not specified | UNKNOWN | Diet Quality and Coronary Artery Calcification in Adults With Heterozygous Familial Hypercholesterolemia |
| NCT06555120 | Not specified | RECRUITING | Screening for Familial Hypercholesterolemia in Children |
| NCT07543731 | Not specified | NOT_YET_RECRUITING | A Real-World Study of Long-Term Adherence and Persistence to Inclisiran, Evolocumab, and Alirocumab |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hypercholesterolemia, familial, 1